Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1165

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1164 and PfGW456L13_1165 overlap by 35 nucleotidesPfGW456L13_1165 and PfGW456L13_1166 overlap by 8 nucleotidesPfGW456L13_1166 and PfGW456L13_1167 overlap by 4 nucleotides PfGW456L13_1164 - Coenzyme PQQ synthesis protein F (EC 3.4.99.-), at 1,293,105 to 1,294,931 _1164 PfGW456L13_1165 - Coenzyme PQQ synthesis protein E, at 1,294,897 to 1,296,048 _1165 PfGW456L13_1166 - Coenzyme PQQ synthesis protein D, at 1,296,041 to 1,296,316 _1166 PfGW456L13_1167 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 1,296,313 to 1,297,065 _1167 Position (kb) 1294 1295 1296 1297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1293.988 kb on + strand, within PfGW456L13_1164at 1293.988 kb on + strand, within PfGW456L13_1164at 1293.988 kb on + strand, within PfGW456L13_1164at 1293.988 kb on + strand, within PfGW456L13_1164at 1293.989 kb on - strand, within PfGW456L13_1164at 1293.989 kb on - strand, within PfGW456L13_1164at 1293.989 kb on - strand, within PfGW456L13_1164at 1293.989 kb on - strand, within PfGW456L13_1164at 1293.989 kb on - strand, within PfGW456L13_1164at 1293.989 kb on - strand, within PfGW456L13_1164at 1294.030 kb on + strand, within PfGW456L13_1164at 1294.030 kb on + strand, within PfGW456L13_1164at 1294.031 kb on - strand, within PfGW456L13_1164at 1294.031 kb on - strand, within PfGW456L13_1164at 1294.031 kb on - strand, within PfGW456L13_1164at 1294.065 kb on + strand, within PfGW456L13_1164at 1294.065 kb on + strand, within PfGW456L13_1164at 1294.066 kb on - strand, within PfGW456L13_1164at 1294.066 kb on - strand, within PfGW456L13_1164at 1294.066 kb on - strand, within PfGW456L13_1164at 1294.066 kb on - strand, within PfGW456L13_1164at 1294.066 kb on - strand, within PfGW456L13_1164at 1294.108 kb on + strand, within PfGW456L13_1164at 1294.108 kb on + strand, within PfGW456L13_1164at 1294.109 kb on - strand, within PfGW456L13_1164at 1294.109 kb on - strand, within PfGW456L13_1164at 1294.109 kb on - strand, within PfGW456L13_1164at 1294.109 kb on - strand, within PfGW456L13_1164at 1294.109 kb on - strand, within PfGW456L13_1164at 1294.109 kb on - strand, within PfGW456L13_1164at 1294.232 kb on - strand, within PfGW456L13_1164at 1294.255 kb on + strand, within PfGW456L13_1164at 1294.256 kb on - strand, within PfGW456L13_1164at 1294.256 kb on - strand, within PfGW456L13_1164at 1294.256 kb on - strand, within PfGW456L13_1164at 1294.572 kb on + strand, within PfGW456L13_1164at 1294.572 kb on + strand, within PfGW456L13_1164at 1294.572 kb on + strand, within PfGW456L13_1164at 1294.573 kb on - strand, within PfGW456L13_1164at 1294.573 kb on - strand, within PfGW456L13_1164at 1294.714 kb on + strand, within PfGW456L13_1164at 1294.714 kb on + strand, within PfGW456L13_1164at 1294.714 kb on + strand, within PfGW456L13_1164at 1294.714 kb on + strand, within PfGW456L13_1164at 1294.715 kb on - strand, within PfGW456L13_1164at 1294.724 kb on + strand, within PfGW456L13_1164at 1295.278 kb on - strand, within PfGW456L13_1165at 1295.319 kb on - strand, within PfGW456L13_1165at 1295.319 kb on - strand, within