Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fucI and fucK are separated by 78 nucleotides fucK and fucU are separated by 1 nucleotides fucU and fucR are separated by 57 nucleotides
b2802: fucI - L-fucose isomerase (NCBI), at 2,933,606 to 2,935,381
fucI
b2803: fucK - L-fuculokinase (NCBI), at 2,935,460 to 2,936,908
fucK
b2804: fucU - L-fucose mutarotase (NCBI), at 2,936,910 to 2,937,332
fucU
b2805: fucR - DNA-binding transcriptional activator (NCBI), at 2,937,390 to 2,938,121
fucR
Position (kb)
2935
2936
2937 Strain fitness (log2 ratio)
-1
0
1
2 at 2934.514 kb on + strand, within fucI at 2934.522 kb on - strand, within fucI at 2934.533 kb on - strand, within fucI at 2934.536 kb on + strand, within fucI at 2934.536 kb on + strand, within fucI at 2934.546 kb on - strand, within fucI at 2934.546 kb on - strand, within fucI at 2934.554 kb on - strand, within fucI at 2934.565 kb on - strand, within fucI at 2934.565 kb on - strand, within fucI at 2934.565 kb on - strand, within fucI at 2934.565 kb on - strand, within fucI at 2934.622 kb on - strand, within fucI at 2934.643 kb on + strand, within fucI at 2934.671 kb on + strand, within fucI at 2934.692 kb on + strand, within fucI at 2934.762 kb on + strand, within fucI at 2935.022 kb on - strand, within fucI at 2935.044 kb on - strand, within fucI at 2935.101 kb on + strand, within fucI at 2935.126 kb on - strand, within fucI at 2935.153 kb on + strand, within fucI at 2935.156 kb on + strand, within fucI at 2935.156 kb on + strand, within fucI at 2935.186 kb on + strand, within fucI at 2935.186 kb on + strand, within fucI at 2935.236 kb on + strand at 2935.236 kb on + strand at 2935.300 kb on + strand at 2935.321 kb on + strand at 2935.378 kb on + strand at 2935.398 kb on - strand at 2935.432 kb on - strand at 2935.433 kb on + strand at 2935.504 kb on - strand at 2935.504 kb on - strand at 2935.518 kb on + strand at 2935.589 kb on - strand at 2935.686 kb on + strand, within fucK at 2935.817 kb on + strand, within fucK at 2935.929 kb on + strand, within fucK at 2935.929 kb on + strand, within fucK at 2936.145 kb on - strand, within fucK at 2936.230 kb on + strand, within fucK at 2936.304 kb on + strand, within fucK at 2936.330 kb on + strand, within fucK at 2936.330 kb on + strand, within fucK at 2936.382 kb on - strand, within fucK at 2936.382 kb on - strand, within fucK at 2936.392 kb on - strand, within fucK at 2936.441 kb on + strand, within fucK at 2936.538 kb on + strand, within fucK at 2936.538 kb on + strand, within fucK at 2936.628 kb on + strand, within fucK at 2936.630 kb on + strand, within fucK at 2936.630 kb on + strand, within fucK at 2936.656 kb on + strand, within fucK at 2936.656 kb on + strand, within fucK at 2936.664 kb on - strand, within fucK at 2936.664 kb on - strand, within fucK at 2936.808 kb on - strand at 2936.845 kb on + strand at 2936.845 kb on + strand at 2936.974 kb on - strand, within fucU at 2936.974 kb on - strand, within fucU at 2937.103 kb on + strand, within fucU at 2937.103 kb on + strand, within fucU at 2937.173 kb on + strand, within fucU at 2937.434 