Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04415 and ABID97_RS04420 are separated by 24 nucleotides ABID97_RS04420 and ABID97_RS04425 are separated by 169 nucleotides ABID97_RS04425 and ABID97_RS04430 are separated by 352 nucleotides
ABID97_RS04415: ABID97_RS04415 - tRNA 2-thiouridine(34) synthase MnmA, at 914,125 to 915,231
_RS04415
ABID97_RS04420: ABID97_RS04420 - NUDIX hydrolase, at 915,256 to 915,738
_RS04420
ABID97_RS04425: ABID97_RS04425 - response regulator transcription factor, at 915,908 to 916,603
_RS04425
ABID97_RS04430: ABID97_RS04430 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 916,956 to 918,086
_RS04430
Position (kb) 915
916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 915.470 kb on + strand, within ABID97_RS04420 at 915.470 kb on + strand, within ABID97_RS04420 at 915.470 kb on + strand, within ABID97_RS04420 at 915.470 kb on + strand, within ABID97_RS04420 at 915.471 kb on - strand, within ABID97_RS04420 at 915.471 kb on - strand, within ABID97_RS04420 at 915.471 kb on - strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.892 kb on + strand at 915.892 kb on + strand at 915.893 kb on - strand at 915.909 kb on + strand at 915.910 kb on - strand at 915.910 kb on - strand at 915.910 kb on - strand at 915.911 kb on + strand at 915.911 kb on + strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.919 kb on - strand at 915.919 kb on - strand at 915.924 kb on + strand at 915.924 kb on + strand at 915.924 kb on + strand at 915.960 kb on + strand at 915.960 kb on + strand at 915.960 kb on + strand at 916.248 kb on + strand, within ABID97_RS04425 at 916.249 kb on - strand, within ABID97_RS04425 at 916.521 kb on + strand, within ABID97_RS04425 at 916.521 kb on + strand, within ABID97_RS04425 at 916.522 kb on - strand, within ABID97_RS04425 at 916.656 kb on - strand at 916.705 kb on - strand at 916.736 kb on + strand at 916.930 kb on - strand at 916.955 kb on + strand at 916.955 kb on + strand at 916.955 kb on + strand at 916.956 kb on - strand at 916.956 kb on - strand at 916.956 kb on - strand at 916.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 915,470 + ABID97_RS04420 0.44 +0.5 915,470 + ABID97_RS04420 0.44 -0.0 915,470 + ABID97_RS04420 0.44 -0.3 915,470 + ABID97_RS04420 0.44 -0.2 915,471 - ABID97_RS04420 0.45 +0.1 915,471 - ABID97_RS04420 0.45 +0.2 915,471 - ABID97_RS04420 0.45 -1.2 915,521 + ABID97_RS04420 0.55 -0.6 915,521 + ABID97_RS04420 0.55 -0.2 915,521 + ABID97_RS04420 0.55 -0.6 915,521 + ABID97_RS04420 0.55 -0.2 915,521 + ABID97_RS04420 0.55 +0.9 915,521 + ABID97_RS04420 0.55 -0.1 915,521 + ABID97_RS04420 0.55 +0.7 915,521 + ABID97_RS04420 0.55 -0.1 915,521 + ABID97_RS04420 0.55 -0.2 915,521 + ABID97_RS04420 0.55 +0.6 915,522 - ABID97_RS04420 0.55 +0.4 915,522 - ABID97_RS04420 0.55 -1.5 915,522 - ABID97_RS04420 0.55 +0.7 915,522 - ABID97_RS04420 0.55 -0.3 915,522 - ABID97_RS04420 0.55 -0.2 915,892 + +0.4 915,892 + +0.5 915,893 - -0.2 915,909 + +0.4 915,910 - -0.2 915,910 - -0.1 915,910 - +1.0 915,911 + +0.1 915,911 + -0.8 915,912 - +0.8 915,912 - -0.1 915,912 - -0.1 915,912 - +0.1 915,912 - +0.3 915,919 - -0.3 915,919 - -0.4 915,924 + -0.2 915,924 + -0.3 915,924 + +1.7 915,960 + +0.4 915,960 + +0.2 915,960 + +0.1 916,248 + ABID97_RS04425 0.49 -0.3 916,249 - ABID97_RS04425 0.49 +0.1 916,521 + ABID97_RS04425 0.88 -0.8 916,521 + ABID97_RS04425 0.88 +0.7 916,522 - ABID97_RS04425 0.88 -2.8 916,656 - -1.1 916,705 - +0.6 916,736 + -2.5 916,930 - +1.0 916,955 + +0.1 916,955 + -0.0 916,955 + -0.4 916,956 - -0.3 916,956 - +0.4 916,956 - -0.0 916,964 - +0.2
Or see this region's nucleotide sequence