PfGW456L13_1165at 1295.319 kb on - strand, within PfGW456L13_1165at 1295.321 kb on + strand, within PfGW456L13_1165at 1295.321 kb on + strand, within PfGW456L13_1165at 1295.322 kb on - strand, within PfGW456L13_1165at 1295.462 kb on + strand, within PfGW456L13_1165at 1295.541 kb on + strand, within PfGW456L13_1165at 1295.766 kb on + strand, within PfGW456L13_1165at 1295.766 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.768 kb on + strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.769 kb on - strand, within PfGW456L13_1165at 1295.949 kb on - strandat 1295.972 kb on + strandat 1295.972 kb on + strandat 1295.973 kb on - strandat 1295.973 kb on - strandat 1295.973 kb on - strandat 1295.973 kb on - strandat 1295.973 kb on - strandat 1295.973 kb on - strandat 1296.025 kb on + strandat 1296.026 kb on - strandat 1296.026 kb on - strandat 1296.026 kb on - strandat 1296.228 kb on + strand, within PfGW456L13_1166at 1296.229 kb on - strand, within PfGW456L13_1166at 1296.261 kb on + strand, within PfGW456L13_1166at 1296.316 kb on + strandat 1296.316 kb on + strandat 1296.316 kb on + strandat 1296.317 kb on - strandat 1296.317 kb on - strandat 1296.476 kb on + strand, within PfGW456L13_1167at 1296.476 kb on + strand, within PfGW456L13_1167at 1296.476 kb on + strand, within PfGW456L13_1167at 1296.476 kb on + strand, within PfGW456L13_1167at 1296.476 kb on + strand, within PfGW456L13_1167at 1296.477 kb on - strand, within PfGW456L13_1167at 1296.477 kb on - strand, within PfGW456L13_1167at 1296.477 kb on - strand, within PfGW456L13_1167at 1296.477 kb on - strand, within PfGW456L13_1167at 1296.546 kb on - strand, within PfGW456L13_1167at 1296.546 kb on - strand, within PfGW456L13_1167at 1296.576 kb on - strand, within PfGW456L13_1167at 1296.686 kb on + strand, within PfGW456L13_1167at 1296.686 kb on + strand, within PfGW456L13_1167at 1296.686 kb on + strand, within PfGW456L13_1167at 1296.686 kb on + strand, within PfGW456L13_1167at 1296.687 kb on - strand, within PfGW456L13_1167at 1296.687 kb on - strand, within PfGW456L13_1167at 1296.687 kb on - strand, within PfGW456L13_1167at 1296.687 kb on - strand, within PfGW456L13_1167at 1296.687 kb on - strand, within PfGW456L13_1167at 1296.687 kb on - strand, within PfGW456L13_1167at 1296.911 kb on + strand, within PfGW456L13_1167at 1296.912 kb on - strand, within PfGW456L13_1167at 1296.912 kb on - strand, within PfGW456L13_1167at 1296.914 kb on + strand, within PfGW456L13_1167at 1296.914 kb on + strand, within PfGW456L13_1167at 1296.914 kb on + strand, within PfGW456L13_1167at 1296.914 kb on + strand, within PfGW456L13_1167at 1296.914 kb on + strand, within PfGW456L13_1167at 1296.914 kb on + strand, within PfGW456L13_1167at 1296.940 kb on + strand, within PfGW456L13_1167at 1296.940 kb on + strand, within PfGW456L13_1167at 1296.940 kb on + strand, within PfGW456L13_1167at 1296.940 kb on + strand, within PfGW456L13_1167at 1296.941 kb on - strand, within PfGW456L13_1167at 1296.941 kb on - strand, within PfGW456L13_1167at 1296.941 kb on - strand, within PfGW456L13_1167at 1296.968 kb on + strand, within PfGW456L13_1167at 1296.968 kb on + strand, within PfGW456L13_1167at 1296.968 kb