Strain Fitness in Pseudomonas sp. S08-1 around OH686_19150

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_19140 and OH686_19145 are separated by 1 nucleotidesOH686_19145 and OH686_19150 are separated by 10 nucleotidesOH686_19150 and OH686_19155 overlap by 1 nucleotidesOH686_19155 and OH686_19160 overlap by 4 nucleotides OH686_19140: OH686_19140 - tol-pal system-associated acyl-CoA thioesterase, at 3,951,201 to 3,951,644 _19140 OH686_19145: OH686_19145 - protein TolQ, at 3,951,646 to 3,952,347 _19145 OH686_19150: OH686_19150 - protein TolR, at 3,952,358 to 3,952,816 _19150 OH686_19155: OH686_19155 - protein TolA, at 3,952,816 to 3,953,772 _19155 OH686_19160: OH686_19160 - Tol-Pal system beta propeller repeat protein TolB, at 3,953,769 to 3,955,067 _19160 Position (kb) 3952 3953Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3951.409 kb on - strand, within OH686_19140at 3951.443 kb on + strand, within OH686_19140at 3951.444 kb on - strand, within OH686_19140at 3951.444 kb on - strand, within OH686_19140at 3951.444 kb on - strand, within OH686_19140at 3951.444 kb on - strand, within OH686_19140at 3951.457 kb on + strand, within OH686_19140at 3951.457 kb on + strand, within OH686_19140at 3951.458 kb on - strand, within OH686_19140at 3951.458 kb on - strand, within OH686_19140at 3951.458 kb on - strand, within OH686_19140at 3951.458 kb on - strand, within OH686_19140at 3951.458 kb on - strand, within OH686_19140at 3951.467 kb on - strand, within OH686_19140at 3951.467 kb on - strand, within OH686_19140at 3951.467 kb on - strand, within OH686_19140at 3951.500 kb on - strand, within OH686_19140at 3951.500 kb on - strand, within OH686_19140

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,951,409 - OH686_19140 0.47 -0.1
3,951,443 + OH686_19140 0.55 +2.8
3,951,444 - OH686_19140 0.55 -0.2
3,951,444 - OH686_19140 0.55 -1.3
3,951,444 - OH686_19140 0.55 +0.9
3,951,444 - OH686_19140 0.55 -0.2
3,951,457 + OH686_19140 0.58 +0.0
3,951,457 + OH686_19140 0.58 +0.3
3,951,458 - OH686_19140 0.58 -1.5
3,951,458 - OH686_19140 0.58 -1.8
3,951,458 - OH686_19140 0.58 -0.4
3,951,458 - OH686_19140 0.58 +0.2
3,951,458 - OH686_19140 0.58 -1.1
3,951,467 - OH686_19140 0.60 -0.3
3,951,467 - OH686_19140 0.60 -1.3
3,951,467 - OH686_19140 0.60 -0.5
3,951,500 - OH686_19140 0.67 +0.3
3,951,500 - OH686_19140 0.67 +0.3

Or see this region's nucleotide sequence