Strain Fitness in Pseudomonas sp. S08-1 around OH686_08500

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08490 and OH686_08495 overlap by 4 nucleotidesOH686_08495 and OH686_08500 overlap by 4 nucleotidesOH686_08500 and OH686_08505 overlap by 1 nucleotidesOH686_08505 and OH686_08510 overlap by 1 nucleotides OH686_08490: OH686_08490 - Phospholipid ABC transporter-binding protein MlaB, at 1,728,660 to 1,728,968 _08490 OH686_08495: OH686_08495 - Phospholipid ABC transporter shuttle protein MlaC, at 1,728,965 to 1,729,618 _08495 OH686_08500: OH686_08500 - outer membrane lipid asymmetry maintenance protein MlaD, at 1,729,615 to 1,730,082 _08500 OH686_08505: OH686_08505 - Phospholipid ABC transporter permease protein MlaE, at 1,730,082 to 1,730,879 _08505 OH686_08510: OH686_08510 - Phospholipid ABC transporter ATP-binding protein MlaF, at 1,730,879 to 1,731,688 _08510 Position (kb) 1729 1730 1731Strain fitness (log2 ratio) -1 0 1at 1728.640 kb on + strandat 1728.641 kb on - strandat 1728.653 kb on + strandat 1728.653 kb on + strandat 1728.654 kb on - strandat 1728.654 kb on - strandat 1728.654 kb on - strandat 1728.654 kb on - strandat 1728.661 kb on + strandat 1728.661 kb on + strandat 1728.661 kb on + strandat 1728.662 kb on - strandat 1728.662 kb on - strandat 1728.904 kb on + strand, within OH686_08490at 1729.072 kb on + strand, within OH686_08495at 1729.072 kb on + strand, within OH686_08495at 1729.072 kb on + strand, within OH686_08495at 1729.072 kb on + strand, within OH686_08495at 1729.072 kb on + strand, within OH686_08495at 1729.073 kb on - strand, within OH686_08495at 1729.073 kb on - strand, within OH686_08495at 1729.073 kb on - strand, within OH686_08495at 1729.170 kb on + strand, within OH686_08495at 1729.278 kb on + strand, within OH686_08495at 1729.279 kb on - strand, within OH686_08495at 1729.300 kb on - strand, within OH686_08495at 1729.371 kb on + strand, within OH686_08495at 1729.372 kb on - strand, within OH686_08495at 1729.372 kb on - strand, within OH686_08495at 1729.429 kb on + strand, within OH686_08495at 1729.430 kb on - strand, within OH686_08495at 1729.446 kb on + strand, within OH686_08495at 1729.446 kb on + strand, within OH686_08495at 1729.629 kb on + strandat 1729.751 kb on + strand, within OH686_08500at 1729.751 kb on + strand, within OH686_08500at 1729.752 kb on - strand, within OH686_08500at 1729.752 kb on - strand, within OH686_08500at 1729.752 kb on - strand, within OH686_08500at 1729.752 kb on - strand, within OH686_08500at 1729.850 kb on + strand, within OH686_08500at 1729.850 kb on + strand, within OH686_08500at 1729.850 kb on + strand, within OH686_08500at 1729.851 kb on - strand, within OH686_08500at 1729.964 kb on + strand, within OH686_08500at 1729.964 kb on + strand, within OH686_08500at 1729.964 kb on + strand, within OH686_08500at 1729.964 kb on + strand, within OH686_08500at 1730.114 kb on + strandat 1730.146 kb on + strandat 1730.146 kb on + strandat 1730.146 kb on + strandat 1730.146 kb on + strandat 1730.146 kb on + strandat 1730.146 kb on + strandat 1730.326 kb on + strand, within OH686_08505at 1730.326 kb on + strand, within OH686_08505at 1730.326 kb on + strand, within OH686_08505at 1730.326 kb on + strand, within OH686_08505at 1730.443 kb on + strand, within OH686_08505at 1730.443 kb on + strand, within OH686_08505at 1730.443 kb on + strand, within OH686_08505at 1730.444 kb on - strand, within OH686_08505at 1730.642 kb on + strand, within OH686_08505at 1730.642 kb on + strand, within OH686_08505at 1730.644 kb on + strand, within OH686_08505at 1730.873 kb on + strandat 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.049 kb on - strand, within OH686_08510at 1731.049 kb on - strand, within OH686_08510

