Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01860

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01855 and ABIE41_RS01860 are separated by 443 nucleotidesABIE41_RS01860 and ABIE41_RS01865 overlap by 11 nucleotidesABIE41_RS01865 and ABIE41_RS01870 are separated by 97 nucleotides ABIE41_RS01855: ABIE41_RS01855 - caspase family protein, at 375,128 to 376,795 _RS01855 ABIE41_RS01860: ABIE41_RS01860 - ABC transporter ATP-binding protein, at 377,239 to 378,003 _RS01860 ABIE41_RS01865: ABIE41_RS01865 - ABC transporter ATP-binding protein, at 377,993 to 378,736 _RS01865 ABIE41_RS01870: ABIE41_RS01870 - ABC transporter substrate-binding protein, at 378,834 to 380,039 _RS01870 Position (kb) 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 376.413 kb on + strand, within ABIE41_RS01855at 376.413 kb on + strand, within ABIE41_RS01855at 376.413 kb on + strand, within ABIE41_RS01855at 376.413 kb on + strand, within ABIE41_RS01855at 376.414 kb on - strand, within ABIE41_RS01855at 376.414 kb on - strand, within ABIE41_RS01855at 376.414 kb on - strand, within ABIE41_RS01855at 376.414 kb on - strand, within ABIE41_RS01855at 376.414 kb on - strand, within ABIE41_RS01855at 376.414 kb on - strand, within ABIE41_RS01855at 376.449 kb on + strand, within ABIE41_RS01855at 376.449 kb on + strand, within ABIE41_RS01855at 376.449 kb on + strand, within ABIE41_RS01855at 376.449 kb on + strand, within ABIE41_RS01855at 376.450 kb on - strand, within ABIE41_RS01855at 376.450 kb on - strand, within ABIE41_RS01855at 376.452 kb on + strand, within ABIE41_RS01855at 376.452 kb on + strand, within ABIE41_RS01855at 376.452 kb on + strand, within ABIE41_RS01855at 376.452 kb on + strand, within ABIE41_RS01855at 376.452 kb on + strand, within ABIE41_RS01855at 376.452 kb on + strand, within ABIE41_RS01855at 376.453 kb on - strand, within ABIE41_RS01855at 376.453 kb on - strand, within ABIE41_RS01855at 376.453 kb on - strand, within ABIE41_RS01855at 376.534 kb on - strand, within ABIE41_RS01855at 376.626 kb on + strand, within ABIE41_RS01855at 376.798 kb on + strandat 376.798 kb on + strandat 376.798 kb on + strandat 376.799 kb on - strandat 376.799 kb on - strandat 377.012 kb on + strandat 377.012 kb on + strandat 377.012 kb on + strandat 377.012 kb on + strandat 377.012 kb on + strandat 377.013 kb on - strandat 377.013 kb on - strandat 377.013 kb on - strandat 377.013 kb on - strandat 377.013 kb on - strandat 377.013 kb on - strandat 377.013 kb on - strandat 377.044 kb on + strandat 377.044 kb on + strandat 377.044 kb on + strandat 377.044 kb on + strandat 377.045 kb on - strandat 377.045 kb on - strandat 377.045 kb on - strandat 377.045 kb on - strandat 377.046 kb on - strandat 377.095 kb on - strandat 377.182 kb on + strandat 377.182 kb on + strandat 377.182 kb on + strandat 377.183 kb on - strandat 377.183 kb on - strandat 377.183 kb on - strandat 377.183 kb on - strandat 377.183 kb on - strandat 377.395 kb on - strand, within ABIE41_RS01860at 377.432 kb on - strand, within