Strain Fitness in Escherichia coli BW25113 around b3903

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhaD and rhaA are separated by 450 nucleotidesrhaA and rhaB overlap by 4 nucleotides b3902: rhaD - rhamnulose-1-phosphate aldolase (NCBI), at 4,091,471 to 4,092,295 rhaD b3903: rhaA - L-rhamnose isomerase (NCBI), at 4,092,746 to 4,094,005 rhaA b3904: rhaB - rhamnulokinase (NCBI), at 4,094,002 to 4,095,471 rhaB Position (kb) 4092 4093 4094 4095Strain fitness (log2 ratio) -1 0 1at 4091.747 kb on - strand, within rhaDat 4091.747 kb on - strand, within rhaDat 4091.795 kb on - strand, within rhaDat 4091.795 kb on - strand, within rhaDat 4091.809 kb on - strand, within rhaDat 4091.809 kb on - strand, within rhaDat 4091.838 kb on + strand, within rhaDat 4091.873 kb on + strand, within rhaDat 4091.881 kb on - strand, within rhaDat 4091.881 kb on - strand, within rhaDat 4091.881 kb on - strand, within rhaDat 4091.921 kb on + strand, within rhaDat 4091.921 kb on + strand, within rhaDat 4091.959 kb on - strand, within rhaD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,091,747 - rhaD b3902 0.33 -0.2
4,091,747 - rhaD b3902 0.33 +0.0
4,091,795 - rhaD b3902 0.39 -0.8
4,091,795 - rhaD b3902 0.39 -0.7
4,091,809 - rhaD b3902 0.41 +1.4
4,091,809 - rhaD b3902 0.41 -0.4
4,091,838 + rhaD b3902 0.44 -0.5
4,091,873 + rhaD b3902 0.49 +0.2
4,091,881 - rhaD b3902 0.50 +0.8
4,091,881 - rhaD b3902 0.50 -0.6
4,091,881 - rhaD b3902 0.50 +1.0
4,091,921 + rhaD b3902 0.55 -0.5
4,091,921 + rhaD b3902 0.55 +0.6
4,091,959 - rhaD b3902 0.59 +0.7

Or see this region's nucleotide sequence