Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17730

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17725 and ABIE41_RS17730 are separated by 183 nucleotidesABIE41_RS17730 and ABIE41_RS17735 are separated by 25 nucleotidesABIE41_RS17735 and ABIE41_RS17740 are separated by 6 nucleotides ABIE41_RS17725: ABIE41_RS17725 - LPS-assembly protein LptD, at 3,650,517 to 3,653,051 _RS17725 ABIE41_RS17730: ABIE41_RS17730 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 3,653,235 to 3,654,083 _RS17730 ABIE41_RS17735: ABIE41_RS17735 - guanylate kinase, at 3,654,109 to 3,654,753 _RS17735 ABIE41_RS17740: ABIE41_RS17740 - YicC/YloC family endoribonuclease, at 3,654,760 to 3,655,641 _RS17740 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -3 -2 -1 0 1at 3653.072 kb on + strandat 3653.512 kb on - strand, within ABIE41_RS17730at 3653.610 kb on + strand, within ABIE41_RS17730at 3653.610 kb on + strand, within ABIE41_RS17730at 3654.962 kb on - strand, within ABIE41_RS17740at 3654.962 kb on - strand, within ABIE41_RS17740at 3654.962 kb on - strand, within ABIE41_RS17740

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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3,653,072 + +1.5
3,653,512 - ABIE41_RS17730 0.33 -1.4
3,653,610 + ABIE41_RS17730 0.44 +0.6
3,653,610 + ABIE41_RS17730 0.44 +1.1
3,654,962 - ABIE41_RS17740 0.23 -0.2
3,654,962 - ABIE41_RS17740 0.23 +0.8
3,654,962 - ABIE41_RS17740 0.23 -3.0

Or see this region's nucleotide sequence