on + strand, within PfGW456L13_1167at 1296.968 kb on + strandat 1296.968 kb on + strand, within PfGW456L13_1167at 1296.969 kb on - strand, within PfGW456L13_1167at 1296.969 kb on - strand, within PfGW456L13_1167at 1296.969 kb on - strand, within PfGW456L13_1167at 1296.969 kb on - strand, within PfGW456L13_1167at 1296.969 kb on - strand, within PfGW456L13_1167at 1296.969 kb on - strand, within PfGW456L13_1167at 1296.969 kb on - strand, within PfGW456L13_1167at 1296.983 kb on + strandat 1296.984 kb on - strand, within PfGW456L13_1167at 1297.001 kb on + strandat 1297.001 kb on + strandat 1297.001 kb on + strandat 1297.002 kb on - strandat 1297.002 kb on - strandat 1297.002 kb on - strandat 1297.002 kb on - strandat 1297.002 kb on - strandat 1297.002 kb on - strandat 1297.002 kb on - strandat 1297.004 kb on + strandat 1297.004 kb on + strandat 1297.004 kb on + strandat 1297.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,293,988 + PfGW456L13_1164 0.48 -2.1
1,293,988 + PfGW456L13_1164 0.48 +0.9
1,293,988 + PfGW456L13_1164 0.48 -1.5
1,293,988 + PfGW456L13_1164 0.48 +0.9
1,293,989 - PfGW456L13_1164 0.48 +0.4
1,293,989 - PfGW456L13_1164 0.48 +1.7
1,293,989 - PfGW456L13_1164 0.48 +1.3
1,293,989 - PfGW456L13_1164 0.48 -0.2
1,293,989 - PfGW456L13_1164 0.48 +0.6
1,293,989 - PfGW456L13_1164 0.48 +1.4
1,294,030 + PfGW456L13_1164 0.51 -0.7
1,294,030 + PfGW456L13_1164 0.51 +0.4
1,294,031 - PfGW456L13_1164 0.51 -1.6
1,294,031 - PfGW456L13_1164 0.51 +0.8
1,294,031 - PfGW456L13_1164 0.51 +1.2
1,294,065 + PfGW456L13_1164 0.53 -2.9
1,294,065 + PfGW456L13_1164 0.53 -0.6
1,294,066 - PfGW456L13_1164 0.53 -0.8
1,294,066 - PfGW456L13_1164 0.53 +0.2
1,294,066 - PfGW456L13_1164 0.53 +0.5
1,294,066 - PfGW456L13_1164 0.53 +0.0
1,294,066 - PfGW456L13_1164 0.53 -1.8
1,294,108 + PfGW456L13_1164 0.55 -1.8
1,294,108 + PfGW456L13_1164 0.55 -0.9
1,294,109 - PfGW456L13_1164 0.55 -3.0
1,294,109 - PfGW456L13_1164 0.55 -0.5
1,294,109 - PfGW456L13_1164 0.55 -2.9
1,294,109 - PfGW456L13_1164 0.55 +0.8
1,294,109 - PfGW456L13_1164 0.55 -1.7
1,294,109 - PfGW456L13_1164 0.55 +0.6
1,294,232 - PfGW456L13_1164 0.62 -1.9
1,294,255 + PfGW456L13_1164 0.63 +1.0
1,294,256 - PfGW456L13_1164 0.63 +0.2
1,294,256 - PfGW456L13_1164 0.63 +0.9
1,294,256 - PfGW456L13_1164 0.63 +1.4
1,294,572 + PfGW456L13_1164 0.80 -0.9
1,294,572 + PfGW456L13_1164 0.80 -0.9
1,294,572 + PfGW456L13_1164 0.80 -1.5
1,294,573 - PfGW456L13_1164 0.80 +0.2
1,294,573 - PfGW456L13_1164 0.80 -0.2
1,294,714 + PfGW456L13_1164 0.88 -0.8
1,294,714 + PfGW456L13_1164 0.88 +0.3
1,294,714 + PfGW456L13_1164 0.88 -0.4
1,294,714 + PfGW456L13_1164 0.88 -0.8
1,294,715 - PfGW456L13_1164 0.88 -0.3
1,294,724 + PfGW456L13_1164 0.89 +1.1
1,295,278 - PfGW456L13_1165 0.33 -1.8
1,295,319 - PfGW456L13_1165 0.37 +1.5
1,295,319 - PfGW456L13_1165 0.37 +0.7
1,295,319 - PfGW456L13_1165 0.37 +0.6
1,295,321 + PfGW456L13_1165 0.37 -0.4
1,295,321 + PfGW456L13_1165 0.37 +1.5
1,295,322 - PfGW456L13_1165 0.37 +1.1
1,295,462 + PfGW456L13_1165 0.49 +0.2
1,295,541 + PfGW456L13_1165 0.56 +0.2
1,295,766 + PfGW456L13_1165 0.75 -0.5
1,295,766 + PfGW456L13_1165 0.75 +0.8
1,295,768 + PfGW456L13_1165 0.76 +0.2
1,295,768 + PfGW456L13_1165 0.76 -1.2
