Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04085 and ABIE41_RS04090 are separated by 215 nucleotides ABIE41_RS04090 and ABIE41_RS04095 overlap by 14 nucleotides ABIE41_RS04095 and ABIE41_RS04100 overlap by 1 nucleotides ABIE41_RS04100 and ABIE41_RS04105 are separated by 18 nucleotides
ABIE41_RS04085: ABIE41_RS04085 - response regulator, at 844,323 to 845,123
_RS04085
ABIE41_RS04090: ABIE41_RS04090 - NepR family anti-sigma factor, at 845,339 to 845,563
_RS04090
ABIE41_RS04095: ABIE41_RS04095 - sigma-70 family RNA polymerase sigma factor, at 845,550 to 846,110
_RS04095
ABIE41_RS04100: ABIE41_RS04100 - sensor histidine kinase, at 846,110 to 847,756
_RS04100
ABIE41_RS04105: ABIE41_RS04105 - transglutaminase family protein, at 847,775 to 848,653
_RS04105
Position (kb) 846
847
848 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 845.138 kb on + strand at 845.139 kb on - strand at 845.173 kb on + strand at 845.173 kb on + strand at 845.320 kb on + strand at 845.725 kb on + strand, within ABIE41_RS04095 at 845.748 kb on + strand, within ABIE41_RS04095 at 845.748 kb on + strand, within ABIE41_RS04095 at 845.748 kb on + strand, within ABIE41_RS04095 at 845.748 kb on + strand, within ABIE41_RS04095 at 845.748 kb on + strand, within ABIE41_RS04095 at 845.748 kb on + strand, within ABIE41_RS04095 at 845.748 kb on + strand, within ABIE41_RS04095 at 845.751 kb on + strand, within ABIE41_RS04095 at 845.802 kb on + strand, within ABIE41_RS04095 at 845.934 kb on + strand, within ABIE41_RS04095 at 845.934 kb on + strand, within ABIE41_RS04095 at 845.935 kb on - strand, within ABIE41_RS04095 at 846.076 kb on + strand at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.107 kb on - strand, within ABIE41_RS04105 at 848.181 kb on + strand, within ABIE41_RS04105 at 848.313 kb on + strand, within ABIE41_RS04105 at 848.313 kb on + strand, within ABIE41_RS04105 at 848.314 kb on - strand, within ABIE41_RS04105 at 848.346 kb on + strand, within ABIE41_RS04105 at 848.346 kb on + strand, within ABIE41_RS04105 at 848.347 kb on - strand, within ABIE41_RS04105 at 848.347 kb on - strand, within ABIE41_RS04105 at 848.487 kb on + strand, within ABIE41_RS04105 at 848.488 kb on - strand, within ABIE41_RS04105 at 848.488 kb on - strand, within ABIE41_RS04105 at 848.488 kb on - strand, within ABIE41_RS04105 at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.623 kb on - strand at 848.623 kb on - strand at 848.623 kb on - strand at 848.623 kb on - strand at 848.649 kb on + strand at 848.649 kb on + strand at 848.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 845,138 + +0.5 845,139 - -1.9 845,173 + -0.5 845,173 + -0.7 845,320 + -4.1 845,725 + ABIE41_RS04095 0.31 -2.4 845,748 + ABIE41_RS04095 0.35 -1.2 845,748 + ABIE41_RS04095 0.35 +1.7 845,748 + ABIE41_RS04095 0.35 -0.4 845,748 + ABIE41_RS04095 0.35 +0.9 845,748 + ABIE41_RS04095 0.35 -1.6 845,748 + ABIE41_RS04095 0.35 -0.8 845,748 + ABIE41_RS04095 0.35 -1.0 845,751 + ABIE41_RS04095 0.36 -0.8 845,802 + ABIE41_RS04095 0.45 -1.3 845,934 + ABIE41_RS04095 0.68 -0.9 845,934 + ABIE41_RS04095 0.68 -0.3 845,935 - ABIE41_RS04095 0.69 +1.3 846,076 + -1.2 848,043 + ABIE41_RS04105 0.30 +0.0 848,043 + ABIE41_RS04105 0.30 +0.6 848,043 + ABIE41_RS04105 0.30 +0.1 848,043 + ABIE41_RS04105 0.30 -0.3 848,043 + ABIE41_RS04105 0.30 +1.0 848,106 + ABIE41_RS04105 0.38 +0.3 848,106 + ABIE41_RS04105 0.38 +2.6 848,106 + ABIE41_RS04105 0.38 -2.8 848,106 + ABIE41_RS04105 0.38 +2.3 848,106 + ABIE41_RS04105 0.38 +1.6 848,106 + ABIE41_RS04105 0.38 -2.9 848,106 + ABIE41_RS04105 0.38 +2.4 848,107 - ABIE41_RS04105 0.38 -0.8 848,181 + ABIE41_RS04105 0.46 -1.2 848,313 + ABIE41_RS04105 0.61 +1.4 848,313 + ABIE41_RS04105 0.61 +2.7 848,314 - ABIE41_RS04105 0.61 +0.7 848,346 + ABIE41_RS04105 0.65 -0.2 848,346 + ABIE41_RS04105 0.65 +1.7 848,347 - ABIE41_RS04105 0.65 +3.2 848,347 - ABIE41_RS04105 0.65 -0.1 848,487 + ABIE41_RS04105 0.81 -0.3 848,488 - ABIE41_RS04105 0.81 -2.0 848,488 - ABIE41_RS04105 0.81 +0.3 848,488 - ABIE41_RS04105 0.81 -0.0 848,622 + -0.6 848,622 + -0.3 848,622 + -0.1 848,622 + -0.5 848,622 + +1.3 848,622 + +0.9 848,622 + -0.1 848,622 + +0.8 848,623 - +0.4 848,623 - -0.3 848,623 - -0.6 848,623 - -2.0 848,649 + -2.8 848,649 + -1.8 848,650 - +1.5
Or see this region's nucleotide sequence