Strain Fitness in Pseudomonas sp. S08-1 around OH686_02690

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02680 and OH686_02685 are separated by 3 nucleotidesOH686_02685 and OH686_02690 are separated by 79 nucleotidesOH686_02690 and OH686_02695 are separated by 85 nucleotidesOH686_02695 and OH686_02700 are separated by 52 nucleotides OH686_02680: OH686_02680 - hypothetical protein, at 566,249 to 566,653 _02680 OH686_02685: OH686_02685 - Positive regulator of CheA protein activity (CheW), at 566,657 to 567,136 _02685 OH686_02690: OH686_02690 - CheW domain protein, at 567,216 to 568,040 _02690 OH686_02695: OH686_02695 - ParA-like protein, at 568,126 to 568,914 _02695 OH686_02700: OH686_02700 - Flagellar motor rotation protein MotB, at 568,967 to 569,851 _02700 Position (kb) 567 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 566.237 kb on + strandat 566.237 kb on + strandat 566.237 kb on + strandat 566.237 kb on + strandat 566.237 kb on + strandat 566.237 kb on + strandat 566.238 kb on - strandat 566.238 kb on - strandat 566.238 kb on - strandat 566.238 kb on - strandat 566.238 kb on - strandat 566.490 kb on + strand, within OH686_02680at 566.490 kb on + strand, within OH686_02680at 566.490 kb on + strand, within OH686_02680at 566.491 kb on - strand, within OH686_02680at 566.491 kb on - strand, within OH686_02680at 566.593 kb on - strand, within OH686_02680at 566.817 kb on + strand, within OH686_02685at 566.817 kb on + strand, within OH686_02685at 566.817 kb on + strand, within OH686_02685at 566.817 kb on + strand, within OH686_02685at 566.817 kb on + strand, within OH686_02685at 566.818 kb on - strand, within OH686_02685at 566.818 kb on - strand, within OH686_02685at 566.981 kb on + strand, within OH686_02685at 566.981 kb on + strand, within OH686_02685at 566.981 kb on + strand, within OH686_02685at 566.981 kb on + strand, within OH686_02685at 566.982 kb on - strand, within OH686_02685at 566.982 kb on - strand, within OH686_02685at 566.982 kb on - strand, within OH686_02685at 566.982 kb on - strand, within OH686_02685at 566.985 kb on + strand, within OH686_02685at 566.985 kb on + strand, within OH686_02685at 566.985 kb on + strand, within OH686_02685at 566.985 kb on + strand, within OH686_02685at 566.985 kb on + strand, within OH686_02685at 566.985 kb on + strand, within OH686_02685at 566.985 kb on + strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 566.986 kb on - strand, within OH686_02685at 567.021 kb on + strand, within OH686_02685at 567.021 kb on + strand, within OH686_02685at 567.021 kb on + strand, within OH686_02685at 567.021 kb on + strand, within OH686_02685at 567.022 kb on - strand, within OH686_02685at 567.060 kb on + strand, within OH686_02685at 567.060 kb on + strand, within OH686_02685at 567.060 kb on + strand, within OH686_02685at 567.060 kb on + strand, within OH686_02685at 567.061 kb on - strand, within OH686_02685at 567.061 kb on - strand, within OH686_02685at 567.061 kb on - strand, within OH686_02685at 567.061 kb on - strand, within OH686_02685at 567.061 kb on - strand, within OH686_02685at 567.061 kb on - strand, within OH686_02685at 567.181 kb on - strandat 567.181 kb on - strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.184 kb on + strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.185 kb on - strandat 567.187 kb on - strandat 567.187 kb on - strandat 567.187 kb on - strandat 567.399 kb on + strand, within OH686_02690at 567.399 kb on + strand, within OH686_02690at 567.400 kb on - strand, within OH686_02690at 567.400 kb on - strand, within OH686_02690at 567.427 kb on - strand, within OH686_02690at 567.439 kb on + strand, within OH686_02690at 567.439 kb on + strand, within OH686_02690at 567.439 kb on + strand, within OH686_02690at 567.439 kb on + strand, within