Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03160

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03155 and ABIE41_RS03160 are separated by 68 nucleotidesABIE41_RS03160 and ABIE41_RS03165 are separated by 178 nucleotides ABIE41_RS03155: ABIE41_RS03155 - YifB family Mg chelatase-like AAA ATPase, at 659,451 to 660,989 _RS03155 ABIE41_RS03160: ABIE41_RS03160 - TRAP transporter permease, at 661,058 to 663,223 _RS03160 ABIE41_RS03165: ABIE41_RS03165 - TAXI family TRAP transporter solute-binding subunit, at 663,402 to 664,382 _RS03165 Position (kb) 661 662 663 664Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 660.604 kb on + strand, within ABIE41_RS03155at 660.604 kb on + strand, within ABIE41_RS03155at 660.605 kb on - strand, within ABIE41_RS03155at 660.605 kb on - strand, within ABIE41_RS03155at 660.605 kb on - strand, within ABIE41_RS03155at 660.682 kb on + strand, within ABIE41_RS03155at 660.752 kb on - strand, within ABIE41_RS03155at 660.758 kb on + strand, within ABIE41_RS03155at 661.106 kb on + strandat 661.375 kb on + strand, within ABIE41_RS03160at 661.375 kb on + strand, within ABIE41_RS03160at 661.375 kb on + strand, within ABIE41_RS03160at 661.375 kb on + strand, within ABIE41_RS03160at 661.375 kb on + strand, within ABIE41_RS03160at 661.376 kb on - strand, within ABIE41_RS03160at 661.376 kb on - strand, within ABIE41_RS03160at 661.376 kb on - strand, within ABIE41_RS03160at 661.476 kb on + strand, within ABIE41_RS03160at 661.476 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.479 kb on + strand, within ABIE41_RS03160at 661.480 kb on - strand, within ABIE41_RS03160at 661.480 kb on - strand, within ABIE41_RS03160at 661.559 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.560 kb on + strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.561 kb on - strand, within ABIE41_RS03160at 661.806 kb on + strand, within ABIE41_RS03160at 662.067 kb on + strand, within ABIE41_RS03160at 662.067 kb on + strand, within ABIE41_RS03160at 662.068 kb on - strand, within ABIE41_RS03160at 662.068 kb on - strand, within ABIE41_RS03160at 662.068 kb on - strand, within ABIE41_RS03160at 662.268 kb on + strand, within ABIE41_RS03160at 662.269 kb on - strand, within ABIE41_RS03160at 662.382 kb on + strand, within ABIE41_RS03160at 662.382 kb on + strand, within ABIE41_RS03160at 662.382 kb on + strand, within ABIE41_RS03160at 662.383 kb on - strand, within ABIE41_RS03160at 662.383 kb on - strand, within ABIE41_RS03160at 662.383 kb on - strand, within ABIE41_RS03160at 662.383 kb on - strand, within ABIE41_RS03160at 662.509 kb on - strand, within ABIE41_RS03160at 662.601 kb on + strand, within ABIE41_RS03160at 662.601 kb on + strand, within ABIE41_RS03160at 662.601 kb on + strand, within ABIE41_RS03160at 662.602 kb on - strand, within ABIE41_RS03160at 662.602 kb on - strand, within ABIE41_RS03160at 662.602 kb on - strand, within ABIE41_RS03160at 662.602 kb on - strand, within ABIE41_RS03160at 662.631 kb on + strand, within ABIE41_RS03160at 662.631 kb on + strand, within