ABIE41_RS01860at 377.630 kb on + strand, within ABIE41_RS01860at 377.631 kb on - strand, within ABIE41_RS01860at 377.631 kb on - strand, within ABIE41_RS01860at 377.692 kb on + strand, within ABIE41_RS01860at 377.692 kb on + strand, within ABIE41_RS01860at 377.693 kb on - strand, within ABIE41_RS01860at 377.693 kb on - strand, within ABIE41_RS01860at 377.693 kb on - strand, within ABIE41_RS01860at 377.932 kb on + strandat 377.933 kb on - strandat 377.933 kb on - strandat 377.933 kb on - strandat 377.971 kb on + strandat 377.971 kb on + strandat 377.971 kb on + strandat 377.971 kb on + strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.972 kb on - strandat 377.973 kb on + strandat 378.048 kb on + strandat 378.048 kb on + strandat 378.048 kb on + strandat 378.048 kb on + strandat 378.048 kb on + strandat 378.048 kb on + strandat 378.048 kb on + strandat 378.049 kb on - strandat 378.049 kb on - strandat 378.055 kb on - strandat 378.281 kb on + strand, within ABIE41_RS01865at 378.281 kb on + strand, within ABIE41_RS01865at 378.281 kb on + strand, within ABIE41_RS01865at 378.281 kb on + strand, within ABIE41_RS01865at 378.281 kb on + strand, within ABIE41_RS01865at 378.305 kb on + strand, within ABIE41_RS01865at 378.305 kb on + strand, within ABIE41_RS01865at 378.305 kb on + strand, within ABIE41_RS01865at 378.305 kb on + strand, within ABIE41_RS01865at 378.305 kb on + strand, within ABIE41_RS01865at 378.305 kb on + strand, within ABIE41_RS01865at 378.305 kb on + strand, within ABIE41_RS01865at 378.306 kb on - strand, within ABIE41_RS01865at 378.306 kb on - strand, within ABIE41_RS01865at 378.306 kb on - strand, within ABIE41_RS01865at 378.306 kb on - strand, within ABIE41_RS01865at 378.306 kb on - strand, within ABIE41_RS01865at 378.306 kb on - strand, within ABIE41_RS01865at 378.584 kb on + strand, within ABIE41_RS01865at 378.585 kb on - strand, within ABIE41_RS01865at 378.585 kb on - strand, within ABIE41_RS01865at 378.644 kb on + strand, within ABIE41_RS01865at 378.644 kb on + strand, within ABIE41_RS01865at 378.644 kb on + strand, within ABIE41_RS01865at 378.645 kb on + strand, within ABIE41_RS01865at 378.645 kb on - strand, within ABIE41_RS01865at 378.645 kb on - strand, within ABIE41_RS01865at 378.645 kb on - strand, within ABIE41_RS01865at 378.645 kb on - strand, within ABIE41_RS01865at 378.723 kb on - strandat 378.830 kb on + strandat 378.948 kb on + strandat 378.949 kb on - strandat 378.949 kb on - strandat 378.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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376,413 + ABIE41_RS01855 0.77 -1.0
376,413 + ABIE41_RS01855 0.77 +0.5
376,413 + ABIE41_RS01855 0.77 -1.1
376,413 + ABIE41_RS01855 0.77 -1.0
376,414 - ABIE41_RS01855 0.77 +1.6
376,414 - ABIE41_RS01855 0.77 +0.4
376,414 - ABIE41_RS01855 0.77 +1.0
376,414 - ABIE41_RS01855 0.77 -2.4
376,414 - ABIE41_RS01855 0.77 -0.0
376,414 - ABIE41_RS01855 0.77 -1.3
376,449 + ABIE41_RS01855 0.79 +1.6
376,449 + ABIE41_RS01855 0.79 +0.1