OH686_02690at 567.440 kb on - strand, within OH686_02690at 567.440 kb on - strand, within OH686_02690at 567.440 kb on - strand, within OH686_02690at 567.440 kb on - strand, within OH686_02690at 567.612 kb on + strand, within OH686_02690at 567.612 kb on + strand, within OH686_02690at 567.612 kb on + strand, within OH686_02690at 567.613 kb on - strand, within OH686_02690at 567.613 kb on - strand, within OH686_02690at 567.642 kb on + strand, within OH686_02690at 567.642 kb on + strand, within OH686_02690at 567.988 kb on + strandat 568.040 kb on + strandat 568.041 kb on - strandat 568.041 kb on - strandat 568.057 kb on + strandat 568.057 kb on + strandat 568.057 kb on + strandat 568.057 kb on + strandat 568.057 kb on + strandat 568.057 kb on + strandat 568.057 kb on + strandat 568.057 kb on + strandat 568.058 kb on - strandat 568.058 kb on - strandat 568.058 kb on - strandat 568.064 kb on + strandat 568.064 kb on + strandat 568.065 kb on - strandat 568.071 kb on + strandat 568.114 kb on + strandat 568.114 kb on + strandat 568.114 kb on + strandat 568.114 kb on + strandat 568.115 kb on - strandat 568.132 kb on + strandat 568.132 kb on + strandat 568.133 kb on - strandat 568.271 kb on + strand, within OH686_02695at 568.271 kb on + strand, within OH686_02695at 568.271 kb on + strand, within OH686_02695at 568.271 kb on + strand, within OH686_02695at 568.271 kb on + strand, within OH686_02695at 568.271 kb on + strand, within OH686_02695at 568.271 kb on + strand, within OH686_02695at 568.272 kb on - strand, within OH686_02695at 568.272 kb on - strand, within OH686_02695at 568.272 kb on - strand, within OH686_02695at 568.272 kb on - strand, within OH686_02695at 568.272 kb on - strand, within OH686_02695at 568.321 kb on - strand, within OH686_02695at 568.370 kb on + strand, within OH686_02695at 568.370 kb on + strand, within OH686_02695at 568.370 kb on + strand, within OH686_02695at 568.370 kb on + strand, within OH686_02695at 568.370 kb on + strand, within OH686_02695at 568.370 kb on + strand, within OH686_02695at 568.370 kb on + strand, within OH686_02695at 568.371 kb on - strand, within OH686_02695at 568.371 kb on - strand, within OH686_02695at 568.386 kb on + strand, within OH686_02695at 568.387 kb on - strand, within OH686_02695at 568.422 kb on + strand, within OH686_02695at 568.422 kb on + strand, within OH686_02695at 568.423 kb on - strand, within OH686_02695at 568.423 kb on - strand, within OH686_02695at 568.775 kb on + strand, within OH686_02695at 568.775 kb on + strand, within OH686_02695at 568.775 kb on + strand, within OH686_02695at 568.775 kb on + strand, within OH686_02695at 568.775 kb on + strand, within OH686_02695at 568.776 kb on - strand, within OH686_02695at 568.776 kb on - strand, within OH686_02695at 568.776 kb on - strand, within OH686_02695at 568.776 kb on - strand, within OH686_02695at 568.897 kb on + strandat 568.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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566,237 + +1.2
566,237 + -0.2
566,237 + -0.1
566,237 + -0.1
566,237 + +1.6
566,237 + -1.2
566,238 - -1.0
566,238 - +1.9
566,238 - -0.6
566,238 - +0.4
566,238 - +1.3
566,490 + OH686_02680 0.60 +0.4
566,490 + OH686_02680 0.60 +0.2
566,490 + OH686_02680 0.60 -0.6
566,491 - OH686_02680 0.60 +0.1
566,491 - OH686_02680 0.60 +0.3
566,593 - OH686_02680 0.85 -0.5
566,817 + OH686_02685 0.33 +0.3
566,817 + OH686_02685 0.33 +1.4
566,817 + OH686_02685 0.33 -1.5
566,817 + OH686_02685 0.33 -1.0
566,817 + OH686_02685 0.33 -0.3
566,818 - OH686_02685 0.34 -0.4
566,818 - OH686_02685 0.34 -0.7
566,981 + OH686_02685 0.68 -0.8
566,981 + OH686_02685 0.68 -1.5
566,981 + OH686_02685 0.68 -0.4
566,981 + OH686_02685 0.68 -2.0
566,982 - OH686_02685 0.68 -0.4
566,982 - OH686_02685 0.68 +1.4
566,982 - OH686_02685 0.68 -0.8