ABIE41_RS03160at 662.631 kb on + strand, within ABIE41_RS03160at 662.632 kb on - strand, within ABIE41_RS03160at 662.632 kb on - strand, within ABIE41_RS03160at 662.632 kb on - strand, within ABIE41_RS03160at 662.652 kb on + strand, within ABIE41_RS03160at 662.652 kb on + strand, within ABIE41_RS03160at 662.652 kb on + strand, within ABIE41_RS03160at 662.653 kb on - strand, within ABIE41_RS03160at 662.653 kb on - strand, within ABIE41_RS03160at 662.653 kb on - strand, within ABIE41_RS03160at 662.653 kb on - strand, within ABIE41_RS03160at 662.653 kb on - strand, within ABIE41_RS03160at 662.653 kb on - strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.730 kb on + strand, within ABIE41_RS03160at 662.731 kb on - strand, within ABIE41_RS03160at 662.731 kb on - strand, within ABIE41_RS03160at 662.731 kb on - strand, within ABIE41_RS03160at 662.731 kb on - strand, within ABIE41_RS03160at 662.731 kb on - strand, within ABIE41_RS03160at 662.731 kb on - strand, within ABIE41_RS03160at 662.731 kb on - strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.886 kb on + strand, within ABIE41_RS03160at 662.887 kb on - strand, within ABIE41_RS03160at 662.887 kb on - strand, within ABIE41_RS03160at 662.887 kb on - strand, within ABIE41_RS03160at 662.887 kb on - strand, within ABIE41_RS03160at 662.887 kb on - strand, within ABIE41_RS03160at 662.928 kb on + strand, within ABIE41_RS03160at 662.928 kb on + strand, within ABIE41_RS03160at 662.929 kb on - strand, within ABIE41_RS03160at 662.929 kb on - strand, within ABIE41_RS03160at 662.929 kb on - strand, within ABIE41_RS03160at 662.929 kb on - strand, within ABIE41_RS03160at 662.967 kb on + strand, within ABIE41_RS03160at 663.084 kb on + strandat 663.084 kb on + strandat 663.084 kb on + strandat 663.085 kb on - strandat 663.087 kb on + strandat 663.087 kb on + strandat 663.087 kb on + strandat 663.088 kb on - strandat 663.088 kb on - strandat 663.088 kb on - strandat 663.402 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.403 kb on + strandat 663.404 kb on - strandat 663.404 kb on - strandat 663.404 kb on - strandat 663.404 kb on - strandat 663.404 kb on - strandat 663.427 kb on + strandat 663.428 kb on - strandat 663.569 kb on - strand, within ABIE41_RS03165at 663.649 kb on + strand, within ABIE41_RS03165at 663.649 kb on + strand, within ABIE41_RS03165at 663.649 kb on + strand, within ABIE41_RS03165at 663.649 kb on + strand, within ABIE41_RS03165at 663.649 kb on + strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.650 kb on - strand, within ABIE41_RS03165at 663.857 kb on - strand, within ABIE41_RS03165at 663.857 kb on - strand, within ABIE41_RS03165at 663.857 kb on - strand, within ABIE41_RS03165at 663.857 kb on - strand, within ABIE41_RS03165at 663.857 kb on - strand, within ABIE41_RS03165at 664.025 kb on - strand, within ABIE41_RS03165at 664.025 kb on - strand, within ABIE41_RS03165at 664.090 kb on + strand, within ABIE41_RS03165at 664.091 kb on - strand, within ABIE41_RS03165at 664.091 kb on - strand, within ABIE41_RS03165at 664.091 kb on - strand, within ABIE41_RS03165at 664.091 kb on - strand, within ABIE41_RS03165

