Strain Fitness in Pseudomonas sp. S08-1 around OH686_23750

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23740 and OH686_23745 overlap by 4 nucleotidesOH686_23745 and OH686_23750 overlap by 38 nucleotidesOH686_23750 and OH686_23755 are separated by 11 nucleotides OH686_23740: OH686_23740 - Phosphoserine phosphatase rsbX , at 4,809,655 to 4,810,629 _23740 OH686_23745: OH686_23745 - Anti-sigma B factor RsbT, at 4,810,626 to 4,811,021 _23745 OH686_23750: OH686_23750 - RsbS, negative regulator of sigma-B, at 4,810,984 to 4,811,406 _23750 OH686_23755: OH686_23755 - RsbT co-antagonist protein RsbRA, at 4,811,418 to 4,812,257 _23755 Position (kb) 4810 4811 4812Strain fitness (log2 ratio) -1 0 1 2at 4810.023 kb on + strand, within OH686_23740at 4810.023 kb on + strand, within OH686_23740at 4810.023 kb on + strand, within OH686_23740at 4810.023 kb on + strand, within OH686_23740at 4810.023 kb on + strand, within OH686_23740at 4810.023 kb on + strand, within OH686_23740at 4810.023 kb on + strand, within OH686_23740at 4810.023 kb on + strand, within OH686_23740at 4810.033 kb on + strand, within OH686_23740at 4810.033 kb on + strand, within OH686_23740at 4810.283 kb on + strand, within OH686_23740at 4810.283 kb on + strand, within OH686_23740at 4810.287 kb on + strand, within OH686_23740at 4810.288 kb on - strand, within OH686_23740at 4810.352 kb on + strand, within OH686_23740at 4810.352 kb on + strand, within OH686_23740at 4810.352 kb on + strand, within OH686_23740at 4810.353 kb on - strand, within OH686_23740at 4810.436 kb on + strand, within OH686_23740at 4810.437 kb on - strand, within OH686_23740at 4810.437 kb on - strand, within OH686_23740at 4810.437 kb on - strand, within OH686_23740at 4810.437 kb on - strand, within OH686_23740at 4810.439 kb on + strand, within OH686_23740at 4810.439 kb on + strand, within OH686_23740at 4810.439 kb on + strand, within OH686_23740at 4810.439 kb on + strand, within OH686_23740at 4810.439 kb on + strand, within OH686_23740at 4810.439 kb on + strand, within OH686_23740at 4810.440 kb on - strand, within OH686_23740at 4810.641 kb on + strandat 4810.641 kb on + strandat 4810.641 kb on + strandat 4810.641 kb on + strandat 4810.642 kb on - strandat 4810.642 kb on - strandat 4810.642 kb on - strandat 4810.725 kb on + strand, within OH686_23745at 4810.742 kb on + strand, within OH686_23745at 4810.742 kb on + strand, within OH686_23745at 4810.742 kb on + strand, within OH686_23745at 4810.742 kb on + strand, within OH686_23745at 4810.742 kb on + strand, within OH686_23745at 4810.742 kb on + strand, within OH686_23745at 4810.742 kb on + strand, within OH686_23745at 4810.743 kb on - strand, within OH686_23745at 4810.743 kb on - strand, within OH686_23745at 4810.743 kb on - strand, within OH686_23745at 4810.743 kb on - strand, within OH686_23745at 4810.744 kb on + strand, within OH686_23745at 4810.867 kb on + strand, within OH686_23745at 4810.867 kb on + strand, within OH686_23745at 4810.908 kb on + strand, within OH686_23745at 4810.908 kb on + strand, within OH686_23745at 4810.908 kb on + strand, within OH686_23745at 4810.908 kb on + strand, within OH686_23745at 4810.908 kb on + strand, within OH686_23745at 4810.909 kb on - strand, within OH686_23745at 4810.909 kb on - strand, within OH686_23745at 4810.909 kb on - strand, within OH686_23745at 4810.909 kb on - strand, within OH686_23745at 4810.959 kb on + strand, within OH686_23745at 4810.959 kb on + strand, within OH686_23745at 