376,449 + ABIE41_RS01855 0.79 -0.8
376,449 + ABIE41_RS01855 0.79 +2.9
376,450 - ABIE41_RS01855 0.79 -1.2
376,450 - ABIE41_RS01855 0.79 +0.7
376,452 + ABIE41_RS01855 0.79 +0.6
376,452 + ABIE41_RS01855 0.79 -1.5
376,452 + ABIE41_RS01855 0.79 +0.9
376,452 + ABIE41_RS01855 0.79 -2.2
376,452 + ABIE41_RS01855 0.79 -0.0
376,452 + ABIE41_RS01855 0.79 +3.3
376,453 - ABIE41_RS01855 0.79 +1.3
376,453 - ABIE41_RS01855 0.79 +0.5
376,453 - ABIE41_RS01855 0.79 +0.3
376,534 - ABIE41_RS01855 0.84 +0.6
376,626 + ABIE41_RS01855 0.90 +0.2
376,798 + -2.6
376,798 + -0.6
376,798 + -0.2
376,799 - +0.1
376,799 - +0.9
377,012 + -0.1
377,012 + +0.5
377,012 + -0.6
377,012 + -1.2
377,012 + -0.4
377,013 - -0.1
377,013 - -1.2
377,013 - -0.0
377,013 - -1.2
377,013 - +0.9
377,013 - +1.4
377,013 - +0.9
377,044 + +0.8
377,044 + +0.2
377,044 + +0.2
377,044 + -1.2
377,045 - -2.7
377,045 - -1.3
377,045 - -1.5
377,045 - -0.7
377,046 - -0.9
377,095 - -0.9
377,182 + -1.3
377,182 + +0.7
377,182 + +0.6
377,183 - -0.9
377,183 - +0.2
377,183 - -0.3
377,183 - -0.4
377,183 - -0.0
377,395 - ABIE41_RS01860 0.20 -0.8
377,432 - ABIE41_RS01860 0.25 +0.1
377,630 + ABIE41_RS01860 0.51 +0.9
377,631 - ABIE41_RS01860 0.51 -0.6
377,631 - ABIE41_RS01860 0.51 -0.5
377,692 + ABIE41_RS01860 0.59 +1.2
377,692 + ABIE41_RS01860 0.59 +1.0
377,693 - ABIE41_RS01860 0.59 +5.0
377,693 - ABIE41_RS01860 0.59 -1.3
377,693 - ABIE41_RS01860 0.59 -2.8
377,932 + -0.4
377,933 - +0.1
377,933 - -2.1
377,933 - -0.6
377,971 + +0.7
377,971 + +0.0
377,971 + -0.8
377,971 + -0.6
377,972 - +0.5
377,972 - -0.0
377,972 - -0.1
377,972 - -0.7
377,972 - +0.7
377,972 - +0.5
377,972 - -0.0
377,972 - +1.0
377,972 - -0.0
377,972 - -0.6
377,972 - -1.0
377,972 - -0.8
377,972 - -2.6
377,973 + +0.6
378,048 + +0.4
378,048 + -1.7
378,048 + +1.3
378,048 + -2.3
378,048 + -1.5
378,048 + +0.6
378,048 + +0.4
378,049 - -1.5
378,049 - -1.2
378,055 - +0.0
378,281 + ABIE41_RS01865 0.39 +0.3
378,281 + ABIE41_RS01865 0.39 -0.3
378,281 + ABIE41_RS01865 0.39 -0.7
378,281 + ABIE41_RS01865 0.39 +0.1
378,281 + ABIE41_RS01865 0.39 +0.5
378,305 + ABIE41_RS01865 0.42 +0.6
378,305 + ABIE41_RS01865 0.42 -1.8
378,305 + ABIE41_RS01865 0.42 -0.1
378,305 + ABIE41_RS01865 0.42 -0.4
378,305 + ABIE41_RS01865 0.42 -2.0
378,305 + ABIE41_RS01865 0.42 +0.4
378,305 + ABIE41_RS01865 0.42 -0.1
378,306 - ABIE41_RS01865 0.42 -0.6
378,306 - ABIE41_RS01865 0.42 -0.7
378,306 - ABIE41_RS01865 0.42 -2.6
378,306 - ABIE41_RS01865 0.42 +2.0
378,306 - ABIE41_RS01865 0.42 -0.2
378,306 - ABIE41_RS01865 0.42 -0.2
378,584 + ABIE41_RS01865 0.79 -0.0
378,585 - ABIE41_RS01865 0.80 -0.3
378,585 - ABIE41_RS01865 0.80 -2.5
378,644 + ABIE41_RS01865 0.88 -1.3
378,644 + ABIE41_RS01865 0.88 -3.5
378,644 + ABIE41_RS01865 0.88 -0.4
378,645 + ABIE41_RS01865 0.88 -2.7
378,645 - ABIE41_RS01865 0.88 -0.3
378,645 - ABIE41_RS01865 0.88 -2.7
378,645 - ABIE41_RS01865 0.88 +0.4
378,645 - ABIE41_RS01865 0.88 +0.4
378,723 - -0.1
378,830 + +0.4
378,948 + +0.5
378,949 - +1.6
378,949 - -1.0
378,949 - -1.2

Or see this region's nucleotide sequence