Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20450 and ABIE41_RS20455 are separated by 80 nucleotides ABIE41_RS20455 and ABIE41_RS20460 are separated by 139 nucleotides ABIE41_RS20460 and ABIE41_RS20465 are separated by 82 nucleotides
ABIE41_RS20450: ABIE41_RS20450 - haloacid dehalogenase type II, at 4,203,482 to 4,204,150
_RS20450
ABIE41_RS20455: ABIE41_RS20455 - Lrp/AsnC family transcriptional regulator, at 4,204,231 to 4,204,722
_RS20455
ABIE41_RS20460: ABIE41_RS20460 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 4,204,862 to 4,206,190
_RS20460
ABIE41_RS20465: ABIE41_RS20465 - phosphotransferase, at 4,206,273 to 4,207,301
_RS20465
Position (kb) 4204
4205
4206
4207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4203.900 kb on - strand, within ABIE41_RS20450 at 4203.923 kb on + strand, within ABIE41_RS20450 at 4203.924 kb on - strand, within ABIE41_RS20450 at 4203.924 kb on - strand, within ABIE41_RS20450 at 4203.950 kb on + strand, within ABIE41_RS20450 at 4203.950 kb on + strand, within ABIE41_RS20450 at 4203.951 kb on - strand, within ABIE41_RS20450 at 4204.013 kb on + strand, within ABIE41_RS20450 at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.095 kb on - strand at 4204.095 kb on - strand at 4204.394 kb on + strand, within ABIE41_RS20455 at 4204.395 kb on - strand, within ABIE41_RS20455 at 4204.395 kb on - strand, within ABIE41_RS20455 at 4204.418 kb on + strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.625 kb on - strand, within ABIE41_RS20455 at 4204.958 kb on - strand at 4205.135 kb on + strand, within ABIE41_RS20460 at 4205.135 kb on + strand, within ABIE41_RS20460 at 4205.136 kb on - strand, within ABIE41_RS20460 at 4205.136 kb on - strand, within ABIE41_RS20460 at 4205.136 kb on - strand, within ABIE41_RS20460 at 4205.582 kb on - strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.737 kb on - strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.904 kb on + strand, within ABIE41_RS20460 at 4206.007 kb on - strand, within ABIE41_RS20460 at 4206.027 kb on + strand, within ABIE41_RS20460 at 4206.073 kb on - strand at 4206.084 kb on + strand at 4206.198 kb on - strand at 4206.198 kb on - strand at 4206.208 kb on + strand at 4206.208 kb on + strand at 4206.209 kb on - strand at 4206.303 kb on + strand at 4206.304 kb on - strand at 4206.371 kb on + strand at 4206.371 kb on + strand at 4206.372 kb on - strand at 4206.373 kb on + strand at 4206.374 kb on - strand at 4206.409 kb on + strand, within ABIE41_RS20465 at 4206.499 kb on + strand, within ABIE41_RS20465
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 4,203,900 - ABIE41_RS20450 0.62 -1.7 4,203,923 + ABIE41_RS20450 0.66 -0.1 4,203,924 - ABIE41_RS20450 0.66 +0.3 4,203,924 - ABIE41_RS20450 0.66 -1.9 4,203,950 + ABIE41_RS20450 0.70 -0.3 4,203,950 + ABIE41_RS20450 0.70 +0.9 4,203,951 - ABIE41_RS20450 0.70 -0.2 4,204,013 + ABIE41_RS20450 0.79 -1.9 4,204,094 + -0.5 4,204,094 + +0.1 4,204,094 + +1.2 4,204,094 + +0.2 4,204,094 + +0.1 4,204,094 + -0.1 4,204,095 - +0.2 4,204,095 - -2.4 4,204,394 + ABIE41_RS20455 0.33 -0.6 4,204,395 - ABIE41_RS20455 0.33 +0.4 4,204,395 - ABIE41_RS20455 0.33 -1.5 4,204,418 + ABIE41_RS20455 0.38 +0.1 4,204,419 - ABIE41_RS20455 0.38 -2.2 4,204,419 - ABIE41_RS20455 0.38 -1.5 4,204,419 - ABIE41_RS20455 0.38 -1.1 4,204,419 - ABIE41_RS20455 0.38 -0.8 4,204,625 - ABIE41_RS20455 0.80 -0.6 4,204,958 - +0.2 4,205,135 + ABIE41_RS20460 0.21 -1.4 4,205,135 + ABIE41_RS20460 0.21 +0.1 4,205,136 - ABIE41_RS20460 0.21 -0.8 4,205,136 - ABIE41_RS20460 0.21 +0.6 4,205,136 - ABIE41_RS20460 0.21 +2.1 4,205,582 - ABIE41_RS20460 0.54 -0.6 4,205,736 + ABIE41_RS20460 0.66 -0.9 4,205,736 + ABIE41_RS20460 0.66 +0.0 4,205,736 + ABIE41_RS20460 0.66 -1.4 4,205,736 + ABIE41_RS20460 0.66 +0.5 4,205,737 - ABIE41_RS20460 0.66 +0.2 4,205,742 + ABIE41_RS20460 0.66 -0.9 4,205,742 + ABIE41_RS20460 0.66 -0.2 4,205,742 + ABIE41_RS20460 0.66 +0.8 4,205,742 + ABIE41_RS20460 0.66 -1.1 4,205,742 + ABIE41_RS20460 0.66 -1.4 4,205,742 + ABIE41_RS20460 0.66 -0.7 4,205,743 - ABIE41_RS20460 0.66 +0.1 4,205,743 - ABIE41_RS20460 0.66 +0.5 4,205,743 - ABIE41_RS20460 0.66 +1.8 4,205,743 - ABIE41_RS20460 0.66 +1.2 4,205,743 - ABIE41_RS20460 0.66 -0.7 4,205,743 - ABIE41_RS20460 0.66 -0.1 4,205,904 + ABIE41_RS20460 0.78 +1.0 4,206,007 - ABIE41_RS20460 0.86 -0.2 4,206,027 + ABIE41_RS20460 0.88 -0.9 4,206,073 - -1.8 4,206,084 + -1.5 4,206,198 - +1.1 4,206,198 - +0.3 4,206,208 + +1.9 4,206,208 + +0.1 4,206,209 - -0.3 4,206,303 + +0.6 4,206,304 - +0.7 4,206,371 + +0.5 4,206,371 + +0.1 4,206,372 - +0.7 4,206,373 + -1.8 4,206,374 - +0.2 4,206,409 + ABIE41_RS20465 0.13 +0.5 4,206,499 + ABIE41_RS20465 0.22 +0.0
Or see this region's nucleotide sequence