Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22545 and ABID97_RS22550 are separated by 12 nucleotides ABID97_RS22550 and ABID97_RS22555 overlap by 4 nucleotides ABID97_RS22555 and ABID97_RS22560 overlap by 4 nucleotides
ABID97_RS22545: ABID97_RS22545 - urea ABC transporter ATP-binding subunit UrtE, at 4,668,932 to 4,669,624
_RS22545
ABID97_RS22550: ABID97_RS22550 - urea ABC transporter ATP-binding protein UrtD, at 4,669,637 to 4,670,515
_RS22550
ABID97_RS22555: ABID97_RS22555 - urea ABC transporter permease subunit UrtC, at 4,670,512 to 4,671,732
_RS22555
ABID97_RS22560: ABID97_RS22560 - urea ABC transporter permease subunit UrtB, at 4,671,729 to 4,673,276
_RS22560
Position (kb) 4670
4671
4672 Strain fitness (log2 ratio) -1
0
1 at 4670.729 kb on + strand, within ABID97_RS22555 at 4670.897 kb on + strand, within ABID97_RS22555 at 4670.898 kb on - strand, within ABID97_RS22555 at 4671.243 kb on - strand, within ABID97_RS22555 at 4671.446 kb on + strand, within ABID97_RS22555 at 4671.447 kb on - strand, within ABID97_RS22555 at 4671.552 kb on - strand, within ABID97_RS22555 at 4671.719 kb on - strand at 4672.036 kb on + strand, within ABID97_RS22560 at 4672.459 kb on + strand, within ABID97_RS22560 at 4672.459 kb on + strand, within ABID97_RS22560 at 4672.486 kb on + strand, within ABID97_RS22560 at 4672.487 kb on - strand, within ABID97_RS22560 at 4672.552 kb on + strand, within ABID97_RS22560
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 4,670,729 + ABID97_RS22555 0.18 -0.5 4,670,897 + ABID97_RS22555 0.32 -0.1 4,670,898 - ABID97_RS22555 0.32 -0.6 4,671,243 - ABID97_RS22555 0.60 -0.4 4,671,446 + ABID97_RS22555 0.76 -0.4 4,671,447 - ABID97_RS22555 0.77 -1.4 4,671,552 - ABID97_RS22555 0.85 -0.3 4,671,719 - +0.2 4,672,036 + ABID97_RS22560 0.20 -0.5 4,672,459 + ABID97_RS22560 0.47 +0.1 4,672,459 + ABID97_RS22560 0.47 -1.3 4,672,486 + ABID97_RS22560 0.49 -0.0 4,672,487 - ABID97_RS22560 0.49 -0.1 4,672,552 + ABID97_RS22560 0.53 -0.4
Or see this region's nucleotide sequence