Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05220

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05215 and ABIE41_RS05220 are separated by 112 nucleotidesABIE41_RS05220 and ABIE41_RS05225 are separated by 67 nucleotidesABIE41_RS05225 and ABIE41_RS05230 are separated by 126 nucleotidesABIE41_RS05230 and ABIE41_RS05235 are separated by 112 nucleotides ABIE41_RS05215: ABIE41_RS05215 - DSD1 family PLP-dependent enzyme, at 1,079,033 to 1,080,169 _RS05215 ABIE41_RS05220: ABIE41_RS05220 - ABC transporter ATP-binding protein, at 1,080,282 to 1,082,102 _RS05220 ABIE41_RS05225: ABIE41_RS05225 - phosphoribosyl-ATP diphosphatase, at 1,082,170 to 1,082,544 _RS05225 ABIE41_RS05230: ABIE41_RS05230 - tRNA-Arg, at 1,082,671 to 1,082,747 _RS05230 ABIE41_RS05235: ABIE41_RS05235 - LacI family DNA-binding transcriptional regulator, at 1,082,860 to 1,083,891 _RS05235 Position (kb) 1080 1081 1082 1083Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1079.415 kb on + strand, within ABIE41_RS05215at 1079.415 kb on + strand, within ABIE41_RS05215at 1079.415 kb on + strand, within ABIE41_RS05215at 1079.416 kb on - strand, within ABIE41_RS05215at 1079.416 kb on - strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.436 kb on + strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.437 kb on - strand, within ABIE41_RS05215at 1079.634 kb on + strand, within ABIE41_RS05215at 1079.634 kb on + strand, within ABIE41_RS05215at 1079.634 kb on + strand, within ABIE41_RS05215at 1079.635 kb on - strand, within ABIE41_RS05215at 1079.635 kb on - strand, within ABIE41_RS05215at 1079.635 kb on - strand, within ABIE41_RS05215at 1080.055 kb on + strand, within ABIE41_RS05215at 1080.055 kb on + strand, within ABIE41_RS05215at 1080.055 kb on + strand, within ABIE41_RS05215at 1080.055 kb on + strand, within ABIE41_RS05215at 1080.055 kb on + strand, within ABIE41_RS05215at 1080.269 kb on + strandat 1080.269 kb on + strandat 1080.308 kb on + strandat 1082.371 kb on + strand, within ABIE41_RS05225at 1082.371 kb on + strand, within ABIE41_RS05225at 1082.371 kb on + strand, within ABIE41_RS05225at 1082.372 kb on - strand, within ABIE41_RS05225at 1082.453 kb on - strand, within ABIE41_RS05225at 1082.453 kb on - strand, within ABIE41_RS05225at 1082.760 kb on - strandat 1082.760 kb on - strandat 1082.958 kb on + strandat 1082.958 kb on + strandat 1082.958 kb on + strandat 1082.959 kb on - strandat 1082.959 kb on - strandat 1082.978 kb on + strand, within ABIE41_RS05235at 1082.979 kb on - strand, within ABIE41_RS05235at 1083.095 kb on + strand, within ABIE41_RS05235

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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1,079,415 + ABIE41_RS05215 0.34 +0.5
1,079,415 + ABIE41_RS05215 0.34 +0.2
1,079,415 + ABIE41_RS05215 0.34 -2.1
1,079,416 - ABIE41_RS05215 0.34 +0.7
1,079,416 - ABIE41_RS05215 0.34 -1.0
1,079,436 + ABIE41_RS05215 0.35 +0.2
1,079,436 + ABIE41_RS05215 0.35 +1.2
1,079,436 + ABIE41_RS05215 0.35 -0.8
1,079,436 + ABIE41_RS05215 0.35 +1.1
1,079,436 + ABIE41_RS05215 0.35 +2.0
1,079,436 + ABIE41_RS05215 0.35 +0.4
1,079,436 + ABIE41_RS05215 0.35 -1.6
1,079,436 + ABIE41_RS05215 0.35 -2.1
1,079,436 + ABIE41_RS05215 0.35 +2.7
1,079,437 - ABIE41_RS05215 0.36 -0.7
1,079,437 - ABIE41_RS05215 0.36 +0.3
1,079,437 - ABIE41_RS05215 0.36 +0.1
1,079,437 - ABIE41_RS05215 0.36 -3.4
1,079,437 - ABIE41_RS05215 0.36 +0.5
1,079,437 - ABIE41_RS05215 0.36 +0.1
1,079,437 - ABIE41_RS05215 0.36 -1.3
1,079,437 - ABIE41_RS05215 0.36 -0.1
1,079,437 - ABIE41_RS05215 0.36 -1.3
1,079,437 - ABIE41_RS05215 0.36 -1.0
1,079,437 - ABIE41_RS05215 0.36 +0.7
1,079,634 + ABIE41_RS05215 0.53 -1.2
1,079,634 + ABIE41_RS05215 0.53 -0.5
1,079,634 + ABIE41_RS05215 0.53 +1.7
1,079,635 - ABIE41_RS05215 0.53 +1.3
1,079,635 - ABIE41_RS05215 0.53 +0.0
1,079,635 - ABIE41_RS05215 0.53 -3.2
1,080,055 + ABIE41_RS05215 0.90 +0.7
1,080,055 + ABIE41_RS05215 0.90 +0.8
1,080,055 + ABIE41_RS05215 0.90 +0.5
1,080,055 + ABIE41_RS05215 0.90 -0.8
1,080,055 + ABIE41_RS05215 0.90 -1.0
1,080,269 + +0.0
1,080,269 + -0.1
1,080,308 + +1.3
1,082,371 + ABIE41_RS05225 0.54 +1.0
1,082,371 + ABIE41_RS05225 0.54 -1.8
1,082,371 + ABIE41_RS05225 0.54 +0.0
1,082,372 - ABIE41_RS05225 0.54 -3.3
1,082,453 - ABIE41_RS05225 0.75 +2.0
1,082,453 - ABIE41_RS05225 0.75 -1.8
1,082,760 - +0.3
1,082,760 - +0.2
1,082,958 + +0.6
1,082,958 + -1.3
1,082,958 + +1.6
1,082,959 - -0.6
1,082,959 - -0.6
1,082,978 + ABIE41_RS05235 0.11 -0.8
1,082,979 - ABIE41_RS05235 0.12 -0.6
1,083,095 + ABIE41_RS05235 0.23 -1.4

Or see this region's nucleotide sequence