Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01335 and ABIE41_RS01340 overlap by 4 nucleotides ABIE41_RS01340 and ABIE41_RS01345 are separated by 32 nucleotides ABIE41_RS01345 and ABIE41_RS01350 are separated by 184 nucleotides ABIE41_RS01350 and ABIE41_RS01355 are separated by 22 nucleotides
ABIE41_RS01335: ABIE41_RS01335 - cell division topological specificity factor MinE, at 265,626 to 265,889
_RS01335
ABIE41_RS01340: ABIE41_RS01340 - septum site-determining protein MinD, at 265,886 to 266,701
_RS01340
ABIE41_RS01345: ABIE41_RS01345 - septum site-determining protein MinC, at 266,734 to 267,468
_RS01345
ABIE41_RS01350: ABIE41_RS01350 - hypothetical protein, at 267,653 to 267,892
_RS01350
ABIE41_RS01355: ABIE41_RS01355 - aldolase/citrate lyase family protein, at 267,915 to 268,712
_RS01355
Position (kb) 266
267
268 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 265.990 kb on - strand, within ABIE41_RS01340 at 266.161 kb on - strand, within ABIE41_RS01340 at 266.161 kb on - strand, within ABIE41_RS01340 at 266.188 kb on + strand, within ABIE41_RS01340 at 266.188 kb on + strand, within ABIE41_RS01340 at 266.451 kb on + strand, within ABIE41_RS01340 at 266.451 kb on + strand, within ABIE41_RS01340 at 266.451 kb on + strand, within ABIE41_RS01340 at 266.452 kb on - strand, within ABIE41_RS01340 at 266.452 kb on - strand, within ABIE41_RS01340 at 266.452 kb on - strand, within ABIE41_RS01340 at 266.452 kb on - strand, within ABIE41_RS01340 at 266.452 kb on - strand, within ABIE41_RS01340 at 266.452 kb on - strand, within ABIE41_RS01340 at 266.529 kb on + strand, within ABIE41_RS01340 at 266.529 kb on + strand, within ABIE41_RS01340 at 266.529 kb on + strand, within ABIE41_RS01340 at 266.530 kb on - strand, within ABIE41_RS01340 at 266.530 kb on - strand, within ABIE41_RS01340 at 266.701 kb on + strand at 266.701 kb on + strand at 266.701 kb on + strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.717 kb on - strand at 266.828 kb on + strand, within ABIE41_RS01345 at 266.828 kb on + strand, within ABIE41_RS01345 at 266.828 kb on + strand, within ABIE41_RS01345 at 266.829 kb on - strand, within ABIE41_RS01345 at 266.829 kb on - strand, within ABIE41_RS01345 at 266.829 kb on - strand, within ABIE41_RS01345 at 266.933 kb on + strand, within ABIE41_RS01345 at 266.933 kb on + strand, within ABIE41_RS01345 at 267.416 kb on + strand at 267.417 kb on - strand at 267.417 kb on - strand at 267.417 kb on - strand at 267.521 kb on + strand at 267.522 kb on - strand at 267.522 kb on - strand at 267.891 kb on - strand at 268.138 kb on + strand, within ABIE41_RS01355
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 265,990 - ABIE41_RS01340 0.13 +0.8 266,161 - ABIE41_RS01340 0.34 +0.4 266,161 - ABIE41_RS01340 0.34 -0.1 266,188 + ABIE41_RS01340 0.37 -0.6 266,188 + ABIE41_RS01340 0.37 -0.1 266,451 + ABIE41_RS01340 0.69 +1.1 266,451 + ABIE41_RS01340 0.69 -0.0 266,451 + ABIE41_RS01340 0.69 +0.4 266,452 - ABIE41_RS01340 0.69 -0.3 266,452 - ABIE41_RS01340 0.69 +1.6 266,452 - ABIE41_RS01340 0.69 -3.6 266,452 - ABIE41_RS01340 0.69 -2.9 266,452 - ABIE41_RS01340 0.69 -1.0 266,452 - ABIE41_RS01340 0.69 +0.1 266,529 + ABIE41_RS01340 0.79 -0.8 266,529 + ABIE41_RS01340 0.79 +0.3 266,529 + ABIE41_RS01340 0.79 +1.2 266,530 - ABIE41_RS01340 0.79 +0.7 266,530 - ABIE41_RS01340 0.79 -0.0 266,701 + +0.2 266,701 + -4.0 266,701 + +0.2 266,702 - +0.0 266,702 - -0.1 266,702 - -1.9 266,702 - +0.4 266,717 - -1.5 266,828 + ABIE41_RS01345 0.13 -2.1 266,828 + ABIE41_RS01345 0.13 +0.7 266,828 + ABIE41_RS01345 0.13 -2.4 266,829 - ABIE41_RS01345 0.13 +1.2 266,829 - ABIE41_RS01345 0.13 -0.2 266,829 - ABIE41_RS01345 0.13 +1.1 266,933 + ABIE41_RS01345 0.27 +0.1 266,933 + ABIE41_RS01345 0.27 +0.3 267,416 + -0.1 267,417 - -1.9 267,417 - +0.6 267,417 - -0.2 267,521 + -0.7 267,522 - +0.7 267,522 - +1.5 267,891 - -0.0 268,138 + ABIE41_RS01355 0.28 -0.7
Or see this region's nucleotide sequence