Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01320 and ABID97_RS01325 overlap by 4 nucleotides ABID97_RS01325 and ABID97_RS01330 overlap by 28 nucleotides ABID97_RS01330 and ABID97_RS01335 are separated by 51 nucleotides
ABID97_RS01320: ABID97_RS01320 - ABC transporter ATP-binding protein, at 268,607 to 269,368
_RS01320
ABID97_RS01325: ABID97_RS01325 - branched-chain amino acid ABC transporter permease, at 269,365 to 270,219
_RS01325
ABID97_RS01330: ABID97_RS01330 - branched-chain amino acid ABC transporter permease, at 270,192 to 271,130
_RS01330
ABID97_RS01335: ABID97_RS01335 - flavin-dependent oxidoreductase, at 271,182 to 272,456
_RS01335
Position (kb) 270
271
272 Strain fitness (log2 ratio) -1
0
1
2 at 269.481 kb on - strand, within ABID97_RS01325 at 269.645 kb on + strand, within ABID97_RS01325 at 269.702 kb on + strand, within ABID97_RS01325 at 269.703 kb on - strand, within ABID97_RS01325 at 269.768 kb on + strand, within ABID97_RS01325 at 269.768 kb on + strand, within ABID97_RS01325 at 269.769 kb on - strand, within ABID97_RS01325 at 269.870 kb on - strand, within ABID97_RS01325 at 270.087 kb on - strand, within ABID97_RS01325 at 270.361 kb on + strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330 at 270.856 kb on + strand, within ABID97_RS01330 at 270.857 kb on - strand, within ABID97_RS01330 at 270.896 kb on - strand, within ABID97_RS01330 at 271.078 kb on + strand at 271.079 kb on - strand at 271.939 kb on + strand, within ABID97_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 269,481 - ABID97_RS01325 0.14 +0.3 269,645 + ABID97_RS01325 0.33 +0.1 269,702 + ABID97_RS01325 0.39 +0.3 269,703 - ABID97_RS01325 0.40 +2.6 269,768 + ABID97_RS01325 0.47 -0.3 269,768 + ABID97_RS01325 0.47 -0.2 269,769 - ABID97_RS01325 0.47 -0.0 269,870 - ABID97_RS01325 0.59 -0.3 270,087 - ABID97_RS01325 0.84 -0.3 270,361 + ABID97_RS01330 0.18 -1.2 270,362 - ABID97_RS01330 0.18 +1.1 270,362 - ABID97_RS01330 0.18 +0.3 270,856 + ABID97_RS01330 0.71 -0.2 270,857 - ABID97_RS01330 0.71 -1.4 270,896 - ABID97_RS01330 0.75 +0.0 271,078 + -0.5 271,079 - +0.3 271,939 + ABID97_RS01335 0.59 +0.0
Or see this region's nucleotide sequence