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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660,604 + ABIE41_RS03155 0.75 -1.3
660,604 + ABIE41_RS03155 0.75 -0.4
660,605 - ABIE41_RS03155 0.75 +0.0
660,605 - ABIE41_RS03155 0.75 +0.9
660,605 - ABIE41_RS03155 0.75 +0.9
660,682 + ABIE41_RS03155 0.80 -0.3
660,752 - ABIE41_RS03155 0.85 +0.4
660,758 + ABIE41_RS03155 0.85 +0.5
661,106 + +1.7
661,375 + ABIE41_RS03160 0.15 -1.3
661,375 + ABIE41_RS03160 0.15 -0.7
661,375 + ABIE41_RS03160 0.15 +0.2
661,375 + ABIE41_RS03160 0.15 +0.0
661,375 + ABIE41_RS03160 0.15 +0.9
661,376 - ABIE41_RS03160 0.15 +0.5
661,376 - ABIE41_RS03160 0.15 -1.0
661,376 - ABIE41_RS03160 0.15 -0.1
661,476 + ABIE41_RS03160 0.19 -2.2
661,476 + ABIE41_RS03160 0.19 +0.6
661,479 + ABIE41_RS03160 0.19 -1.6
661,479 + ABIE41_RS03160 0.19 -1.7
661,479 + ABIE41_RS03160 0.19 -0.5
661,479 + ABIE41_RS03160 0.19 -0.8
661,479 + ABIE41_RS03160 0.19 +1.7
661,479 + ABIE41_RS03160 0.19 +0.6
661,479 + ABIE41_RS03160 0.19 +3.0
661,479 + ABIE41_RS03160 0.19 -0.5
661,479 + ABIE41_RS03160 0.19 -1.7
661,479 + ABIE41_RS03160 0.19 +2.2
661,480 - ABIE41_RS03160 0.19 -0.0
661,480 - ABIE41_RS03160 0.19 +1.1
661,559 + ABIE41_RS03160 0.23 -2.9
661,560 + ABIE41_RS03160 0.23 -1.6
661,560 + ABIE41_RS03160 0.23 -0.1
661,560 + ABIE41_RS03160 0.23 +0.1
661,560 + ABIE41_RS03160 0.23 +1.1
661,560 + ABIE41_RS03160 0.23 -1.5
661,560 + ABIE41_RS03160 0.23 -0.4
661,560 + ABIE41_RS03160 0.23 -3.0
661,560 + ABIE41_RS03160 0.23 +0.4
661,560 + ABIE41_RS03160 0.23 -1.0
661,561 - ABIE41_RS03160 0.23 +0.3
661,561 - ABIE41_RS03160 0.23 -0.9
661,561 - ABIE41_RS03160 0.23 +0.2
661,561 - ABIE41_RS03160 0.23 -1.3
661,561 - ABIE41_RS03160 0.23 -0.6
661,561 - ABIE41_RS03160 0.23 +0.3
661,561 - ABIE41_RS03160 0.23 -1.0
661,561 - ABIE41_RS03160 0.23 +0.7
661,561 - ABIE41_RS03160 0.23 +0.4
661,561 - ABIE41_RS03160 0.23 -0.3
661,806 + ABIE41_RS03160 0.35 +1.1
662,067 + ABIE41_RS03160 0.47 +0.3
662,067 + ABIE41_RS03160 0.47 +0.5
662,068 - ABIE41_RS03160 0.47 +0.0
662,068 - ABIE41_RS03160 0.47 +0.4
662,068 - ABIE41_RS03160 0.47 -0.8
662,268 + ABIE41_RS03160 0.56 +1.5
662,269 - ABIE41_RS03160 0.56 +2.4
662,382 + ABIE41_RS03160 0.61 +1.4
662,382 + ABIE41_RS03160 0.61 -1.5
662,382 + ABIE41_RS03160 0.61 +0.4
662,383 - ABIE41_RS03160 0.61 -3.4
662,383 - ABIE41_RS03160 0.61 +0.8
662,383 - ABIE41_RS03160 0.61 -1.2
662,383 - ABIE41_RS03160 0.61 +1.2
662,509 - ABIE41_RS03160 0.67 +1.0
662,601 + ABIE41_RS03160 0.71 -0.3
662,601 + ABIE41_RS03160 0.71 +1.0
662,601 + ABIE41_RS03160 0.71 +1.1
662,602 - ABIE41_RS03160 0.71 +1.8
662,602 - ABIE41_RS03160 0.71 -0.3
662,602 - ABIE41_RS03160 0.71 -1.8
662,602 - ABIE41_RS03160 0.71 +0.2
662,631 + ABIE41_RS03160 0.73 +0.1
662,631 + ABIE41_RS03160 0.73 +0.4
662,631 + ABIE41_RS03160 0.73 +0.4
662,632 - ABIE41_RS03160 0.73 -0.9
662,632 - ABIE41_RS03160 0.73 -1.6
662,632 - ABIE41_RS03160 0.73 -1.5
662,652 + ABIE41_RS03160 0.74 +1.5
662,652 + ABIE41_RS03160 0.74 -0.7
