Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03380

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03370 and ABID97_RS03375 are separated by 148 nucleotidesABID97_RS03375 and ABID97_RS03380 are separated by 87 nucleotidesABID97_RS03380 and ABID97_RS03385 are separated by 116 nucleotides ABID97_RS03370: ABID97_RS03370 - phosphoenolpyruvate carboxykinase (GTP), at 680,874 to 682,742 _RS03370 ABID97_RS03375: ABID97_RS03375 - hypothetical protein, at 682,891 to 683,043 _RS03375 ABID97_RS03380: ABID97_RS03380 - threonine ammonia-lyase, at 683,131 to 684,355 _RS03380 ABID97_RS03385: ABID97_RS03385 - AAA family ATPase, at 684,472 to 686,796 _RS03385 Position (kb) 683 684 685Strain fitness (log2 ratio) -2 -1 0 1 2at 682.234 kb on + strand, within ABID97_RS03370at 682.234 kb on + strand, within ABID97_RS03370at 682.235 kb on - strand, within ABID97_RS03370at 682.235 kb on - strand, within ABID97_RS03370at 682.235 kb on - strand, within ABID97_RS03370at 682.282 kb on + strand, within ABID97_RS03370at 682.282 kb on + strand, within ABID97_RS03370at 682.283 kb on - strand, within ABID97_RS03370at 682.283 kb on - strand, within ABID97_RS03370at 682.283 kb on - strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.600 kb on + strandat 682.600 kb on + strandat 682.627 kb on + strandat 682.627 kb on + strandat 682.627 kb on + strandat 682.627 kb on + strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.755 kb on - strandat 682.901 kb on + strandat 682.901 kb on + strandat 682.901 kb on + strandat 682.901 kb on + strandat 682.901 kb on + strandat 683.087 kb on - strandat 683.113 kb on - strandat 683.898 kb on + strand, within ABID97_RS03380at 683.899 kb on - strand, within ABID97_RS03380at 683.899 kb on - strand, within ABID97_RS03380at 684.082 kb on - strand, within ABID97_RS03380at 684.432 kb on + strandat 684.432 kb on + strandat 684.433 kb on - strandat 684.805 kb on + strand, within ABID97_RS03385at 684.806 kb on - strand, within ABID97_RS03385at 684.830 kb on - strand, within ABID97_RS03385at 684.830 kb on - strand, within ABID97_RS03385at 684.830 kb on - strand, within ABID97_RS03385at 684.830 kb on - strand, within ABID97_RS03385at 684.841 kb on + strand, within ABID97_RS03385at 684.841 kb on + strand, within ABID97_RS03385at 684.841 kb on + strand, within ABID97_RS03385at 684.842 kb on - strand, within ABID97_RS03385at 684.842 kb on - strand, within ABID97_RS03385at 684.995 kb on + strand, within ABID97_RS03385at 684.995 kb on + strand, within ABID97_RS03385at 684.995 kb on + strand, within ABID97_RS03385at 684.996 kb on - strand, within ABID97_RS03385at 684.996 kb on - strand, within ABID97_RS03385at 684.996 kb on - strand, within ABID97_RS03385at 684.996 kb on - strand, within ABID97_RS03385at 684.996 kb on - strand, within ABID97_RS03385at 685.000 kb on + strand, within ABID97_RS03385at 685.078 kb on + strand, within ABID97_RS03385at 685.079 kb on - strand, within ABID97_RS03385at 685.079 kb on - strand, within ABID97_RS03385at 685.079 kb on - strand, within ABID97_RS03385

