Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10415

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10410 and ABID97_RS10415 are separated by 13 nucleotidesABID97_RS10415 and ABID97_RS10420 overlap by 4 nucleotides ABID97_RS10410: ABID97_RS10410 - ABC transporter permease, at 2,163,063 to 2,164,181 _RS10410 ABID97_RS10415: ABID97_RS10415 - ABC transporter permease, at 2,164,195 to 2,165,334 _RS10415 ABID97_RS10420: ABID97_RS10420 - ATP-binding cassette domain-containing protein, at 2,165,331 to 2,167,130 _RS10420 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -1 0 1at 2163.310 kb on + strand, within ABID97_RS10410at 2164.045 kb on + strand, within ABID97_RS10410at 2164.046 kb on - strand, within ABID97_RS10410at 2164.334 kb on + strand, within ABID97_RS10415at 2164.518 kb on - strand, within ABID97_RS10415at 2164.518 kb on - strand, within ABID97_RS10415at 2164.651 kb on + strand, within ABID97_RS10415at 2164.651 kb on + strand, within ABID97_RS10415at 2164.652 kb on - strand, within ABID97_RS10415at 2165.882 kb on - strand, within ABID97_RS10420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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2,163,310 + ABID97_RS10410 0.22 +0.7
2,164,045 + ABID97_RS10410 0.88 -0.7
2,164,046 - ABID97_RS10410 0.88 -0.2
2,164,334 + ABID97_RS10415 0.12 -0.2
2,164,518 - ABID97_RS10415 0.28 -0.9
2,164,518 - ABID97_RS10415 0.28 -0.2
2,164,651 + ABID97_RS10415 0.40 -0.5
2,164,651 + ABID97_RS10415 0.40 -0.3
2,164,652 - ABID97_RS10415 0.40 +0.2
2,165,882 - ABID97_RS10420 0.31 +0.8

Or see this region's nucleotide sequence