Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09740

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
2,012,708	+		ABIE41_RS09735	0.37	-0.5
2,012,708	+		ABIE41_RS09735	0.37	-0.3
2,012,708	+		ABIE41_RS09735	0.37	+0.8
2,012,708	+		ABIE41_RS09735	0.37	-0.9
2,012,709	-		ABIE41_RS09735	0.38	+0.8
2,012,709	-		ABIE41_RS09735	0.38	+0.0
2,012,709	-		ABIE41_RS09735	0.38	-0.3
2,012,756	+		ABIE41_RS09735	0.42	-0.9
2,012,756	+		ABIE41_RS09735	0.42	-1.2
2,012,756	+		ABIE41_RS09735	0.42	+0.7
2,012,757	-		ABIE41_RS09735	0.42	-0.6
2,012,757	-		ABIE41_RS09735	0.42	-0.4
2,012,757	-		ABIE41_RS09735	0.42	-0.4
2,012,757	-		ABIE41_RS09735	0.42	+0.2
2,012,757	-		ABIE41_RS09735	0.42	-0.4
2,012,790	-		ABIE41_RS09735	0.45	-0.1
2,012,891	+		ABIE41_RS09735	0.54	-0.1
2,012,891	+		ABIE41_RS09735	0.54	-0.4
2,012,891	+		ABIE41_RS09735	0.54	+0.4
2,012,891	+		ABIE41_RS09735	0.54	-1.9
2,012,891	+		ABIE41_RS09735	0.54	+0.3
2,012,891	+		ABIE41_RS09735	0.54	+0.2
2,012,892	-		ABIE41_RS09735	0.54	-1.9
2,012,897	+		ABIE41_RS09735	0.54	-1.8
2,012,897	+		ABIE41_RS09735	0.54	-0.9
2,013,009	-		ABIE41_RS09735	0.64	+0.1
2,013,035	+		ABIE41_RS09735	0.67	+0.6
2,013,035	+		ABIE41_RS09735	0.67	-2.4
2,013,050	+		ABIE41_RS09735	0.68	-0.3
2,013,050	+		ABIE41_RS09735	0.68	+0.1
2,013,050	+		ABIE41_RS09735	0.68	-0.1
2,013,050	+		ABIE41_RS09735	0.68	-0.1
2,013,050	+		ABIE41_RS09735	0.68	-0.4
2,013,051	-		ABIE41_RS09735	0.68	-0.5
2,013,051	-		ABIE41_RS09735	0.68	+0.6
2,013,051	-		ABIE41_RS09735	0.68	+0.9
2,013,438	+				-0.4
2,013,450	-				+1.1
2,013,450	-				+1.1
2,013,450	-				-0.6
2,013,507	+				+0.8
2,013,508	+				+0.7
2,013,508	+				+0.4
2,013,509	-				+1.9
2,013,509	-				+0.8
2,013,509	-				-0.1
2,013,509	-				+0.1
2,013,509	-				-0.9
2,013,509	-				-0.4
2,013,594	+				-0.1
2,013,595	-				+0.4
2,013,835	+		ABIE41_RS09740	0.13	-0.6
2,013,980	+		ABIE41_RS09740	0.23	-1.1
2,013,981	-		ABIE41_RS09740	0.23	+0.1
2,013,981	-		ABIE41_RS09740	0.23	+2.5
2,014,008	-		ABIE41_RS09740	0.24	-0.1
2,014,008	-		ABIE41_RS09740	0.24	-0.1
2,014,094	+		ABIE41_RS09740	0.30	-0.7
2,014,094	+		ABIE41_RS09740	0.30	+0.6
2,014,094	+		ABIE41_RS09740	0.30	+0.3
2,014,095	-		ABIE41_RS09740	0.31	-2.4
2,014,121	+		ABIE41_RS09740	0.32	-0.2
2,014,121	+		ABIE41_RS09740	0.32	-1.8
2,014,121	+		ABIE41_RS09740	0.32	+0.6
2,014,121	+		ABIE41_RS09740	0.32	+1.2
2,014,122	-		ABIE41_RS09740	0.32	-0.6
2,014,122	-		ABIE41_RS09740	0.32	+1.5
2,014,122	-		ABIE41_RS09740	0.32	+0.1
