Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04425

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04415 and ABID97_RS04420 are separated by 24 nucleotidesABID97_RS04420 and ABID97_RS04425 are separated by 169 nucleotidesABID97_RS04425 and ABID97_RS04430 are separated by 352 nucleotides ABID97_RS04415: ABID97_RS04415 - tRNA 2-thiouridine(34) synthase MnmA, at 914,125 to 915,231 _RS04415 ABID97_RS04420: ABID97_RS04420 - NUDIX hydrolase, at 915,256 to 915,738 _RS04420 ABID97_RS04425: ABID97_RS04425 - response regulator transcription factor, at 915,908 to 916,603 _RS04425 ABID97_RS04430: ABID97_RS04430 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 916,956 to 918,086 _RS04430 Position (kb) 915 916 917Strain fitness (log2 ratio) -3 -2 -1 0 1at 915.470 kb on + strand, within ABID97_RS04420at 915.470 kb on + strand, within ABID97_RS04420at 915.470 kb on + strand, within ABID97_RS04420at 915.470 kb on + strand, within ABID97_RS04420at 915.471 kb on - strand, within ABID97_RS04420at 915.471 kb on - strand, within ABID97_RS04420at 915.471 kb on - strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.521 kb on + strand, within ABID97_RS04420at 915.522 kb on - strand, within ABID97_RS04420at 915.522 kb on - strand, within ABID97_RS04420at 915.522 kb on - strand, within ABID97_RS04420at 915.522 kb on - strand, within ABID97_RS04420at 915.522 kb on - strand, within ABID97_RS04420at 915.892 kb on + strandat 915.892 kb on + strandat 915.893 kb on - strandat 915.909 kb on + strandat 915.910 kb on - strandat 915.910 kb on - strandat 915.910 kb on - strandat 915.911 kb on + strandat 915.911 kb on + strandat 915.912 kb on - strandat 915.912 kb on - strandat 915.912 kb on - strandat 915.912 kb on - strandat 915.912 kb on - strandat 915.919 kb on - strandat 915.919 kb on - strandat 915.924 kb on + strandat 915.924 kb on + strandat 915.924 kb on + strandat 915.960 kb on + strandat 915.960 kb on + strandat 915.960 kb on + strandat 916.248 kb on + strand, within ABID97_RS04425at 916.249 kb on - strand, within ABID97_RS04425at 916.521 kb on + strand, within ABID97_RS04425at 916.521 kb on + strand, within ABID97_RS04425at 916.522 kb on - strand, within ABID97_RS04425at 916.656 kb on - strandat 916.705 kb on - strandat 916.736 kb on + strandat 916.930 kb on - strandat 916.955 kb on + strandat 916.955 kb on + strandat 916.955 kb on + strandat 916.956 kb on - strandat 916.956 kb on - strandat 916.956 kb on - strandat 916.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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915,470 + ABID97_RS04420 0.44 +0.5
915,470 + ABID97_RS04420 0.44 -0.0
915,470 + ABID97_RS04420 0.44 -0.3
915,470 + ABID97_RS04420 0.44 -0.2
915,471 - ABID97_RS04420 0.45 +0.1
915,471 - ABID97_RS04420 0.45 +0.2
915,471 - ABID97_RS04420 0.45 -1.2
915,521 + ABID97_RS04420 0.55 -0.6
915,521 + ABID97_RS04420 0.55 -0.2
915,521 + ABID97_RS04420 0.55 -0.6
915,521 + ABID97_RS04420 0.55 -0.2
915,521 + ABID97_RS04420 0.55 +0.9
915,521 + ABID97_RS04420 0.55 -0.1
915,521 + ABID97_RS04420 0.55 +0.7
915,521 + ABID97_RS04420 0.55 -0.1
915,521 + ABID97_RS04420 0.55 -0.2
915,521 + ABID97_RS04420 0.55 +0.6
915,522 - ABID97_RS04420 0.55 +0.4
915,522 - ABID97_RS04420 0.55 -1.5
915,522 - ABID97_RS04420 0.55 +0.7
915,522 - ABID97_RS04420 0.55 -0.3
915,522 - ABID97_RS04420 0.55 -0.2
915,892 + +0.4
915,892 + +0.5
915,893 - -0.2
915,909 + +0.4
915,910 - -0.2
915,910 - -0.1
915,910 - +1.0
915,911 + +0.1
915,911 + -0.8
915,912 - +0.8
915,912 - -0.1
915,912 - -0.1
915,912 - +0.1
915,912 - +0.3
915,919 - -0.3
915,919 - -0.4
915,924 + -0.2
915,924 + -0.3
915,924 + +1.7
915,960 + +0.4
915,960 + +0.2
915,960 + +0.1
916,248 + ABID97_RS04425 0.49 -0.3
916,249 - ABID97_RS04425 0.49 +0.1
916,521 + ABID97_RS04425 0.88 -0.8
916,521 + ABID97_RS04425 0.88 +0.7
916,522 - ABID97_RS04425 0.88 -2.8
916,656 - -1.1
916,705 - +0.6
916,736 + -2.5
916,930 - +1.0
916,955 + +0.1
916,955 + -0.0
916,955 + -0.4
916,956 - -0.3
916,956 - +0.4
916,956 - -0.0
916,964 - +0.2

Or see this region's nucleotide sequence