Strain Fitness in Pseudomonas sp. S08-1 around OH686_21970

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_21960 and OH686_21965 are separated by 243 nucleotidesOH686_21965 and OH686_21970 are separated by 40 nucleotidesOH686_21970 and OH686_21975 are separated by 9 nucleotides OH686_21960: OH686_21960 - repressor LexA, at 4,473,114 to 4,473,725 _21960 OH686_21965: OH686_21965 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 4,473,969 to 4,474,676 _21965 OH686_21970: OH686_21970 - L,D-transpeptidase, at 4,474,717 to 4,475,241 _21970 OH686_21975: OH686_21975 - beta-N-acetylglucosaminidase , at 4,475,251 to 4,476,261 _21975 Position (kb) 4474 4475 4476Strain fitness (log2 ratio) -3 -2 -1 0 1at 4473.762 kb on - strandat 4473.765 kb on + strandat 4473.854 kb on + strandat 4473.863 kb on + strandat 4473.863 kb on + strandat 4473.863 kb on + strandat 4473.863 kb on + strandat 4473.863 kb on + strandat 4473.863 kb on + strandat 4473.863 kb on + strandat 4473.863 kb on + strandat 4473.864 kb on - strandat 4473.864 kb on - strandat 4473.864 kb on - strandat 4473.864 kb on - strandat 4473.864 kb on - strandat 4473.864 kb on - strandat 4473.869 kb on + strandat 4473.869 kb on + strandat 4473.870 kb on - strandat 4473.870 kb on - strandat 4473.870 kb on - strandat 4473.870 kb on - strandat 4473.873 kb on + strandat 4473.873 kb on + strandat 4473.873 kb on + strandat 4473.873 kb on + strandat 4473.873 kb on + strandat 4473.874 kb on - strandat 4473.874 kb on - strandat 4473.874 kb on - strandat 4474.098 kb on + strand, within OH686_21965at 4474.098 kb on + strand, within OH686_21965at 4474.099 kb on - strand, within OH686_21965at 4474.351 kb on - strand, within OH686_21965at 4474.386 kb on + strand, within OH686_21965at 4474.386 kb on + strand, within OH686_21965at 4474.387 kb on - strand, within OH686_21965at 4474.532 kb on + strand, within OH686_21965at 4474.533 kb on - strand, within OH686_21965at 4474.533 kb on - strand, within OH686_21965at 4474.708 kb on + strandat 4474.709 kb on - strandat 4474.740 kb on + strandat 4474.740 kb on + strandat 4474.740 kb on + strandat 4474.740 kb on + strandat 4474.740 kb on + strandat 4474.740 kb on + strandat 4474.740 kb on + strandat 4474.740 kb on + strandat 4474.741 kb on - strandat 4474.741 kb on - strandat 4474.741 kb on - strandat 4474.741 kb on - strandat 4474.741 kb on - strandat 4474.741 kb on - strandat 4474.765 kb on + strandat 4474.765 kb on + strandat 4475.065 kb on + strand, within OH686_21970at 4475.065 kb on + strand, within OH686_21970at 4475.065 kb on + strand, within OH686_21970at 4475.065 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.071 kb on + strand, within OH686_21970at 4475.072 kb on - strand, within OH686_21970at 4475.072 kb on - strand, within OH686_21970at 4475.171 kb on + strand, within OH686_21970at 4475.239 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.256 kb on + strandat 4475.257 kb on - strandat 4475.257 kb on - strandat 4475.257 kb on - strandat 4475.896 kb on + strand, within OH686_21975at 4475.896 kb on + strand, within OH686_21975at 4475.897 kb on - strand, within OH686_21975at 4475.897 kb on - strand, within OH686_21975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
4,473,762 - -0.2
4,473,765 + -0.9
4,473,854 + -0.1
4,473,863 + +0.1
4,473,863 + -1.3
4,473,863 + -0.0
4,473,863 + +0.6
4,473,863 + +0.1
4,473,863 + -1.7
4,473,863 + +0.0
4,473,863 + +0.8
4,473,864 - -0.7
4,473,864 - +0.3
4,473,864 - +0.7
4,473,864 - -0.2
4,473,864 - +0.5
4,473,864 - +1.6
4,473,869 + -0.6
4,473,869 + -0.4
4,473,870 - +0.5
4,473,870 - -0.1
4,473,870 - -0.6
4,473,870 - +0.1
4,473,873 + -0.2
4,473,873 + -0.4
4,473,873 + -0.6
4,473,873 + -0.7
4,473,873 + -1.1
4,473,874 - -0.5
4,473,874 - +0.2
4,473,874 - -0.5
4,474,098 + OH686_21965 0.18 -0.7
4,474,098 + OH686_21965 0.18 +0.3
4,474,099 - OH686_21965 0.18 +0.9
4,474,351 - OH686_21965 0.54 +0.9
4,474,386 + OH686_21965 0.59 -0.1
4,474,386 + OH686_21965 0.59 -0.1
4,474,387 - OH686_21965 0.59 -0.1
4,474,532 + OH686_21965 0.80 +1.6
4,474,533 - OH686_21965 0.80 -0.9
4,474,533 - OH686_21965 0.80 -0.3
4,474,708 + +0.1
4,474,709 - +0.3
4,474,740 + -0.9
4,474,740 + -1.6
4,474,740 + -1.8
4,474,740 + -0.4
4,474,740 + -0.4
4,474,740 + -0.1
4,474,740 + -1.3
4,474,740 + -0.9
4,474,741 - -0.1
4,474,741 - -1.4
4,474,741 - -0.7
4,474,741 - -0.4
4,474,741 - -1.7
4,474,741 - -2.2
4,474,765 + -0.7
4,474,765 + -0.4
4,475,065 + OH686_21970 0.66 -1.8
4,475,065 + OH686_21970 0.66 -0.7
4,475,065 + OH686_21970 0.66 -1.4
4,475,065 + OH686_21970 0.66 -2.4
4,475,071 + OH686_21970 0.67 -1.1
4,475,071 + OH686_21970 0.67 -2.2
4,475,071 + OH686_21970 0.67 -1.9
4,475,071 + OH686_21970 0.67 -2.8
4,475,071 + OH686_21970 0.67 -0.7
4,475,071 + OH686_21970 0.67 -1.9
4,475,071 + OH686_21970 0.67 -2.6
4,475,071 + OH686_21970 0.67 -2.1
4,475,071 + OH686_21970 0.67 -1.7
4,475,072 - OH686_21970 0.68 -0.4
4,475,072 - OH686_21970 0.68 -1.7
4,475,171 + OH686_21970 0.86 -0.4
4,475,239 + +0.3
4,475,256 + -1.2
4,475,256 + +0.2
4,475,256 + +0.4
4,475,256 + -1.8
4,475,256 + +0.2
4,475,256 + -0.4
4,475,256 + -0.4
4,475,256 + +0.2
4,475,256 + -1.0
4,475,256 + -0.5
4,475,256 + -1.4
4,475,256 + -1.1
4,475,256 + +0.7
4,475,256 + -0.2
4,475,257 - -1.8
4,475,257 - +0.2
4,475,257 - -2.4
4,475,896 + OH686_21975 0.64 -1.0
4,475,896 + OH686_21975 0.64 -0.5
4,475,897 - OH686_21975 0.64 -0.4
4,475,897 - OH686_21975 0.64 -0.0

Or see this region's nucleotide sequence