Experiment: Shikimic Acid carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03971 and PFR28_03972 are separated by 79 nucleotides PFR28_03972 and PFR28_03973 are separated by 9 nucleotides PFR28_03973 and PFR28_03974 are separated by 178 nucleotides
PFR28_03971: PFR28_03971 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 4,555,566 to 4,556,120
_03971
PFR28_03972: PFR28_03972 - Single-stranded DNA-binding protein, at 4,556,200 to 4,556,712
_03972
PFR28_03973: PFR28_03973 - Inner membrane transport protein YajR, at 4,556,722 to 4,558,119
_03973
PFR28_03974: PFR28_03974 - UvrABC system protein A, at 4,558,298 to 4,561,132
_03974
Position (kb) 4556
4557
4558
4559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.960 kb on - strand, within PFR28_03971 at 4556.090 kb on + strand at 4556.104 kb on + strand at 4556.201 kb on + strand at 4556.201 kb on + strand at 4556.201 kb on + strand at 4556.201 kb on + strand at 4556.202 kb on - strand at 4556.202 kb on - strand at 4556.202 kb on - strand at 4556.806 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.950 kb on - strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4557.080 kb on + strand, within PFR28_03973 at 4557.229 kb on + strand, within PFR28_03973 at 4557.230 kb on - strand, within PFR28_03973 at 4557.299 kb on + strand, within PFR28_03973 at 4557.299 kb on + strand, within PFR28_03973 at 4557.299 kb on + strand, within PFR28_03973 at 4557.299 kb on + strand, within PFR28_03973 at 4557.300 kb on - strand, within PFR28_03973 at 4557.300 kb on - strand, within PFR28_03973 at 4557.350 kb on + strand, within PFR28_03973 at 4557.351 kb on - strand, within PFR28_03973 at 4557.866 kb on + strand, within PFR28_03973 at 4557.866 kb on + strand, within PFR28_03973 at 4557.867 kb on - strand, within PFR28_03973 at 4557.941 kb on + strand, within PFR28_03973 at 4557.998 kb on + strand at 4557.998 kb on + strand at 4557.998 kb on + strand at 4557.998 kb on + strand at 4557.999 kb on - strand at 4558.038 kb on + strand at 4558.038 kb on + strand at 4558.152 kb on - strand at 4558.175 kb on + strand at 4558.175 kb on + strand at 4558.175 kb on + strand at 4558.176 kb on - strand at 4558.177 kb on + strand at 4558.208 kb on + strand at 4558.208 kb on + strand at 4558.208 kb on + strand at 4558.209 kb on - strand at 4558.209 kb on - strand at 4558.209 kb on - strand at 4558.209 kb on - strand at 4558.209 kb on - strand at 4558.209 kb on - strand at 4558.209 kb on - strand at 4558.209 kb on - strand at 4558.258 kb on + strand at 4558.258 kb on + strand at 4558.258 kb on + strand at 4558.258 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.260 kb on + strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.261 kb on - strand at 4558.266 kb on + strand at 4558.267 kb on - strand at 4558.267 kb on - strand at 4558.370 kb on - strand at 4558.454 kb on + strand at 4558.454 kb on + strand at 4558.454 kb on + strand at 4558.454 kb on + strand at 4558.454 