Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01625 and ABIE41_RS01630 are separated by 8 nucleotides ABIE41_RS01630 and ABIE41_RS01635 are separated by 109 nucleotides ABIE41_RS01635 and ABIE41_RS01640 are separated by 127 nucleotides
ABIE41_RS01625: ABIE41_RS01625 - allantoinase AllB, at 326,714 to 328,168
_RS01625
ABIE41_RS01630: ABIE41_RS01630 - SDR family NAD(P)-dependent oxidoreductase, at 328,177 to 328,971
_RS01630
ABIE41_RS01635: ABIE41_RS01635 - ABC transporter substrate-binding protein, at 329,081 to 330,133
_RS01635
ABIE41_RS01640: ABIE41_RS01640 - LysR substrate-binding domain-containing protein, at 330,261 to 331,184
_RS01640
Position (kb) 329
330
331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.294 kb on + strand, within ABIE41_RS01630 at 328.295 kb on - strand, within ABIE41_RS01630 at 328.496 kb on + strand, within ABIE41_RS01630 at 328.497 kb on - strand, within ABIE41_RS01630 at 328.999 kb on + strand at 329.457 kb on + strand, within ABIE41_RS01635 at 329.785 kb on - strand, within ABIE41_RS01635 at 329.785 kb on - strand, within ABIE41_RS01635 at 329.877 kb on + strand, within ABIE41_RS01635 at 329.877 kb on + strand, within ABIE41_RS01635 at 329.878 kb on - strand, within ABIE41_RS01635 at 329.878 kb on - strand, within ABIE41_RS01635 at 329.934 kb on + strand, within ABIE41_RS01635 at 329.961 kb on + strand, within ABIE41_RS01635 at 329.961 kb on + strand, within ABIE41_RS01635 at 329.961 kb on + strand, within ABIE41_RS01635 at 330.006 kb on + strand, within ABIE41_RS01635 at 330.180 kb on + strand at 330.285 kb on + strand at 330.285 kb on + strand at 330.285 kb on + strand at 330.285 kb on + strand at 330.285 kb on + strand at 330.286 kb on - strand at 330.286 kb on - strand at 330.286 kb on - strand at 330.286 kb on - strand at 330.286 kb on - strand at 330.286 kb on - strand at 330.286 kb on - strand at 330.286 kb on - strand at 330.288 kb on - strand at 330.678 kb on + strand, within ABIE41_RS01640 at 330.678 kb on + strand, within ABIE41_RS01640 at 330.829 kb on - strand, within ABIE41_RS01640 at 330.854 kb on + strand, within ABIE41_RS01640 at 330.855 kb on + strand, within ABIE41_RS01640 at 330.855 kb on + strand, within ABIE41_RS01640 at 330.856 kb on - strand, within ABIE41_RS01640 at 330.856 kb on - strand, within ABIE41_RS01640 at 330.856 kb on - strand, within ABIE41_RS01640 at 330.856 kb on - strand, within ABIE41_RS01640 at 330.856 kb on - strand, within ABIE41_RS01640 at 330.856 kb on - strand, within ABIE41_RS01640 at 330.856 kb on - strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 328,294 + ABIE41_RS01630 0.15 -1.3 328,295 - ABIE41_RS01630 0.15 +1.2 328,496 + ABIE41_RS01630 0.40 -0.9 328,497 - ABIE41_RS01630 0.40 -0.8 328,999 + -0.6 329,457 + ABIE41_RS01635 0.36 -0.1 329,785 - ABIE41_RS01635 0.67 -0.5 329,785 - ABIE41_RS01635 0.67 -2.7 329,877 + ABIE41_RS01635 0.76 -1.2 329,877 + ABIE41_RS01635 0.76 +0.1 329,878 - ABIE41_RS01635 0.76 +1.2 329,878 - ABIE41_RS01635 0.76 +0.3 329,934 + ABIE41_RS01635 0.81 +1.4 329,961 + ABIE41_RS01635 0.84 +1.3 329,961 + ABIE41_RS01635 0.84 -0.0 329,961 + ABIE41_RS01635 0.84 +0.6 330,006 + ABIE41_RS01635 0.88 -1.4 330,180 + -0.4 330,285 + -0.7 330,285 + +1.0 330,285 + -0.9 330,285 + +0.5 330,285 + +1.9 330,286 - +0.3 330,286 - -1.6 330,286 - -1.8 330,286 - -2.4 330,286 - +0.8 330,286 - -0.6 330,286 - +0.2 330,286 - +0.0 330,288 - -1.8 330,678 + ABIE41_RS01640 0.45 -0.4 330,678 + ABIE41_RS01640 0.45 +0.8 330,829 - ABIE41_RS01640 0.61 -0.8 330,854 + ABIE41_RS01640 0.64 +0.9 330,855 + ABIE41_RS01640 0.64 -1.3 330,855 + ABIE41_RS01640 0.64 +0.7 330,856 - ABIE41_RS01640 0.64 +0.1 330,856 - ABIE41_RS01640 0.64 -1.4 330,856 - ABIE41_RS01640 0.64 +0.0 330,856 - ABIE41_RS01640 0.64 -0.7 330,856 - ABIE41_RS01640 0.64 -0.1 330,856 - ABIE41_RS01640 0.64 +0.3 330,856 - ABIE41_RS01640 0.64 +0.6 330,951 + ABIE41_RS01640 0.75 -0.6 330,951 + ABIE41_RS01640 0.75 +0.5 330,951 + ABIE41_RS01640 0.75 -1.7 330,951 + ABIE41_RS01640 0.75 -0.4 330,951 + ABIE41_RS01640 0.75 +0.3 330,951 + ABIE41_RS01640 0.75 -0.9 330,951 + ABIE41_RS01640 0.75 -0.1 330,951 + ABIE41_RS01640 0.75 -0.1 330,951 + ABIE41_RS01640 0.75 -1.0 330,951 + ABIE41_RS01640 0.75 +1.0 330,952 - ABIE41_RS01640 0.75 +0.2 330,952 - ABIE41_RS01640 0.75 -0.9 330,952 - ABIE41_RS01640 0.75 -2.6 330,952 - ABIE41_RS01640 0.75 +1.5 330,952 - ABIE41_RS01640 0.75 -0.3 330,952 - ABIE41_RS01640 0.75 -2.6 330,952 - ABIE41_RS01640 0.75 -0.5 330,952 - ABIE41_RS01640 0.75 +0.4
Or see this region's nucleotide sequence