Experiment: Shikimic Acid carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04694 and PFR28_04695 are separated by 212 nucleotides PFR28_04695 and PFR28_04696 are separated by 194 nucleotides PFR28_04696 and PFR28_04697 overlap by 20 nucleotides
PFR28_04694: PFR28_04694 - Carbonic anhydrase 1, at 5,353,323 to 5,354,054
_04694
PFR28_04695: PFR28_04695 - hypothetical protein, at 5,354,267 to 5,355,325
_04695
PFR28_04696: PFR28_04696 - hypothetical protein, at 5,355,520 to 5,356,194
_04696
PFR28_04697: PFR28_04697 - Oligopeptidase A, at 5,356,175 to 5,358,196
_04697
Position (kb) 5354
5355
5356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5353.314 kb on + strand at 5353.314 kb on + strand at 5353.314 kb on + strand at 5353.314 kb on + strand at 5353.315 kb on - strand at 5353.315 kb on - strand at 5353.315 kb on - strand at 5353.325 kb on - strand at 5353.432 kb on + strand, within PFR28_04694 at 5353.432 kb on + strand, within PFR28_04694 at 5353.432 kb on + strand, within PFR28_04694 at 5353.432 kb on + strand, within PFR28_04694 at 5353.432 kb on + strand, within PFR28_04694 at 5353.432 kb on + strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.433 kb on - strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.826 kb on + strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.827 kb on - strand, within PFR28_04694 at 5353.970 kb on + strand, within PFR28_04694 at 5353.970 kb on + strand, within PFR28_04694 at 5353.970 kb on + strand, within PFR28_04694 at 5353.970 kb on + strand, within PFR28_04694 at 5353.970 kb on + strand, within PFR28_04694 at 5353.971 kb on - strand, within PFR28_04694 at 5353.971 kb on - strand, within PFR28_04694 at 5353.971 kb on - strand, within PFR28_04694 at 5353.971 kb on - strand, within PFR28_04694 at 5353.971 kb on - strand, within PFR28_04694 at 5354.039 kb on + strand at 5354.039 kb on + strand at 5354.090 kb on + strand at 5354.168 kb on + strand at 5354.192 kb on + strand at 5354.193 kb on - strand at 5354.204 kb on + strand at 5354.204 kb on + strand at 5354.204 kb on + strand at 5354.217 kb on + strand at 5354.323 kb on - strand at 5354.323 kb on - strand at 5354.433 kb on + strand, within PFR28_04695 at 5354.434 kb on - strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.554 kb on + strand, within PFR28_04695 at 5354.555 kb on - strand, within PFR28_04695 at 5354.555 kb on - strand, within PFR28_04695 at 5354.555 kb on - strand, within PFR28_04695 at 5354.555 kb on - strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.556 kb on + strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.557 kb on - strand, within PFR28_04695 at 5354.925 kb on + strand, within PFR28_04695 at 5354.926 kb on - strand, within PFR28_04695 at 5355.063 kb on + strand, within PFR28_04695 at 5355.064 kb on - strand, within PFR28_04695 at 5355.084 kb on + strand, within PFR28_04695 at 5355.084 kb on + strand, within PFR28_04695 at 5355.085 kb on - strand, within PFR28_04695 at 5355.085 kb on - strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.090 kb on + strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.091 kb on - strand, within PFR28_04695 at 5355.218 kb on + strand, within PFR28_04695 at 5355.219 kb on - strand, within PFR28_04695 at 5355.219 kb on - strand, within PFR28_04695 at 5355.219 kb on - strand, within PFR28_04695 at 5355.228 kb on + strand at 5355.332 kb on - strand at 5355.332 kb on - strand at 5355.332 kb on - strand at 5355.332 kb on - strand at 5355.346 kb on + strand at 5355.354 kb on + strand at 5355.377 kb on + strand at 5355.378 kb on - strand at 5355.378 kb on - strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.517 kb on + strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.518 kb on - strand at 5355.653 kb on - strand, within PFR28_04696 at 5355.653 kb on - strand, within PFR28_04696 at 5355.653 kb on - strand, within PFR28_04696 at 5355.653 kb on - strand, within PFR28_04696 at 5355.788 kb on + strand, within PFR28_04696 at 5355.788 kb on + strand, within PFR28_04696 at 5355.788 kb on + strand, within PFR28_04696 at 5355.788 kb on + strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.789 kb on - strand, within PFR28_04696 at 5355.839 kb on + strand, within PFR28_04696 at 5355.839 kb on + strand, within PFR28_04696 at 5355.839 kb on + strand, within PFR28_04696 at 5355.839 kb on + strand, within PFR28_04696 at 5355.839 kb on + strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.840 kb on - strand, within PFR28_04696 at 5355.940 kb on + strand, within PFR28_04696 at 5355.940 kb on + strand, within PFR28_04696 at 5355.940 kb on + strand, within PFR28_04696 at 5355.941 kb on - strand, within PFR28_04696 at 5356.039 kb on + strand, within PFR28_04696 at 5356.039 kb on + strand, within PFR28_04696 at 5356.039 kb on + strand, within PFR28_04696 at 5356.039 kb on + strand, within PFR28_04696 at 5356.039 kb on + strand, within PFR28_04696 at 5356.039 kb on + strand, within PFR28_04696 at 5356.039 kb on + strand, within PFR28_04696 at 5356.040 kb on - strand, within PFR28_04696 at 5356.040 kb on - strand, within PFR28_04696 at 5356.040 kb on - strand, within PFR28_04696 at 5356.040 kb on - strand, within PFR28_04696 at 5356.098 kb on + strand, within PFR28_04696 at 5356.098 kb on + strand, within PFR28_04696 at 5356.099 kb on - strand, within PFR28_04696 at 5356.147 kb on - strand at 5356.214 kb on + strand at 5356.214 kb on + strand at 5356.214 kb on + strand at 5356.215 kb on - strand at 5356.215 kb on - strand at 5356.215 kb on - strand at 5356.215 kb on - strand at 5356.215 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Shikimic Acid carbon 10 mM remove 5,353,314 + -0.3 5,353,314 + -0.5 5,353,314 + -1.3 5,353,314 + -0.7 5,353,315 - +0.4 5,353,315 - -0.7 5,353,315 - -0.3 5,353,325 - -2.9 5,353,432 + PFR28_04694 0.15 -0.3 5,353,432 + PFR28_04694 0.15 -2.3 5,353,432 + PFR28_04694 0.15 +0.9 5,353,432 + PFR28_04694 0.15 +0.0 5,353,432 + PFR28_04694 0.15 +0.1 5,353,432 + PFR28_04694 0.15 -0.5 5,353,433 - PFR28_04694 0.15 +1.0 5,353,433 - PFR28_04694 0.15 +0.3 5,353,433 - PFR28_04694 0.15 -0.7 5,353,433 - PFR28_04694 0.15 -0.6 5,353,433 - PFR28_04694 0.15 +0.9 5,353,433 - PFR28_04694 0.15 +0.6 5,353,433 - PFR28_04694 0.15 +0.1 5,353,433 - PFR28_04694 0.15 -0.8 5,353,826 + PFR28_04694 0.69 +0.5 5,353,826 + PFR28_04694 0.69 -0.7 5,353,826 + PFR28_04694 0.69 +0.5 5,353,826 + PFR28_04694 0.69 +0.9 5,353,826 + PFR28_04694 0.69 +0.3 5,353,826 + PFR28_04694 0.69 -0.2 5,353,826 + PFR28_04694 0.69 +0.6 5,353,826 + PFR28_04694 0.69 -0.2 5,353,826 + PFR28_04694 0.69 +0.4 5,353,827 - PFR28_04694 0.69 -0.3 5,353,827 - PFR28_04694 0.69 -0.5 5,353,827 - PFR28_04694 0.69 -0.2 5,353,827 - PFR28_04694 0.69 -1.0 5,353,827 - PFR28_04694 0.69 -1.1 5,353,827 - PFR28_04694 0.69 +0.5 5,353,827 - PFR28_04694 0.69 -0.5 5,353,827 - PFR28_04694 0.69 +0.7 5,353,827 - PFR28_04694 0.69 +1.0 5,353,970 + PFR28_04694 0.88 +0.1 5,353,970 + PFR28_04694 0.88 +0.1 5,353,970 + PFR28_04694 0.88 +0.4 5,353,970 + PFR28_04694 0.88 +2.0 5,353,970 + PFR28_04694 0.88 +0.2 5,353,971 - PFR28_04694 0.89 +0.5 5,353,971 - PFR28_04694 0.89 +0.8 5,353,971 - PFR28_04694 0.89 -0.1 5,353,971 - PFR28_04694 0.89 -0.5 5,353,971 - PFR28_04694 0.89 +0.8 5,354,039 + +0.5 5,354,039 + +0.5 5,354,090 + -0.1 5,354,168 + -0.5 5,354,192 + +0.1 5,354,193 - +0.2 5,354,204 + -0.2 5,354,204 + -1.3 5,354,204 + +0.7 5,354,217 + -0.9 5,354,323 - -0.1 5,354,323 - -0.1 5,354,433 + PFR28_04695 0.16 +0.4 5,354,434 - PFR28_04695 0.16 -0.3 5,354,554 + PFR28_04695 0.27 -0.8 5,354,554 + PFR28_04695 0.27 +0.9 5,354,554 + PFR28_04695 0.27 -0.6 5,354,554 + PFR28_04695 0.27 -1.3 5,354,554 + PFR28_04695 0.27 -0.3 5,354,554 + PFR28_04695 0.27 +1.3 5,354,554 + PFR28_04695 0.27 -0.1 5,354,554 + PFR28_04695 0.27 +0.3 5,354,554 + PFR28_04695 0.27 +0.6 5,354,555 - PFR28_04695 0.27 -0.2 5,354,555 - PFR28_04695 0.27 +1.5 5,354,555 - PFR28_04695 0.27 +0.8 5,354,555 - PFR28_04695 0.27 +0.9 5,354,556 + PFR28_04695 0.27 +1.4 5,354,556 + PFR28_04695 0.27 +0.0 5,354,556 + PFR28_04695 0.27 -0.1 5,354,556 + PFR28_04695 0.27 -0.7 5,354,556 + PFR28_04695 0.27 -1.6 5,354,556 + PFR28_04695 0.27 +0.4 5,354,556 + PFR28_04695 0.27 +0.3 5,354,556 + PFR28_04695 0.27 +2.3 5,354,556 + PFR28_04695 0.27 -0.3 5,354,556 + PFR28_04695 0.27 +0.7 5,354,556 + PFR28_04695 0.27 +1.1 5,354,556 + PFR28_04695 0.27 +1.5 5,354,556 + PFR28_04695 0.27 -1.1 5,354,556 + PFR28_04695 0.27 +0.1 5,354,556 + PFR28_04695 0.27 +0.5 5,354,557 - PFR28_04695 0.27 -0.3 5,354,557 - PFR28_04695 0.27 -1.1 5,354,557 - PFR28_04695 0.27 -1.6 5,354,557 - PFR28_04695 0.27 +0.3 5,354,557 - PFR28_04695 0.27 +1.4 5,354,557 - PFR28_04695 0.27 -0.5 5,354,557 - PFR28_04695 0.27 -1.0 5,354,557 - PFR28_04695 0.27 +0.6 5,354,557 - PFR28_04695 0.27 -0.5 5,354,557 - PFR28_04695 0.27 +1.2 5,354,557 - PFR28_04695 0.27 +0.5 5,354,557 - PFR28_04695 0.27 -1.0 5,354,925 + PFR28_04695 0.62 +0.5 5,354,926 - PFR28_04695 0.62 -1.0 5,355,063 + PFR28_04695 0.75 +0.1 5,355,064 - PFR28_04695 0.75 +0.9 5,355,084 + PFR28_04695 0.77 -0.7 5,355,084 + PFR28_04695 0.77 +0.5 5,355,085 - PFR28_04695 0.77 -2.1 5,355,085 - PFR28_04695 0.77 -2.7 5,355,090 + PFR28_04695 0.78 -0.3 5,355,090 + PFR28_04695 0.78 +1.5 5,355,090 + PFR28_04695 0.78 -0.2 5,355,090 + PFR28_04695 0.78 +1.8 5,355,090 + PFR28_04695 0.78 -0.3 5,355,090 + PFR28_04695 0.78 -0.4 5,355,090 + PFR28_04695 0.78 -0.6 5,355,090 + PFR28_04695 0.78 +0.2 5,355,091 - PFR28_04695 0.78 +0.1 5,355,091 - PFR28_04695 0.78 +1.0 5,355,091 - PFR28_04695 0.78 +0.1 5,355,091 - PFR28_04695 0.78 -2.9 5,355,091 - PFR28_04695 0.78 +0.7 5,355,091 - PFR28_04695 0.78 -0.8 5,355,091 - PFR28_04695 0.78 +0.3 5,355,091 - PFR28_04695 0.78 +0.4 5,355,218 + PFR28_04695 0.90 +0.6 5,355,219 - PFR28_04695 0.90 -0.9 5,355,219 - PFR28_04695 0.90 +1.5 5,355,219 - PFR28_04695 0.90 +0.4 5,355,228 + -0.7 5,355,332 - -0.7 5,355,332 - -0.2 5,355,332 - +0.2 5,355,332 - -0.5 5,355,346 + +1.4 5,355,354 + -0.4 5,355,377 + -2.4 5,355,378 - -0.4 5,355,378 - -0.3 5,355,517 + -1.1 5,355,517 + +0.3 5,355,517 + -0.7 5,355,517 + +0.5 5,355,517 + +0.5 5,355,517 + -0.2 5,355,517 + -0.1 5,355,517 + -0.2 5,355,517 + +0.1 5,355,517 + +0.1 5,355,517 + -1.1 5,355,517 + -0.1 5,355,518 - +0.2 5,355,518 - +0.3 5,355,518 - -0.1 5,355,518 - -0.6 5,355,518 - +1.7 5,355,518 - -0.4 5,355,518 - +2.5 5,355,518 - -0.8 5,355,518 - -0.9 5,355,653 - PFR28_04696 0.20 -0.3 5,355,653 - PFR28_04696 0.20 -1.0 5,355,653 - PFR28_04696 0.20 +0.0 5,355,653 - PFR28_04696 0.20 +0.5 5,355,788 + PFR28_04696 0.40 +0.2 5,355,788 + PFR28_04696 0.40 +0.1 5,355,788 + PFR28_04696 0.40 +2.9 5,355,788 + PFR28_04696 0.40 +0.2 5,355,789 - PFR28_04696 0.40 -0.7 5,355,789 - PFR28_04696 0.40 +0.9 5,355,789 - PFR28_04696 0.40 -0.6 5,355,789 - PFR28_04696 0.40 +0.6 5,355,789 - PFR28_04696 0.40 +2.5 5,355,789 - PFR28_04696 0.40 +0.6 5,355,789 - PFR28_04696 0.40 -0.4 5,355,789 - PFR28_04696 0.40 -0.9 5,355,789 - PFR28_04696 0.40 +0.2 5,355,789 - PFR28_04696 0.40 +0.2 5,355,839 + PFR28_04696 0.47 +0.2 5,355,839 + PFR28_04696 0.47 -0.2 5,355,839 + PFR28_04696 0.47 +0.7 5,355,839 + PFR28_04696 0.47 -0.2 5,355,839 + PFR28_04696 0.47 +0.3 5,355,840 - PFR28_04696 0.47 +1.5 5,355,840 - PFR28_04696 0.47 +0.0 5,355,840 - PFR28_04696 0.47 -1.1 5,355,840 - PFR28_04696 0.47 -0.9 5,355,840 - PFR28_04696 0.47 +0.8 5,355,840 - PFR28_04696 0.47 +0.1 5,355,840 - PFR28_04696 0.47 +0.1 5,355,840 - PFR28_04696 0.47 -0.1 5,355,840 - PFR28_04696 0.47 -1.2 5,355,940 + PFR28_04696 0.62 -1.4 5,355,940 + PFR28_04696 0.62 -0.7 5,355,940 + PFR28_04696 0.62 +0.1 5,355,941 - PFR28_04696 0.62 +0.1 5,356,039 + PFR28_04696 0.77 -0.8 5,356,039 + PFR28_04696 0.77 +1.1 5,356,039 + PFR28_04696 0.77 -0.5 5,356,039 + PFR28_04696 0.77 -0.2 5,356,039 + PFR28_04696 0.77 +1.4 5,356,039 + PFR28_04696 0.77 +0.4 5,356,039 + PFR28_04696 0.77 +0.8 5,356,040 - PFR28_04696 0.77 +0.3 5,356,040 - PFR28_04696 0.77 -0.0 5,356,040 - PFR28_04696 0.77 -0.4 5,356,040 - PFR28_04696 0.77 -1.8 5,356,098 + PFR28_04696 0.86 -0.1 5,356,098 + PFR28_04696 0.86 -0.5 5,356,099 - PFR28_04696 0.86 -0.7 5,356,147 - +0.4 5,356,214 + +0.7 5,356,214 + -0.7 5,356,214 + -0.6 5,356,215 - +0.0 5,356,215 - -0.7 5,356,215 - +0.4 5,356,215 - +0.6 5,356,215 - -0.1
Or see this region's nucleotide sequence