kb on + strand at 4558.455 kb on - strand at 4558.455 kb on - strand at 4558.455 kb on - strand at 4558.455 kb on - strand at 4558.455 kb on - strand at 4558.455 kb on - strand at 4558.455 kb on - strand at 4558.610 kb on + strand, within PFR28_03974 at 4558.610 kb on + strand, within PFR28_03974 at 4558.611 kb on - strand, within PFR28_03974 at 4558.611 kb on - strand, within PFR28_03974 at 4558.616 kb on + strand, within PFR28_03974 at 4558.616 kb on + strand, within PFR28_03974 at 4558.617 kb on - strand, within PFR28_03974 at 4558.617 kb on - strand, within PFR28_03974
Per-strain Table
Position Strand Gene LocusTag Fraction Shikimic Acid carbon 10 mM remove 4,555,827 + PFR28_03971 0.47 -0.7 4,555,827 + PFR28_03971 0.47 -0.2 4,555,827 + PFR28_03971 0.47 +0.1 4,555,827 + PFR28_03971 0.47 +0.3 4,555,827 + PFR28_03971 0.47 +0.0 4,555,827 + PFR28_03971 0.47 -1.0 4,555,827 + PFR28_03971 0.47 +2.0 4,555,827 + PFR28_03971 0.47 -0.6 4,555,827 + PFR28_03971 0.47 -0.7 4,555,827 + PFR28_03971 0.47 +0.5 4,555,827 + PFR28_03971 0.47 -1.4 4,555,827 + PFR28_03971 0.47 +0.0 4,555,827 + PFR28_03971 0.47 +0.6 4,555,828 - PFR28_03971 0.47 +0.7 4,555,828 - PFR28_03971 0.47 +0.5 4,555,828 - PFR28_03971 0.47 -0.3 4,555,828 - PFR28_03971 0.47 -0.6 4,555,828 - PFR28_03971 0.47 -0.1 4,555,828 - PFR28_03971 0.47 +1.4 4,555,828 - PFR28_03971 0.47 +0.1 4,555,828 - PFR28_03971 0.47 -0.2 4,555,828 - PFR28_03971 0.47 -0.6 4,555,828 - PFR28_03971 0.47 +0.2 4,555,828 - PFR28_03971 0.47 +0.6 4,555,828 - PFR28_03971 0.47 +0.4 4,555,828 - PFR28_03971 0.47 +1.2 4,555,828 - PFR28_03971 0.47 -0.3 4,555,828 - PFR28_03971 0.47 +0.8 4,555,828 - PFR28_03971 0.47 +0.0 4,555,828 - PFR28_03971 0.47 -1.2 4,555,828 - PFR28_03971 0.47 -0.5 4,555,916 + PFR28_03971 0.63 -0.2 4,555,916 + PFR28_03971 0.63 -0.4 4,555,916 + PFR28_03971 0.63 -0.3 4,555,916 + PFR28_03971 0.63 -0.2 4,555,916 + PFR28_03971 0.63 +0.2 4,555,916 + PFR28_03971 0.63 +0.1 4,555,916 + PFR28_03971 0.63 +0.4 4,555,916 + PFR28_03971 0.63 -0.4 4,555,916 + PFR28_03971 0.63 -0.4 4,555,916 + PFR28_03971 0.63 +0.8 4,555,916 + PFR28_03971 0.63 -0.7 4,555,917 - PFR28_03971 0.63 +0.1 4,555,917 - PFR28_03971 0.63 -0.5 4,555,917 - PFR28_03971 0.63 +0.2 4,555,917 - PFR28_03971 0.63 +1.0 4,555,917 - PFR28_03971 0.63 +0.0 4,555,917 - PFR28_03971 0.63 +0.7 4,555,917 - PFR28_03971 0.63 +0.6 4,555,917 - PFR28_03971 0.63 +0.1 4,555,917 - PFR28_03971 0.63 -0.1 4,555,917 - PFR28_03971 0.63 +0.2 4,555,917 - PFR28_03971 0.63 +0.0 4,555,917 - PFR28_03971 0.63 +0.3 4,555,917 - PFR28_03971 0.63 +0.5 4,555,960 - PFR28_03971 0.71 +0.0 4,556,090 + +0.7 4,556,104 + -0.3 4,556,201 + -0.2 4,556,201 + +0.1 4,556,201 + -2.3 4,556,201 + +0.6 4,556,202 - -0.2 4,556,202 - +0.4 4,556,202 - -0.6 4,556,806 - +0.1 4,556,808 - -0.6 4,556,808 - +1.2 4,556,808 - -0.8 4,556,808 - +1.0 4,556,808 - -1.8 4,556,931 - PFR28_03973 0.15 -0.8 4,556,931 - PFR28_03973 0.15 -1.5 4,556,931 - PFR28_03973 0.15 -0.5 4,556,931 - PFR28_03973 