Strain Fitness in Pseudomonas sp. S08-1 around OH686_15210

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_15205 and OH686_15210 are separated by 1 nucleotidesOH686_15210 and OH686_15215 are separated by 181 nucleotides OH686_15205: OH686_15205 - Anhydro-N-acetylmuramic acid kinase , at 3,189,535 to 3,190,626 _15205 OH686_15210: OH686_15210 - Peptidase, M23/M37 family, at 3,190,628 to 3,192,031 _15210 OH686_15215: OH686_15215 - tyrosine--tRNA ligase, at 3,192,213 to 3,193,412 _15215 Position (kb) 3190 3191 3192 3193Strain fitness (log2 ratio) -2 -1 0 1at 3189.692 kb on - strand, within OH686_15205at 3189.692 kb on - strand, within OH686_15205at 3189.702 kb on + strand, within OH686_15205at 3189.702 kb on + strand, within OH686_15205at 3189.702 kb on + strand, within OH686_15205at 3189.703 kb on - strand, within OH686_15205at 3189.703 kb on - strand, within OH686_15205at 3189.703 kb on - strand, within OH686_15205at 3189.703 kb on - strand, within OH686_15205at 3189.703 kb on - strand, within OH686_15205at 3189.703 kb on - strand, within OH686_15205at 3189.947 kb on + strand, within OH686_15205at 3189.947 kb on + strand, within OH686_15205at 3189.947 kb on + strand, within OH686_15205at 3189.948 kb on - strand, within OH686_15205at 3189.948 kb on - strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.255 kb on + strand, within OH686_15205at 3190.256 kb on - strand, within OH686_15205at 3190.256 kb on - strand, within OH686_15205at 3190.256 kb on - strand, within OH686_15205at 3190.256 kb on - strand, within OH686_15205at 3190.256 kb on - strand, within OH686_15205at 3190.256 kb on - strand, within OH686_15205at 3190.308 kb on + strand, within OH686_15205at 3190.309 kb on - strand, within OH686_15205at 3190.483 kb on + strand, within OH686_15205at 3190.483 kb on + strand, within OH686_15205at 3190.483 kb on + strand, within OH686_15205at 3190.483 kb on + strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.484 kb on - strand, within OH686_15205at 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.526 kb on + strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.527 kb on - strandat 3190.554 kb on + strandat 3190.555 kb on - strandat 3190.597 kb on - strandat 3190.617 kb on - strandat 3190.617 kb on - strandat 3190.626 kb on + strandat 3190.627 kb on - strandat 3192.062 kb on - strandat 3192.076 kb on + strandat 3192.092 kb on + strandat 3192.092 kb on + strandat 3192.092 kb on + strandat 3192.093 kb on - strandat 3192.093 kb on - strandat 3192.140 kb on + strandat 3192.140 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,189,692 - OH686_15205 0.14 -0.6
3,189,692 - OH686_15205 0.14 -1.2
3,189,702 + OH686_15205 0.15 +0.2
3,189,702 + OH686_15205 0.15 -1.0
3,189,702 + OH686_15205 0.15 -0.5
3,189,703 - OH686_15205 0.15 -0.4
3,189,703 - OH686_15205 0.15 -0.7
3,189,703 - OH686_15205 0.15 +1.7
3,189,703 - OH686_15205 0.15 -0.8
3,189,703 - OH686_15205 0.15 -0.2
3,189,703 - OH686_15205 0.15 -0.1
3,189,947 + OH686_15205 0.38 -1.2
3,189,947 + OH686_15205 0.38 -0.9
3,189,947 + OH686_15205 0.38 -0.3
3,189,948 - OH686_15205 0.38 -0.4
3,189,948 - OH686_15205 0.38 +0.0
3,190,255 + OH686_15205 0.66 -0.1
3,190,255 + OH686_15205 0.66 -0.0
3,190,255 + OH686_15205 0.66 +0.3
3,190,255 + OH686_15205 0.66 -0.3
3,190,255 + OH686_15205 0.66 -0.5
3,190,255 + OH686_15205 0.66 -0.1
3,190,255 + OH686_15205 0.66 +0.6
3,190,255 + OH686_15205 0.66 -0.5
3,190,256 - OH686_15205 0.66 -0.1
3,190,256 - OH686_15205 0.66 +1.0
3,190,256 - OH686_15205 0.66 -2.0
3,190,256 - OH686_15205 0.66 +0.6
3,190,256 - OH686_15205 0.66 -2.5
3,190,256 - OH686_15205 0.66 -0.1
3,190,308 + OH686_15205 0.71 -1.2
3,190,309 - OH686_15205 0.71 -0.1
3,190,483 + OH686_15205 0.87 -0.8
3,190,483 + OH686_15205 0.87 -0.2
3,190,483 + OH686_15205 0.87 -0.8
3,190,483 + OH686_15205 0.87 -1.1
3,190,484 - OH686_15205 0.87 +0.2
3,190,484 - OH686_15205 0.87 +0.1
3,190,484 - OH686_15205 0.87 -1.3
3,190,484 - OH686_15205 0.87 -0.4
3,190,484 - OH686_15205 0.87 -1.7
3,190,484 - OH686_15205 0.87 -0.1
3,190,484 - OH686_15205 0.87 -1.1
3,190,484 - OH686_15205 0.87 +0.9
3,190,484 - OH686_15205 0.87 -0.1
3,190,526 + -0.8
3,190,526 + -0.4
3,190,526 + -1.2
3,190,526 + -1.2
3,190,526 + -0.3
3,190,526 + -0.3
3,190,526 + +0.2
3,190,526 + +0.7
3,190,526 + -0.3
3,190,526 + -0.6
3,190,526 + -0.5
3,190,526 + -0.2
3,190,526 + +0.4
3,190,526 + -1.8
3,190,526 + -0.0
3,190,526 + +0.8
3,190,526 + +0.4
3,190,526 + +0.6
3,190,526 + +0.4
3,190,526 + -0.2
3,190,526 + +0.0
3,190,526 + +0.7
3,190,527 - +0.0
3,190,527 - +0.1
3,190,527 - -0.5
3,190,527 - +0.1
3,190,527 - -0.8
3,190,527 - -1.3
3,190,527 - -0.8
3,190,527 - -0.7
3,190,527 - +0.4
3,190,527 - -0.5
3,190,527 - -0.4
3,190,527 - -0.5
3,190,527 - -0.2
3,190,527 - -1.7
3,190,527 - -0.6
3,190,527 - -0.6
3,190,527 - -0.6
3,190,554 + -0.1
3,190,555 - +1.3
3,190,597 - +0.1
3,190,617 - -0.6
3,190,617 - -0.7
3,190,626 + +0.3
3,190,627 - +0.1
3,192,062 - +0.1
3,192,076 + -1.7
3,192,092 + -2.6
3,192,092 + -0.4
3,192,092 + -1.1
3,192,093 - -0.3
3,192,093 - -0.4
3,192,140 + -0.1
3,192,140 + -0.3
3,192,149 + +0.3
3,192,149 + +0.4
3,192,149 + +0.7
3,192,149 + -0.1
3,192,149 + +1.1
3,192,149 + +1.2
3,192,149 + -0.7
3,192,168 + +0.9
3,192,168 + -0.2
3,192,168 + +0.7
3,192,168 + -2.1
3,192,168 + -0.4
3,192,168 + +0.6
3,192,168 + -0.5
3,192,168 + +0.6

Or see this region's nucleotide sequence