Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04150 and ABIE41_RS04155 are separated by 33 nucleotides ABIE41_RS04155 and ABIE41_RS04160 are separated by 120 nucleotides
ABIE41_RS04150: ABIE41_RS04150 - methyl-accepting chemotaxis protein, at 857,901 to 860,255
_RS04150
ABIE41_RS04155: ABIE41_RS04155 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 860,289 to 862,727
_RS04155
ABIE41_RS04160: ABIE41_RS04160 - DNA helicase RecQ, at 862,848 to 864,686
_RS04160
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -2
-1
0
1
2 at 859.414 kb on - strand, within ABIE41_RS04150 at 862.787 kb on - strand at 862.787 kb on - strand at 862.789 kb on - strand at 862.826 kb on + strand at 862.892 kb on - strand at 862.892 kb on - strand at 862.999 kb on + strand at 862.999 kb on + strand at 862.999 kb on + strand at 862.999 kb on + strand at 863.000 kb on - strand at 863.000 kb on - strand at 863.320 kb on - strand, within ABIE41_RS04160 at 863.533 kb on + strand, within ABIE41_RS04160 at 863.534 kb on - strand, within ABIE41_RS04160 at 863.534 kb on - strand, within ABIE41_RS04160 at 863.534 kb on - strand, within ABIE41_RS04160 at 863.680 kb on + strand, within ABIE41_RS04160
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 859,414 - ABIE41_RS04150 0.64 +1.3 862,787 - +1.0 862,787 - -2.2 862,789 - +0.6 862,826 + +2.7 862,892 - -1.3 862,892 - +0.1 862,999 + +2.0 862,999 + +1.0 862,999 + -1.2 862,999 + -2.2 863,000 - -0.3 863,000 - -0.6 863,320 - ABIE41_RS04160 0.26 +0.4 863,533 + ABIE41_RS04160 0.37 -0.7 863,534 - ABIE41_RS04160 0.37 -2.0 863,534 - ABIE41_RS04160 0.37 -0.1 863,534 - ABIE41_RS04160 0.37 -0.4 863,680 + ABIE41_RS04160 0.45 +0.3
Or see this region's nucleotide sequence