kb on - strand at 2937.434 kb on - strand at 2937.439 kb on - strand at 2937.473 kb on - strand, within fucR at 2937.629 kb on + strand, within fucR at 2937.677 kb on - strand, within fucR at 2937.677 kb on - strand, within fucR at 2937.681 kb on + strand, within fucR at 2937.747 kb on - strand, within fucR at 2937.769 kb on + strand, within fucR at 2937.769 kb on + strand, within fucR at 2937.811 kb on - strand, within fucR at 2937.811 kb on - strand, within fucR at 2937.817 kb on + strand, within fucR at 2937.862 kb on + strand, within fucR
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 2,934,514 + fucI b2802 0.51 -0.2 2,934,522 - fucI b2802 0.52 -0.6 2,934,533 - fucI b2802 0.52 +1.8 2,934,536 + fucI b2802 0.52 +0.0 2,934,536 + fucI b2802 0.52 -0.4 2,934,546 - fucI b2802 0.53 +2.0 2,934,546 - fucI b2802 0.53 -0.7 2,934,554 - fucI b2802 0.53 -1.3 2,934,565 - fucI b2802 0.54 +0.6 2,934,565 - fucI b2802 0.54 -0.3 2,934,565 - fucI b2802 0.54 -0.2 2,934,565 - fucI b2802 0.54 -0.1 2,934,622 - fucI b2802 0.57 +0.2 2,934,643 + fucI b2802 0.58 +0.1 2,934,671 + fucI b2802 0.60 +0.9 2,934,692 + fucI b2802 0.61 +0.3 2,934,762 + fucI b2802 0.65 -0.3 2,935,022 - fucI b2802 0.80 -0.2 2,935,044 - fucI b2802 0.81 +0.8 2,935,101 + fucI b2802 0.84 +0.6 2,935,126 - fucI b2802 0.86 -0.1 2,935,153 + fucI b2802 0.87 -0.4 2,935,156 + fucI b2802 0.87 +0.3 2,935,156 + fucI b2802 0.87 +0.4 2,935,186 + fucI b2802 0.89 -1.4 2,935,186 + fucI b2802 0.89 +0.2 2,935,236 + +0.6 2,935,236 + +0.6 2,935,300 + -0.4 2,935,321 + +0.3 2,935,378 + +0.7 2,935,398 - -0.4 2,935,432 - +0.5 2,935,433 + -0.7 2,935,504 - -0.5 2,935,504 - -0.2 2,935,518 + +0.5 2,935,589 - +0.5 2,935,686 + fucK b2803 0.16 -0.2 2,935,817 + fucK b2803 0.25 +0.2 2,935,929 + fucK b2803 0.32 +0.1 2,935,929 + fucK b2803 0.32 -0.4 2,936,145 - fucK b2803 0.47 -0.9 2,936,230 + fucK b2803 0.53 -0.1 2,936,304 + fucK b2803 0.58 +0.8 2,936,330 + fucK b2803 0.60 +0.5 2,936,330 + fucK b2803 0.60 -0.2 2,936,382 - fucK b2803 0.64 -1.2 2,936,382 - fucK b2803 0.64 +0.2 2,936,392 - fucK b2803 0.64 +0.3 2,936,441 + fucK b2803 0.68 +0.6 2,936,538 + fucK b2803 0.74 -0.2 2,936,538 + fucK b2803 0.74 -0.6 2,936,628 + fucK b2803 0.81 +0.1 2,936,630 + fucK b2803 0.81 +0.2 2,936,630 + fucK b2803 0.81 -0.4 2,936,656 + fucK b2803 0.83 +0.3 2,936,656 + fucK b2803 0.83 +0.5 2,936,664 - fucK b2803 0.83 +1.8 2,936,664 - fucK b2803 0.83 -0.0 2,936,808 - +0.1 2,936,845 + +0.2 2,936,845 + -0.0 2,936,974 - fucU b2804 0.15 -0.5 2,936,974 - fucU b2804 0.15 +0.2 2,937,103 + fucU b2804 0.46 +0.2 2,937,103 + fucU b2804 0.46 +0.9 2,937,173 + fucU b2804 0.62 -0.9 2,937,434 - +0.3 2,937,434 - +0.6 2,937,439 - -0.2 2,937,473 - fucR b2805 0.11 +0.8 2,937,629 + fucR b2805 0.33 -0.9 2,937,677 - fucR b2805 0.39 -0.2 2,937,677 - fucR b2805 0.39 -1.1 2,937,681 + fucR b2805 0.40 -0.6 2,937,747 - fucR b2805 0.49 +0.2 2,937,769 + fucR b2805 0.52 -0.7 2,937,769 + fucR b2805 0.52 -0.0 2,937,811 - fucR b2805 0.58 -0.4 2,937,811 - fucR b2805 0.58 -0.8 2,937,817 + fucR b2805 0.58 +0.4 2,937,862 + fucR b2805 0.64 +0.0
Or see this region's nucleotide sequence