2,014,122	-		ABIE41_RS09740	0.32	-2.2
2,014,214	+		ABIE41_RS09740	0.39	+1.7
2,014,214	+		ABIE41_RS09740	0.39	+0.9
2,014,214	+		ABIE41_RS09740	0.39	-0.2
2,014,215	-		ABIE41_RS09740	0.39	+1.1
2,014,215	-		ABIE41_RS09740	0.39	-1.4
2,014,433	+		ABIE41_RS09740	0.54	-1.9
2,014,455	-		ABIE41_RS09740	0.55	+1.4
2,014,508	+		ABIE41_RS09740	0.59	+0.8
2,014,508	+		ABIE41_RS09740	0.59	+1.0
2,014,508	+		ABIE41_RS09740	0.59	-0.6
2,014,508	+		ABIE41_RS09740	0.59	-2.1
2,014,508	+		ABIE41_RS09740	0.59	+1.3
2,014,509	-		ABIE41_RS09740	0.59	+0.2
2,014,509	-		ABIE41_RS09740	0.59	+1.1
2,014,509	-		ABIE41_RS09740	0.59	+4.1
2,014,509	-		ABIE41_RS09740	0.59	-1.6
2,014,509	-		ABIE41_RS09740	0.59	+4.7
2,014,509	-		ABIE41_RS09740	0.59	+0.3
2,014,617	-		ABIE41_RS09740	0.67	-0.5
2,014,793	+		ABIE41_RS09740	0.79	-1.1
2,014,793	+		ABIE41_RS09740	0.79	-2.6
2,014,793	+		ABIE41_RS09740	0.79	-1.7
2,014,793	+		ABIE41_RS09740	0.79	-0.0
2,014,793	+		ABIE41_RS09740	0.79	-0.8
2,014,793	+		ABIE41_RS09740	0.79	-1.9
2,014,794	-		ABIE41_RS09740	0.79	-2.4
2,014,794	-		ABIE41_RS09740	0.79	-0.5
2,014,794	-		ABIE41_RS09740	0.79	-0.3
2,014,794	-		ABIE41_RS09740	0.79	-1.6
2,014,908	-		ABIE41_RS09740	0.87	-0.4
2,014,916	+		ABIE41_RS09740	0.87	+2.1
2,014,917	-		ABIE41_RS09740	0.87	-0.1
2,015,250	+				-1.1
2,015,250	+				+1.4
2,015,250	+				-2.7
2,015,250	+				-0.4
2,015,250	-				+1.1
2,015,251	-		ABIE41_RS09745	0.10	-0.6
2,015,251	-		ABIE41_RS09745	0.10	-0.7
2,015,251	-		ABIE41_RS09745	0.10	-0.1
2,015,251	-		ABIE41_RS09745	0.10	+0.1
2,015,251	-		ABIE41_RS09745	0.10	-0.1
2,015,251	-		ABIE41_RS09745	0.10	+0.4
2,015,446	-		ABIE41_RS09745	0.39	-1.1
2,015,446	-		ABIE41_RS09745	0.39	+2.2
2,015,574	+		ABIE41_RS09745	0.59	+1.1
2,015,575	-		ABIE41_RS09745	0.59	+0.7
2,015,622	+		ABIE41_RS09745	0.66	-0.2
2,015,622	+		ABIE41_RS09745	0.66	+1.2
2,015,622	+		ABIE41_RS09745	0.66	+1.4
2,015,622	+		ABIE41_RS09745	0.66	-2.5
2,015,622	+		ABIE41_RS09745	0.66	-3.1
2,015,623	-		ABIE41_RS09745	0.66	-0.6
2,015,623	-		ABIE41_RS09745	0.66	+0.7
2,015,623	-		ABIE41_RS09745	0.66	+1.7
2,015,625	-		ABIE41_RS09745	0.66	-2.4
2,015,807	+				-2.1
2,015,808	-				-0.6
2,015,840	+				-0.4
2,015,840	+				-2.4
2,015,840	+				-1.6
2,015,841	-				+0.5
2,016,001	+		ABIE41_RS09750	0.14	-0.5
2,016,001	+		ABIE41_RS09750	0.14	-0.0
2,016,002	-		ABIE41_RS09750	0.15	-1.1
2,016,002	-		ABIE41_RS09750	0.15	+0.5
2,016,002	-		ABIE41_RS09750	0.15	-0.1
2,016,071	+		ABIE41_RS09750	0.22	+0.2