Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20050

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20040 and ABID97_RS20045 are separated by 35 nucleotidesABID97_RS20045 and ABID97_RS20050 are separated by 49 nucleotidesABID97_RS20050 and ABID97_RS20055 are separated by 26 nucleotidesABID97_RS20055 and ABID97_RS20060 are separated by 254 nucleotides ABID97_RS20040: ABID97_RS20040 - amino acid ABC transporter ATP-binding protein, at 4,142,505 to 4,143,260 _RS20040 ABID97_RS20045: ABID97_RS20045 - transporter substrate-binding domain-containing protein, at 4,143,296 to 4,144,093 _RS20045 ABID97_RS20050: ABID97_RS20050 - amino acid ABC transporter permease, at 4,144,143 to 4,144,796 _RS20050 ABID97_RS20055: ABID97_RS20055 - amino acid ABC transporter permease, at 4,144,823 to 4,145,494 _RS20055 ABID97_RS20060: ABID97_RS20060 - hypothetical protein, at 4,145,749 to 4,147,353 _RS20060 Position (kb) 4144 4145Strain fitness (log2 ratio) -1 0 1at 4144.140 kb on + strandat 4144.352 kb on - strand, within ABID97_RS20050at 4144.857 kb on + strandat 4144.903 kb on - strand, within ABID97_RS20055at 4144.924 kb on - strand, within ABID97_RS20055at 4144.924 kb on - strand, within ABID97_RS20055at 4145.053 kb on - strand, within ABID97_RS20055at 4145.317 kb on - strand, within ABID97_RS20055at 4145.317 kb on - strand, within ABID97_RS20055at 4145.488 kb on - strandat 4145.579 kb on + strandat 4145.592 kb on - strandat 4145.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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4,144,140 + -0.6
4,144,352 - ABID97_RS20050 0.32 -0.8
4,144,857 + -1.7
4,144,903 - ABID97_RS20055 0.12 -0.4
4,144,924 - ABID97_RS20055 0.15 -1.0
4,144,924 - ABID97_RS20055 0.15 -1.3
4,145,053 - ABID97_RS20055 0.34 -1.1
4,145,317 - ABID97_RS20055 0.74 +0.1
4,145,317 - ABID97_RS20055 0.74 -0.9
4,145,488 - -0.7
4,145,579 + -1.3
4,145,592 - -0.6
4,145,620 + +0.5

Or see this region's nucleotide sequence