662,652 + ABIE41_RS03160 0.74 -2.2
662,653 - ABIE41_RS03160 0.74 -1.9
662,653 - ABIE41_RS03160 0.74 -1.0
662,653 - ABIE41_RS03160 0.74 +2.2
662,653 - ABIE41_RS03160 0.74 +0.0
662,653 - ABIE41_RS03160 0.74 -1.3
662,653 - ABIE41_RS03160 0.74 +0.5
662,730 + ABIE41_RS03160 0.77 -3.6
662,730 + ABIE41_RS03160 0.77 -0.3
662,730 + ABIE41_RS03160 0.77 -0.4
662,730 + ABIE41_RS03160 0.77 -0.4
662,730 + ABIE41_RS03160 0.77 -2.1
662,730 + ABIE41_RS03160 0.77 -0.3
662,730 + ABIE41_RS03160 0.77 +0.4
662,730 + ABIE41_RS03160 0.77 -1.7
662,730 + ABIE41_RS03160 0.77 -0.3
662,731 - ABIE41_RS03160 0.77 -0.0
662,731 - ABIE41_RS03160 0.77 -0.2
662,731 - ABIE41_RS03160 0.77 +0.2
662,731 - ABIE41_RS03160 0.77 +0.5
662,731 - ABIE41_RS03160 0.77 +0.1
662,731 - ABIE41_RS03160 0.77 -0.0
662,731 - ABIE41_RS03160 0.77 -0.0
662,886 + ABIE41_RS03160 0.84 -0.2
662,886 + ABIE41_RS03160 0.84 -3.7
662,886 + ABIE41_RS03160 0.84 +1.5
662,886 + ABIE41_RS03160 0.84 +0.4
662,886 + ABIE41_RS03160 0.84 -1.0
662,886 + ABIE41_RS03160 0.84 +1.3
662,886 + ABIE41_RS03160 0.84 -0.6
662,886 + ABIE41_RS03160 0.84 -1.7
662,886 + ABIE41_RS03160 0.84 -1.9
662,887 - ABIE41_RS03160 0.84 -1.4
662,887 - ABIE41_RS03160 0.84 -1.2
662,887 - ABIE41_RS03160 0.84 -0.8
662,887 - ABIE41_RS03160 0.84 -1.3
662,887 - ABIE41_RS03160 0.84 +0.8
662,928 + ABIE41_RS03160 0.86 +2.0
662,928 + ABIE41_RS03160 0.86 -0.1
662,929 - ABIE41_RS03160 0.86 +0.8
662,929 - ABIE41_RS03160 0.86 -0.0
662,929 - ABIE41_RS03160 0.86 -0.9
662,929 - ABIE41_RS03160 0.86 -0.2
662,967 + ABIE41_RS03160 0.88 -0.6
663,084 + +1.1
663,084 + -0.0
663,084 + -1.1
663,085 - +0.2
663,087 + +0.1
663,087 + -1.3
663,087 + -0.6
663,088 - +1.5
663,088 - +0.1
663,088 - +0.6
663,402 + +0.3
663,403 + -3.1
663,403 + -2.7
663,403 + +0.9
663,403 + -0.5
663,403 + +0.8
663,403 + -0.7
663,403 + -0.3
663,403 + -1.2
663,403 + -0.6
663,404 - +0.7
663,404 - +0.5
663,404 - +1.6
663,404 - -0.0
663,404 - +0.6
663,427 + +0.0
663,428 - +0.3
663,569 - ABIE41_RS03165 0.17 +0.4
663,649 + ABIE41_RS03165 0.25 -0.8
663,649 + ABIE41_RS03165 0.25 +0.5
663,649 + ABIE41_RS03165 0.25 -0.6
663,649 + ABIE41_RS03165 0.25 +0.2
663,649 + ABIE41_RS03165 0.25 +1.3
663,650 - ABIE41_RS03165 0.25 +1.4
663,650 - ABIE41_RS03165 0.25 -0.2
663,650 - ABIE41_RS03165 0.25 +0.5
663,650 - ABIE41_RS03165 0.25 +0.6
663,650 - ABIE41_RS03165 0.25 -2.1
663,650 - ABIE41_RS03165 0.25 -0.2
663,650 - ABIE41_RS03165 0.25 -1.1
663,650 - ABIE41_RS03165 0.25 -1.4
663,650 - ABIE41_RS03165 0.25 +0.4
663,650 - ABIE41_RS03165 0.25 +0.2
663,650 - ABIE41_RS03165 0.25 -3.4
663,650 - ABIE41_RS03165 0.25 -0.6
663,857 - ABIE41_RS03165 0.46 -1.2
663,857 - ABIE41_RS03165 0.46 +0.7
663,857 - ABIE41_RS03165 0.46 -0.1
663,857 - ABIE41_RS03165 0.46 +0.2
663,857 - ABIE41_RS03165 0.46 -0.3
664,025 - ABIE41_RS03165 0.64 -1.8
664,025 - ABIE41_RS03165 0.64 -1.2
664,090 + ABIE41_RS03165 0.70 +3.0
664,091 - ABIE41_RS03165 0.70 +1.1
664,091 - ABIE41_RS03165 0.70 +1.9
664,091 - ABIE41_RS03165 0.70 -0.4
664,091 - ABIE41_RS03165 0.70 +2.1

Or see this region's nucleotide sequence