566,982 - OH686_02685 0.68 -0.3
566,985 + OH686_02685 0.68 -1.1
566,985 + OH686_02685 0.68 -0.3
566,985 + OH686_02685 0.68 +0.2
566,985 + OH686_02685 0.68 -0.2
566,985 + OH686_02685 0.68 +1.6
566,985 + OH686_02685 0.68 +1.0
566,985 + OH686_02685 0.68 +1.9
566,986 - OH686_02685 0.69 +2.2
566,986 - OH686_02685 0.69 -0.0
566,986 - OH686_02685 0.69 +0.1
566,986 - OH686_02685 0.69 -1.7
566,986 - OH686_02685 0.69 -0.2
566,986 - OH686_02685 0.69 +0.7
566,986 - OH686_02685 0.69 -0.7
566,986 - OH686_02685 0.69 -0.0
567,021 + OH686_02685 0.76 -0.5
567,021 + OH686_02685 0.76 +0.0
567,021 + OH686_02685 0.76 +0.6
567,021 + OH686_02685 0.76 -0.2
567,022 - OH686_02685 0.76 -1.5
567,060 + OH686_02685 0.84 -0.1
567,060 + OH686_02685 0.84 -0.2
567,060 + OH686_02685 0.84 +0.3
567,060 + OH686_02685 0.84 -1.0
567,061 - OH686_02685 0.84 +0.2
567,061 - OH686_02685 0.84 -0.7
567,061 - OH686_02685 0.84 -0.2
567,061 - OH686_02685 0.84 -0.6
567,061 - OH686_02685 0.84 -1.1
567,061 - OH686_02685 0.84 -0.0
567,181 - -0.4
567,181 - -0.4
567,184 + +0.5
567,184 + +1.6
567,184 + +0.8
567,184 + +0.5
567,184 + -0.5
567,184 + -0.2
567,184 + -0.5
567,184 + -0.5
567,184 + -0.9
567,184 + +0.1
567,184 + +0.1
567,184 + +0.4
567,184 + -0.4
567,184 + -1.3
567,184 + +0.0
567,184 + -0.1
567,185 - +0.3
567,185 - -0.8
567,185 - +0.7
567,185 - +0.7
567,185 - -0.6
567,185 - +0.7
567,185 - +1.1
567,185 - +0.2
567,185 - +0.8
567,185 - +0.9
567,185 - -1.2
567,185 - -0.0
567,185 - -0.1
567,187 - -1.1
567,187 - +0.4
567,187 - -0.1
567,399 + OH686_02690 0.22 +0.4
567,399 + OH686_02690 0.22 -0.8
567,400 - OH686_02690 0.22 +0.2
567,400 - OH686_02690 0.22 +0.2
567,427 - OH686_02690 0.26 -1.0
567,439 + OH686_02690 0.27 -0.1
567,439 + OH686_02690 0.27 -0.4
567,439 + OH686_02690 0.27 +0.5
567,439 + OH686_02690 0.27 +0.6
567,440 - OH686_02690 0.27 -0.3
567,440 - OH686_02690 0.27 -0.7
567,440 - OH686_02690 0.27 -0.5
567,440 - OH686_02690 0.27 -1.7
567,612 + OH686_02690 0.48 +0.1
567,612 + OH686_02690 0.48 -0.2
567,612 + OH686_02690 0.48 +0.6
567,613 - OH686_02690 0.48 -0.5
567,613 - OH686_02690 0.48 +1.0
567,642 + OH686_02690 0.52 +1.2
567,642 + OH686_02690 0.52 -0.8
567,988 + -0.8
568,040 + -0.3
568,041 - +0.6
568,041 - +0.4
568,057 + -0.0
568,057 + -3.2
568,057 + -0.4
568,057 + -0.0
568,057 + +0.0
568,057 + +0.7
568,057 + +0.8
568,057 + -0.3
568,058 - +0.0
568,058 - +0.4
568,058 - -0.2
568,064 + -0.5
568,064 + +0.6
568,065 - +0.3
568,071 + -0.2
568,114 + -0.7
568,114 + +0.4
568,114 + -0.6
568,114 + +0.1
568,115 - -0.2
568,132 + -0.2
568,132 + +1.7
568,133 - +0.4
568,271 + OH686_02695 0.18 +0.2
568,271 + OH686_02695 0.18 -0.0
568,271 + OH686_02695 0.18 -0.2
568,271 + OH686_02695 0.18 -2.3
568,271 + OH686_02695 0.18 +0.1
568,271 + OH686_02695 0.18 -1.8
568,271 + OH686_02695 0.18 +0.7
568,272 - OH686_02695 0.19 -0.3
568,272 - OH686_02695 0.19 -0.3
568,272 - OH686_02695 0.19 -0.6
568,272 - OH686_02695 0.19 -0.2
568,272 - OH686_02695 0.19 +0.8
568,321 - OH686_02695 0.25 -0.8
568,370 + OH686_02695 0.31 -0.3
568,370 + OH686_02695 0.31 -0.1
568,370 + OH686_02695 0.31 +0.7
568,370 + OH686_02695 0.31 -0.4
568,370 + OH686_02695 0.31 +1.7
568,370 + OH686_02695 0.31 +0.6
568,370 + OH686_02695 0.31 +0.0
568,371 - OH686_02695 0.31 -0.7
568,371 - OH686_02695 0.31 -0.6
568,386 + OH686_02695 0.33 -0.2
568,387 - OH686_02695 0.33 -0.3
568,422 + OH686_02695 0.38 +0.2
568,422 + OH686_02695 0.38 -1.0
568,423 - OH686_02695 0.38 +0.2
568,423 - OH686_02695 0.38 -1.3
568,775 + OH686_02695 0.82 -0.2
568,775 + OH686_02695 0.82 -0.1
568,775 + OH686_02695 0.82 -0.0
568,775 + OH686_02695 0.82 +0.1
568,775 + OH686_02695 0.82 +0.3
568,776 - OH686_02695 0.82 -0.2
568,776 - OH686_02695 0.82 -1.2
568,776 - OH686_02695 0.82 -0.4
568,776 - OH686_02695 0.82 -0.6
568,897 + -0.6
568,898 - -1.1

Or see this region's nucleotide sequence