0.15 -0.7 4,556,931 - PFR28_03973 0.15 -1.0 4,556,931 - PFR28_03973 0.15 +0.3 4,556,931 - PFR28_03973 0.15 +0.1 4,556,931 - PFR28_03973 0.15 -0.0 4,556,931 - PFR28_03973 0.15 -0.3 4,556,931 - PFR28_03973 0.15 -0.3 4,556,950 - PFR28_03973 0.16 -0.2 4,556,998 + PFR28_03973 0.20 -0.2 4,556,998 + PFR28_03973 0.20 -2.5 4,556,998 + PFR28_03973 0.20 +0.2 4,556,998 + PFR28_03973 0.20 -1.3 4,556,999 - PFR28_03973 0.20 -1.0 4,556,999 - PFR28_03973 0.20 -1.0 4,556,999 - PFR28_03973 0.20 -0.4 4,556,999 - PFR28_03973 0.20 -1.2 4,556,999 - PFR28_03973 0.20 +0.6 4,556,999 - PFR28_03973 0.20 -1.2 4,557,080 + PFR28_03973 0.26 -1.4 4,557,229 + PFR28_03973 0.36 -3.5 4,557,230 - PFR28_03973 0.36 -2.0 4,557,299 + PFR28_03973 0.41 -2.9 4,557,299 + PFR28_03973 0.41 +1.0 4,557,299 + PFR28_03973 0.41 +2.6 4,557,299 + PFR28_03973 0.41 +0.0 4,557,300 - PFR28_03973 0.41 -1.5 4,557,300 - PFR28_03973 0.41 -1.7 4,557,350 + PFR28_03973 0.45 -0.3 4,557,351 - PFR28_03973 0.45 -1.1 4,557,866 + PFR28_03973 0.82 -0.7 4,557,866 + PFR28_03973 0.82 -1.6 4,557,867 - PFR28_03973 0.82 -0.4 4,557,941 + PFR28_03973 0.87 -1.9 4,557,998 + -0.6 4,557,998 + -1.0 4,557,998 + -1.8 4,557,998 + -0.2 4,557,999 - -2.2 4,558,038 + -2.0 4,558,038 + -1.2 4,558,152 - +0.1 4,558,175 + -1.7 4,558,175 + -0.8 4,558,175 + -0.7 4,558,176 - +0.1 4,558,177 + +0.1 4,558,208 + +0.1 4,558,208 + -0.2 4,558,208 + +0.9 4,558,209 - -1.0 4,558,209 - +0.2 4,558,209 - -0.2 4,558,209 - +0.5 4,558,209 - +0.5 4,558,209 - -1.1 4,558,209 - +0.1 4,558,209 - -1.2 4,558,258 + -0.1 4,558,258 + -0.3 4,558,258 + +0.4 4,558,258 + +0.1 4,558,260 + -0.2 4,558,260 + -0.1 4,558,260 + -0.2 4,558,260 + -0.6 4,558,260 + +0.6 4,558,260 + -0.2 4,558,260 + -0.2 4,558,260 + +0.0 4,558,260 + -0.4 4,558,260 + +0.5 4,558,260 + -1.5 4,558,260 + -0.6 4,558,260 + +1.6 4,558,260 + -0.8 4,558,260 + -0.2 4,558,260 + -0.1 4,558,260 + -0.4 4,558,260 + +0.5 4,558,260 + -0.4 4,558,260 + -1.0 4,558,260 + -1.2 4,558,260 + +0.4 4,558,261 - -1.1 4,558,261 - -0.9 4,558,261 - -0.1 4,558,261 - -0.2 4,558,261 - +1.0 4,558,261 - +0.0 4,558,261 - +0.1 4,558,261 - -1.0 4,558,261 - +0.6 4,558,261 - +0.1 4,558,261 - +1.0 4,558,261 - -0.8 4,558,261 - +0.9 4,558,261 - +0.1 4,558,261 - -1.4 4,558,261 - +0.5 4,558,261 - +0.0 4,558,261 - -0.5 4,558,261 - -1.2 4,558,261 - -0.2 4,558,261 - -1.3 4,558,261 - +0.0 4,558,261 - +0.5 4,558,261 - -1.4 4,558,261 - -0.4 4,558,266 + -0.1 4,558,267 - +0.1 4,558,267 - +0.8 4,558,370 - +1.2 4,558,454 + +0.4 4,558,454 + +0.3 4,558,454 + +0.9 4,558,454 + -0.1 4,558,454 + +1.1 4,558,455 - +0.7 4,558,455 - +0.3 4,558,455 - +0.2 4,558,455 - -1.1 4,558,455 - -0.2 4,558,455 - +0.2 4,558,455 - -0.4 4,558,610 + PFR28_03974 0.11 +1.1 4,558,610 + PFR28_03974 0.11 -0.3 4,558,611 - PFR28_03974 0.11 -0.1 4,558,611 - PFR28_03974 0.11 -0.5 4,558,616 + PFR28_03974 0.11 +0.8 4,558,616 + PFR28_03974 0.11 +1.3 4,558,617 - PFR28_03974 0.11 -1.9 4,558,617 - PFR28_03974 0.11 +2.3
Or see this region's nucleotide sequence