Strain Fitness in Escherichia coli BW25113 around b3670

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
3,847,825	-	uhpB	b3668	0.78	+0.6
3,847,825	-	uhpB	b3668	0.78	+0.2
3,847,828	-	uhpB	b3668	0.78	-0.4
3,847,828	-	uhpB	b3668	0.78	+0.9
3,847,880	-	uhpB	b3668	0.81	+1.1
3,847,883	-	uhpB	b3668	0.82	+0.3
3,847,883	-	uhpB	b3668	0.82	+0.3
3,847,942	+	uhpB	b3668	0.85	-0.3
3,848,011	-				+0.6
3,848,016	-				-1.0
3,848,029	-				+0.3
3,848,029	-				-0.2
3,848,043	+				-0.2
3,848,045	+				+0.0
3,848,047	+				+0.2
3,848,074	-				-0.6
3,848,074	-				-0.2
3,848,083	-				-0.7
3,848,094	-				+0.3
3,848,129	+				-0.3
3,848,129	+				+0.6
3,848,163	-				-0.6
3,848,165	+				+0.1
3,848,193	+				-0.4
3,848,193	+				+0.3
3,848,196	-				+0.4
3,848,237	+	uhpA	b3669	0.13	-1.0
3,848,250	-	uhpA	b3669	0.15	+2.2
3,848,261	+	uhpA	b3669	0.17	+0.5
3,848,285	-	uhpA	b3669	0.21	-1.2
3,848,370	-	uhpA	b3669	0.36	-0.6
3,848,439	+	uhpA	b3669	0.47	-1.7
3,848,492	-	uhpA	b3669	0.56	-1.4
3,848,492	-	uhpA	b3669	0.56	+0.0
3,848,494	+	uhpA	b3669	0.57	-0.5
3,848,494	+	uhpA	b3669	0.57	-0.1
3,848,494	+	uhpA	b3669	0.57	+1.0
3,848,494	+	uhpA	b3669	0.57	+0.2
3,848,504	+	uhpA	b3669	0.58	+0.7
3,848,504	+	uhpA	b3669	0.58	-1.8
3,848,524	-	uhpA	b3669	0.62	+1.0
3,848,524	-	uhpA	b3669	0.62	+0.2
3,848,524	-	uhpA	b3669	0.62	+0.6
3,848,526	-	uhpA	b3669	0.62	-0.0
3,848,565	-	uhpA	b3669	0.69	-1.3
3,848,565	-	uhpA	b3669	0.69	+1.3
3,848,571	+	uhpA	b3669	0.70	+0.7
3,848,571	+	uhpA	b3669	0.70	-1.4
3,848,577	+	uhpA	b3669	0.71	+0.5
3,848,585	-	uhpA	b3669	0.72	+0.3
3,848,595	+	uhpA	b3669	0.74	-0.0
3,848,603	-	uhpA	b3669	0.75	-0.2
3,848,608	-	uhpA	b3669	0.76	+0.9
3,848,610	-	uhpA	b3669	0.76	-0.4
3,848,719	+				-1.2
3,848,734	+				-0.5
3,848,904	-	ilvN	b3670	0.27	-2.1
3,848,921	+	ilvN	b3670	0.33	-3.5
3,848,950	+	ilvN	b3670	0.43	-1.3
3,848,953	+	ilvN	b3670	0.44	-0.8
3,848,953	+	ilvN	b3670	0.44	-0.6
3,848,958	-	ilvN	b3670	0.46	-2.4
3,848,958	-	ilvN	b3670	0.46	-2.2
3,848,966	+	ilvN	b3670	0.48	-3.6
3,848,978	+	ilvN	b3670	0.53	-2.9
3,848,978	+	ilvN	b3670	0.53	-2.6
3,848,986	-	ilvN	b3670	0.55	-1.8
3,849,000	-	ilvN	b3670	0.60	-1.2
3,849,000	-	ilvN	b3670	0.60	-1.7
3,849,044	-	ilvN	b3670	0.75	-0.7
3,849,044	-	ilvN	b3670	0.75	-2.2
3,849,044	-	ilvN	b3670	0.75	-0.8
3,849,050	+	ilvN	b3670	0.77	-2.1
3,849,050	+	ilvN	b3670	0.77	-1.0
3,849,055	-	ilvN	b3670	0.79	-3.1
3,849,103	-				-1.5
3,849,103	-				-0.5
3,849,110	-				+0.4
3,849,140	-				-1.1
3,849,193	+				-4.2
3,849,391	-	ilvB	b3671	0.16	-3.0
3,849,404	-	ilvB	b3671	0.17	-1.5
3,849,404	-	ilvB	b3671	0.17	-2.1
3,849,467	-	ilvB	b3671	0.21	-4.0
3,849,485	-	ilvB	b3671	0.22	-3.5
3,849,496	-	ilvB	b3671	0.22	-2.8
3,849,517	+	ilvB	b3671	0.24	-3.0
3,849,568	-	ilvB	b3671	0.27	-1.2
3,849,576	+	ilvB	b3671	0.27	-5.1
3,849,578	+	ilvB	b3671	0.27	-2.5
3,849,598	+	ilvB	b3671	0.28	-5.7
3,849,605	+	ilvB	b3671	0.29	-2.6
3,849,615	+	ilvB	b3671	0.29	-1.9
3,849,617	+	ilvB	b3671	0.29	-1.8
3,849,617	+	ilvB	b3671	0.29	-4.0
3,849,626	+	ilvB	b3671	0.30	-2.4
3,849,636	+	ilvB	b3671	0.31	-3.5
3,849,775	-	ilvB	b3671	0.39	-1.8
3,849,828	-	ilvB	b3671	0.42	-3.7
3,849,846	+	ilvB	b3671	0.43	-1.6
3,849,917	+	ilvB	b3671	0.47	-3.1
3,849,917	+	ilvB	b3671	0.47	-2.6
3,850,001	-	ilvB	b3671	0.52	-3.5
3,850,024	-	ilvB	b3671	0.54	-3.2
3,850,027	+	ilvB	b3671	0.54	-2.8
3,850,027	+	ilvB	b3671	0.54	-1.2
3,850,027	+	ilvB	b3671	0.54	-3.0