1,295,768 + PfGW456L13_1165 0.76 -1.2
1,295,768 + PfGW456L13_1165 0.76 -0.2
1,295,768 + PfGW456L13_1165 0.76 +0.5
1,295,768 + PfGW456L13_1165 0.76 +1.8
1,295,768 + PfGW456L13_1165 0.76 +1.8
1,295,768 + PfGW456L13_1165 0.76 +0.5
1,295,769 - PfGW456L13_1165 0.76 +1.9
1,295,769 - PfGW456L13_1165 0.76 -0.4
1,295,769 - PfGW456L13_1165 0.76 -0.5
1,295,769 - PfGW456L13_1165 0.76 -1.5
1,295,769 - PfGW456L13_1165 0.76 +1.3
1,295,769 - PfGW456L13_1165 0.76 +0.3
1,295,769 - PfGW456L13_1165 0.76 -1.6
1,295,769 - PfGW456L13_1165 0.76 +1.9
1,295,949 - -2.0
1,295,972 + +0.2
1,295,972 + +0.8
1,295,973 - -2.8
1,295,973 - +2.7
1,295,973 - +2.2
1,295,973 - +0.5
1,295,973 - -1.5
1,295,973 - -3.3
1,296,025 + -2.7
1,296,026 - +1.2
1,296,026 - -1.3
1,296,026 - +0.2
1,296,228 + PfGW456L13_1166 0.68 -1.2
1,296,229 - PfGW456L13_1166 0.68 -2.3
1,296,261 + PfGW456L13_1166 0.80 -2.4
1,296,316 + +0.2
1,296,316 + +1.6
1,296,316 + +0.4
1,296,317 - -1.1
1,296,317 - -0.1
1,296,476 + PfGW456L13_1167 0.22 -0.1
1,296,476 + PfGW456L13_1167 0.22 -0.7
1,296,476 + PfGW456L13_1167 0.22 +1.0
1,296,476 + PfGW456L13_1167 0.22 +0.7
1,296,476 + PfGW456L13_1167 0.22 -1.4
1,296,477 - PfGW456L13_1167 0.22 +2.1
1,296,477 - PfGW456L13_1167 0.22 -0.4
1,296,477 - PfGW456L13_1167 0.22 -2.4
1,296,477 - PfGW456L13_1167 0.22 +1.1
1,296,546 - PfGW456L13_1167 0.31 -1.1
1,296,546 - PfGW456L13_1167 0.31 +0.8
1,296,576 - PfGW456L13_1167 0.35 +0.6
1,296,686 + PfGW456L13_1167 0.50 -0.8
1,296,686 + PfGW456L13_1167 0.50 +0.5
1,296,686 + PfGW456L13_1167 0.50 +2.3
1,296,686 + PfGW456L13_1167 0.50 -2.4
1,296,687 - PfGW456L13_1167 0.50 +0.3
1,296,687 - PfGW456L13_1167 0.50 -1.5
1,296,687 - PfGW456L13_1167 0.50 +0.8
1,296,687 - PfGW456L13_1167 0.50 +1.6
1,296,687 - PfGW456L13_1167 0.50 -1.5
1,296,687 - PfGW456L13_1167 0.50 +0.9
1,296,911 + PfGW456L13_1167 0.79 -0.4
1,296,912 - PfGW456L13_1167 0.80 +0.1
1,296,912 - PfGW456L13_1167 0.80 +0.6
1,296,914 + PfGW456L13_1167 0.80 +0.8
1,296,914 + PfGW456L13_1167 0.80 -0.1
1,296,914 + PfGW456L13_1167 0.80 +0.6
1,296,914 + PfGW456L13_1167 0.80 +1.7
1,296,914 + PfGW456L13_1167 0.80 +0.5
1,296,914 + PfGW456L13_1167 0.80 +1.3
1,296,940 + PfGW456L13_1167 0.83 +0.2
1,296,940 + PfGW456L13_1167 0.83 +0.0
1,296,940 + PfGW456L13_1167 0.83 -0.7
1,296,940 + PfGW456L13_1167 0.83 -2.0
1,296,941 - PfGW456L13_1167 0.83 -0.5
1,296,941 - PfGW456L13_1167 0.83 +1.1
1,296,941 - PfGW456L13_1167 0.83 +0.0
1,296,968 + PfGW456L13_1167 0.87 +0.3
1,296,968 + PfGW456L13_1167 0.87 +1.1
1,296,968 + PfGW456L13_1167 0.87 +0.5
1,296,968 + +0.7
1,296,968 + PfGW456L13_1167 0.87 -2.1
1,296,969 - PfGW456L13_1167 0.87 +1.1
1,296,969 - PfGW456L13_1167 0.87 -0.4
1,296,969 - PfGW456L13_1167 0.87 +2.0
1,296,969 - PfGW456L13_1167 0.87 +1.1
1,296,969 - PfGW456L13_1167 0.87 -1.4
1,296,969 - PfGW456L13_1167 0.87 -1.8
1,296,969 - PfGW456L13_1167 0.87 +0.8
1,296,983 + +0.7
1,296,984 - PfGW456L13_1167 0.89 -0.2
1,297,001 + -2.2
1,297,001 + -0.0
1,297,001 + -1.8
1,297,002 - +0.6
1,297,002 - +0.7
1,297,002 - -1.9
1,297,002 - -0.7
1,297,002 - +1.2
1,297,002 - +0.6
1,297,002 - -3.5
1,297,004 + -1.0
1,297,004 + -1.8
1,297,004 + -0.5
1,297,005 - -2.3

Or see this region's nucleotide sequence