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,728,640 + -0.5
1,728,641 - +0.2
1,728,653 + +0.1
1,728,653 + +0.2
1,728,654 - +0.8
1,728,654 - -0.1
1,728,654 - -0.3
1,728,654 - -0.3
1,728,661 + +0.0
1,728,661 + +0.2
1,728,661 + +0.7
1,728,662 - +0.6
1,728,662 - -0.6
1,728,904 + OH686_08490 0.79 -0.4
1,729,072 + OH686_08495 0.16 -0.7
1,729,072 + OH686_08495 0.16 -0.4
1,729,072 + OH686_08495 0.16 -0.4
1,729,072 + OH686_08495 0.16 -0.4
1,729,072 + OH686_08495 0.16 -0.1
1,729,073 - OH686_08495 0.17 -0.4
1,729,073 - OH686_08495 0.17 -0.1
1,729,073 - OH686_08495 0.17 -0.1
1,729,170 + OH686_08495 0.31 -0.7
1,729,278 + OH686_08495 0.48 -0.1
1,729,279 - OH686_08495 0.48 -0.4
1,729,300 - OH686_08495 0.51 -0.1
1,729,371 + OH686_08495 0.62 -0.4
1,729,372 - OH686_08495 0.62 -0.9
1,729,372 - OH686_08495 0.62 -0.7
1,729,429 + OH686_08495 0.71 -0.7
1,729,430 - OH686_08495 0.71 -0.1
1,729,446 + OH686_08495 0.74 +0.6
1,729,446 + OH686_08495 0.74 -0.7
1,729,629 + -0.1
1,729,751 + OH686_08500 0.29 -0.1
1,729,751 + OH686_08500 0.29 -0.1
1,729,752 - OH686_08500 0.29 -0.7
1,729,752 - OH686_08500 0.29 -0.1
1,729,752 - OH686_08500 0.29 -0.1
1,729,752 - OH686_08500 0.29 -1.7
1,729,850 + OH686_08500 0.50 -0.1
1,729,850 + OH686_08500 0.50 -0.4
1,729,850 + OH686_08500 0.50 -1.4
1,729,851 - OH686_08500 0.50 -0.1
1,729,964 + OH686_08500 0.75 -0.4
1,729,964 + OH686_08500 0.75 -0.1
1,729,964 + OH686_08500 0.75 -0.9
1,729,964 + OH686_08500 0.75 -0.1
1,730,114 + -0.1
1,730,146 + -0.4
1,730,146 + -0.4
1,730,146 + -0.1
1,730,146 + -0.4
1,730,146 + +1.2
1,730,146 + -0.4
1,730,326 + OH686_08505 0.31 -0.7
1,730,326 + OH686_08505 0.31 -0.7
1,730,326 + OH686_08505 0.31 -0.1
1,730,326 + OH686_08505 0.31 -0.1
1,730,443 + OH686_08505 0.45 -0.4
1,730,443 + OH686_08505 0.45 -0.4
1,730,443 + OH686_08505 0.45 -0.4
1,730,444 - OH686_08505 0.45 -0.1
1,730,642 + OH686_08505 0.70 -1.1
1,730,642 + OH686_08505 0.70 -0.4
1,730,644 + OH686_08505 0.70 -0.1
1,730,873 + -0.4
1,731,042 + OH686_08510 0.20 -0.1
1,731,042 + OH686_08510 0.20 -0.1
1,731,042 + OH686_08510 0.20 -0.1
1,731,042 + OH686_08510 0.20 -0.1
1,731,042 + OH686_08510 0.20 -0.1
1,731,042 + OH686_08510 0.20 -0.4
1,731,042 + OH686_08510 0.20 -0.1
1,731,042 + OH686_08510 0.20 -0.9
1,731,042 + OH686_08510 0.20 -0.1
1,731,042 + OH686_08510 0.20 -1.1
1,731,042 + OH686_08510 0.20 -0.4
1,731,042 + OH686_08510 0.20 -1.1
1,731,042 + OH686_08510 0.20 -0.1
1,731,043 - OH686_08510 0.20 -0.4
1,731,043 - OH686_08510 0.20 -0.9
1,731,043 - OH686_08510 0.20 -0.1
1,731,043 - OH686_08510 0.20 -0.1
1,731,043 - OH686_08510 0.20 -0.1
1,731,049 - OH686_08510 0.21 -0.1
1,731,049 - OH686_08510 0.21 -0.7

Or see this region's nucleotide sequence