Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17725 and ABIE41_RS17730 are separated by 183 nucleotides ABIE41_RS17730 and ABIE41_RS17735 are separated by 25 nucleotides ABIE41_RS17735 and ABIE41_RS17740 are separated by 6 nucleotides
ABIE41_RS17725: ABIE41_RS17725 - LPS-assembly protein LptD, at 3,650,517 to 3,653,051
_RS17725
ABIE41_RS17730: ABIE41_RS17730 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 3,653,235 to 3,654,083
_RS17730
ABIE41_RS17735: ABIE41_RS17735 - guanylate kinase, at 3,654,109 to 3,654,753
_RS17735
ABIE41_RS17740: ABIE41_RS17740 - YicC/YloC family endoribonuclease, at 3,654,760 to 3,655,641
_RS17740
Position (kb)
3653
3654
3655 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3653.072 kb on + strand at 3653.512 kb on - strand, within ABIE41_RS17730 at 3653.610 kb on + strand, within ABIE41_RS17730 at 3653.610 kb on + strand, within ABIE41_RS17730 at 3654.962 kb on - strand, within ABIE41_RS17740 at 3654.962 kb on - strand, within ABIE41_RS17740 at 3654.962 kb on - strand, within ABIE41_RS17740
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 3,653,072 + +1.5 3,653,512 - ABIE41_RS17730 0.33 -1.4 3,653,610 + ABIE41_RS17730 0.44 +0.6 3,653,610 + ABIE41_RS17730 0.44 +1.1 3,654,962 - ABIE41_RS17740 0.23 -0.2 3,654,962 - ABIE41_RS17740 0.23 +0.8 3,654,962 - ABIE41_RS17740 0.23 -3.0
Or see this region's nucleotide sequence