Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23680 and ABIE41_RS23685 are separated by 186 nucleotides ABIE41_RS23685 and ABIE41_RS23690 are separated by 11 nucleotides ABIE41_RS23690 and ABIE41_RS23695 are separated by 127 nucleotides
ABIE41_RS23680: ABIE41_RS23680 - FCD domain-containing protein, at 4,880,736 to 4,881,494
_RS23680
ABIE41_RS23685: ABIE41_RS23685 - ABC transporter ATP-binding protein, at 4,881,681 to 4,882,460
_RS23685
ABIE41_RS23690: ABIE41_RS23690 - ABC transporter permease, at 4,882,472 to 4,883,245
_RS23690
ABIE41_RS23695: ABIE41_RS23695 - ABC transporter substrate-binding protein, at 4,883,373 to 4,884,335
_RS23695
Position (kb) 4881
4882
4883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4880.685 kb on + strand at 4880.685 kb on + strand at 4880.685 kb on + strand at 4880.685 kb on + strand at 4880.685 kb on + strand at 4880.686 kb on - strand at 4880.686 kb on - strand at 4880.947 kb on + strand, within ABIE41_RS23680 at 4880.948 kb on - strand, within ABIE41_RS23680 at 4880.948 kb on - strand, within ABIE41_RS23680 at 4880.968 kb on + strand, within ABIE41_RS23680 at 4880.968 kb on + strand, within ABIE41_RS23680 at 4880.968 kb on + strand, within ABIE41_RS23680 at 4880.969 kb on - strand, within ABIE41_RS23680 at 4881.277 kb on + strand, within ABIE41_RS23680 at 4881.277 kb on + strand, within ABIE41_RS23680 at 4881.278 kb on - strand, within ABIE41_RS23680 at 4881.278 kb on - strand, within ABIE41_RS23680 at 4881.278 kb on - strand, within ABIE41_RS23680 at 4881.278 kb on - strand, within ABIE41_RS23680 at 4881.278 kb on - strand, within ABIE41_RS23680 at 4881.278 kb on - strand, within ABIE41_RS23680 at 4881.413 kb on - strand, within ABIE41_RS23680 at 4881.460 kb on + strand at 4881.500 kb on - strand at 4881.769 kb on + strand, within ABIE41_RS23685 at 4882.201 kb on + strand, within ABIE41_RS23685 at 4882.201 kb on + strand, within ABIE41_RS23685 at 4882.201 kb on + strand, within ABIE41_RS23685 at 4882.201 kb on + strand, within ABIE41_RS23685 at 4882.202 kb on - strand, within ABIE41_RS23685 at 4882.202 kb on - strand, within ABIE41_RS23685 at 4882.202 kb on - strand, within ABIE41_RS23685 at 4882.202 kb on - strand, within ABIE41_RS23685 at 4882.474 kb on - strand at 4882.474 kb on - strand at 4882.474 kb on - strand at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.656 kb on + strand, within ABIE41_RS23690 at 4882.657 kb on - strand, within ABIE41_RS23690 at 4882.657 kb on - strand, within ABIE41_RS23690 at 4882.657 kb on - strand, within ABIE41_RS23690 at 4882.657 kb on - strand, within ABIE41_RS23690 at 4882.765 kb on - strand, within ABIE41_RS23690 at 4882.971 kb on + strand, within ABIE41_RS23690 at 4882.972 kb on - strand, within ABIE41_RS23690 at 4882.972 kb on - strand, within ABIE41_RS23690 at 4882.972 kb on - strand, within ABIE41_RS23690 at 4883.073 kb on + strand, within ABIE41_RS23690 at 4883.091 kb on + strand, within ABIE41_RS23690 at 4883.092 kb on - strand, within ABIE41_RS23690 at 4883.143 kb on - strand, within ABIE41_RS23690 at 4883.143 kb on - strand, within ABIE41_RS23690 at 4883.389 kb on + strand at 4883.389 kb on + strand at 4883.389 kb on + strand at 4883.390 kb on - strand at 4883.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 4,880,685 + +0.3 4,880,685 + +0.2 4,880,685 + -1.0 4,880,685 + +0.6 4,880,685 + +0.3 4,880,686 - -0.5 4,880,686 - -1.0 4,880,947 + ABIE41_RS23680 0.28 -0.8 4,880,948 - ABIE41_RS23680 0.28 +0.1 4,880,948 - ABIE41_RS23680 0.28 -0.0 4,880,968 + ABIE41_RS23680 0.31 -1.4 4,880,968 + ABIE41_RS23680 0.31 +0.1 4,880,968 + ABIE41_RS23680 0.31 -1.0 4,880,969 - ABIE41_RS23680 0.31 +0.5 4,881,277 + ABIE41_RS23680 0.71 -1.5 4,881,277 + ABIE41_RS23680 0.71 +0.3 4,881,278 - ABIE41_RS23680 0.71 -1.8 4,881,278 - ABIE41_RS23680 0.71 -1.3 4,881,278 - ABIE41_RS23680 0.71 -0.4 4,881,278 - ABIE41_RS23680 0.71 +0.9 4,881,278 - ABIE41_RS23680 0.71 -0.6 4,881,278 - ABIE41_RS23680 0.71 -0.4 4,881,413 - ABIE41_RS23680 0.89 -0.4 4,881,460 + -3.2 4,881,500 - -1.9 4,881,769 + ABIE41_RS23685 0.11 -1.5 4,882,201 + ABIE41_RS23685 0.67 -0.6 4,882,201 + ABIE41_RS23685 0.67 -0.0 4,882,201 + ABIE41_RS23685 0.67 -1.2 4,882,201 + ABIE41_RS23685 0.67 +0.5 4,882,202 - ABIE41_RS23685 0.67 +1.8 4,882,202 - ABIE41_RS23685 0.67 +0.4 4,882,202 - ABIE41_RS23685 0.67 -0.2 4,882,202 - ABIE41_RS23685 0.67 +1.6 4,882,474 - +1.6 4,882,474 - +1.6 4,882,474 - +1.1 4,882,656 + ABIE41_RS23690 0.24 -0.3 4,882,656 + ABIE41_RS23690 0.24 +0.4 4,882,656 + ABIE41_RS23690 0.24 +0.6 4,882,656 + ABIE41_RS23690 0.24 -1.8 4,882,656 + ABIE41_RS23690 0.24 -1.5 4,882,656 + ABIE41_RS23690 0.24 +2.0 4,882,656 + ABIE41_RS23690 0.24 +0.2 4,882,656 + ABIE41_RS23690 0.24 +0.2 4,882,657 - ABIE41_RS23690 0.24 +0.6 4,882,657 - ABIE41_RS23690 0.24 -0.1 4,882,657 - ABIE41_RS23690 0.24 -0.4 4,882,657 - ABIE41_RS23690 0.24 +0.6 4,882,765 - ABIE41_RS23690 0.38 +1.2 4,882,971 + ABIE41_RS23690 0.64 +1.4 4,882,972 - ABIE41_RS23690 0.65 -0.5 4,882,972 - ABIE41_RS23690 0.65 -0.4 4,882,972 - ABIE41_RS23690 0.65 +1.3 4,883,073 + ABIE41_RS23690 0.78 -0.4 4,883,091 + ABIE41_RS23690 0.80 -1.7 4,883,092 - ABIE41_RS23690 0.80 +1.0 4,883,143 - ABIE41_RS23690 0.87 -0.6 4,883,143 - ABIE41_RS23690 0.87 +1.0 4,883,389 + -1.1 4,883,389 + -2.5 4,883,389 + +0.3 4,883,390 - +0.4 4,883,390 - -2.5
Or see this region's nucleotide sequence