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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682,234 + ABID97_RS03370 0.73 +0.1
682,234 + ABID97_RS03370 0.73 +0.5
682,235 - ABID97_RS03370 0.73 +0.5
682,235 - ABID97_RS03370 0.73 -0.0
682,235 - ABID97_RS03370 0.73 +0.0
682,282 + ABID97_RS03370 0.75 -1.5
682,282 + ABID97_RS03370 0.75 +0.0
682,283 - ABID97_RS03370 0.75 +0.1
682,283 - ABID97_RS03370 0.75 -0.1
682,283 - ABID97_RS03370 0.75 -0.1
682,357 + ABID97_RS03370 0.79 +0.5
682,357 + ABID97_RS03370 0.79 +0.2
682,357 + ABID97_RS03370 0.79 +0.2
682,357 + ABID97_RS03370 0.79 +0.1
682,357 + ABID97_RS03370 0.79 +0.2
682,357 + ABID97_RS03370 0.79 +0.5
682,357 + ABID97_RS03370 0.79 +2.2
682,358 - ABID97_RS03370 0.79 +0.1
682,358 - ABID97_RS03370 0.79 +0.2
682,358 - ABID97_RS03370 0.79 +0.2
682,358 - ABID97_RS03370 0.79 -0.1
682,358 - ABID97_RS03370 0.79 +0.6
682,358 - ABID97_RS03370 0.79 -0.1
682,358 - ABID97_RS03370 0.79 +0.4
682,358 - ABID97_RS03370 0.79 +0.5
682,358 - ABID97_RS03370 0.79 -0.2
682,358 - ABID97_RS03370 0.79 +1.1
682,358 - ABID97_RS03370 0.79 +0.4
682,358 - ABID97_RS03370 0.79 +0.4
682,358 - ABID97_RS03370 0.79 +0.1
682,358 - ABID97_RS03370 0.79 +0.4
682,358 - ABID97_RS03370 0.79 +0.2
682,358 - ABID97_RS03370 0.79 +0.1
682,600 + -1.0
682,600 + +0.3
682,627 + +0.1
682,627 + +0.8
682,627 + +0.0
682,627 + +0.9
682,628 - -0.0
682,628 - +0.3
682,628 - +0.1
682,628 - -0.4
682,628 - +0.1
682,628 - +0.5
682,628 - +0.5
682,628 - +0.4
682,628 - +0.1
682,696 + -0.3
682,696 + -0.0
682,696 + +0.4
682,696 + +0.1
682,696 + +0.7
682,696 + -0.4
682,697 - +0.2
682,697 - +0.4
682,697 - +0.0
682,697 - -0.3
682,697 - +1.8
682,697 - -0.7
682,697 - +0.1
682,754 + -0.2
682,754 + +0.4
682,754 + +0.4
682,755 - -0.6
682,901 + -1.1
682,901 + +0.1
682,901 + +0.1
682,901 + +0.4
682,901 + +0.1
683,087 - -0.5
683,113 - +0.5
683,898 + ABID97_RS03380 0.63 +0.9
683,899 - ABID97_RS03380 0.63 +0.4
683,899 - ABID97_RS03380 0.63 -2.0
684,082 - ABID97_RS03380 0.78 +0.6
684,432 + -0.9
684,432 + +0.5
684,433 - -0.8
684,805 + ABID97_RS03385 0.14 -0.9
684,806 - ABID97_RS03385 0.14 +0.5
684,830 - ABID97_RS03385 0.15 -0.5
684,830 - ABID97_RS03385 0.15 -0.8
684,830 - ABID97_RS03385 0.15 -0.5
684,830 - ABID97_RS03385 0.15 +0.0
684,841 + ABID97_RS03385 0.16 +0.5
684,841 + ABID97_RS03385 0.16 -0.8
684,841 + ABID97_RS03385 0.16 -0.2
684,842 - ABID97_RS03385 0.16 -0.8
684,842 - ABID97_RS03385 0.16 -0.7
684,995 + ABID97_RS03385 0.22 -1.6
684,995 + ABID97_RS03385 0.22 +0.1
684,995 + ABID97_RS03385 0.22 -0.1
684,996 - ABID97_RS03385 0.23 -0.9
684,996 - ABID97_RS03385 0.23 -0.9
684,996 - ABID97_RS03385 0.23 -1.1
684,996 - ABID97_RS03385 0.23 -0.9
684,996 - ABID97_RS03385 0.23 -1.3
685,000 + ABID97_RS03385 0.23 -2.7
685,078 + ABID97_RS03385 0.26 -0.7
685,079 - ABID97_RS03385 0.26 -0.7
685,079 - ABID97_RS03385 0.26 -0.7
685,079 - ABID97_RS03385 0.26 -1.3

Or see this region's nucleotide sequence