4810.959 kb on + strand, within OH686_23745at 4811.170 kb on + strand, within OH686_23750at 4811.170 kb on + strand, within OH686_23750at 4811.171 kb on - strand, within OH686_23750at 4811.206 kb on + strand, within OH686_23750at 4811.206 kb on + strand, within OH686_23750at 4811.206 kb on + strand, within OH686_23750at 4811.206 kb on + strand, within OH686_23750at 4811.206 kb on + strand, within OH686_23750at 4811.207 kb on - strand, within OH686_23750at 4811.259 kb on + strand, within OH686_23750at 4811.259 kb on + strand, within OH686_23750at 4811.260 kb on - strand, within OH686_23750at 4811.369 kb on + strandat 4811.369 kb on + strandat 4811.369 kb on + strandat 4811.369 kb on + strandat 4811.369 kb on + strandat 4811.369 kb on + strandat 4811.369 kb on + strandat 4811.369 kb on + strandat 4811.370 kb on - strandat 4811.370 kb on - strandat 4811.401 kb on + strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.402 kb on - strandat 4811.419 kb on + strandat 4811.420 kb on - strandat 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.854 kb on + strand, within OH686_23755at 4811.855 kb on - strand, within OH686_23755at 4811.855 kb on - strand, within OH686_23755at 4811.855 kb on - strand, within OH686_23755at 4811.855 kb on - strand, within OH686_23755at 4811.855 kb on - strand, within OH686_23755at 4811.855 kb on - strand, within OH686_23755at 4811.857 kb on + strand, within OH686_23755at 4811.858 kb on - strand, within OH686_23755at 4811.858 kb on - strand, within OH686_23755at 4812.231 kb on + strandat 4812.231 kb on + strandat 4812.232 kb on - strandat 4812.232 kb on - strandat 4812.232 kb on - strandat 4812.266 kb on + strandat 4812.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,810,023 + OH686_23740 0.38 -1.2
4,810,023 + OH686_23740 0.38 -1.1
4,810,023 + OH686_23740 0.38 +0.1
4,810,023 + OH686_23740 0.38 +0.5
4,810,023 + OH686_23740 0.38 +0.8
4,810,023 + OH686_23740 0.38 +0.7
4,810,023 + OH686_23740 0.38 -1.1
4,810,023 + OH686_23740 0.38 +0.2
4,810,033 + OH686_23740 0.39 +0.3
4,810,033 + OH686_23740 0.39 -1.1
4,810,283 + OH686_23740 0.64 -0.3
4,810,283 + OH686_23740 0.64 +0.4
4,810,287 + OH686_23740 0.65 +1.8
4,810,288 - OH686_23740 0.65 -1.1
4,810,352 + OH686_23740 0.71 -0.0
4,810,352 + OH686_23740 0.71 -1.1
4,810,352 + OH686_23740 0.71 -1.4
4,810,353 - OH686_23740 0.72 -0.6
4,810,436 + OH686_23740 0.80 -0.5
4,810,437 - OH686_23740 0.80 +0.2
4,810,437 - OH686_23740 0.80 +0.8
4,810,437 - OH686_23740 0.80 -1.2
4,810,437 - OH686_23740 0.80 +0.8
4,810,439 + OH686_23740 0.80 +0.3
4,810,439 + OH686_23740 0.80 +0.4
4,810,439 + OH686_23740 0.80 -0.2
4,810,439 + OH686_23740 0.80 +0.2
4,810,439 + OH686_23740 0.80 -0.2
4,810,439 + OH686_23740 0.80 +0.0
4,810,440 - OH686_23740 0.81 +0.5
4,810,641 + +0.9
4,810,641 + +0.2
4,810,641 + -0.4
4,810,641 + -0.4
4,810,642 - +0.4
4,810,642 - +0.9
4,810,642 - -0.1
4,810,725 + OH686_23745 0.25 -0.2
4,810,742 + OH686_23745 0.29 +0.6
4,810,742 + OH686_23745 0.29 +0.3
4,810,742 + OH686_23745 0.29 +1.3
4,810,742 + OH686_23745 0.29 -0.8
4,810,742 + OH686_23745 0.29 -1.2
4,810,742 + OH686_23745 0.29 +0.2
4,810,742 + OH686_23745 0.29 -0.6
4,810,743 - OH686_23745 0.30 +0.0
4,810,743 - OH686_23745 0.30 +0.2
4,810,743 - OH686_23745 0.30 -0.3
4,810,743 - OH686_23745 0.30 -0.2
4,810,744 + OH686_23745 0.30 -0.2
4,810,867 + OH686_23745 0.61 -0.5
4,810,867 + OH686_23745 0.61 -0.7
4,810,908 + OH686_23745 0.71 -0.5
4,810,908 + OH686_23745 0.71 +0.5
4,810,908 + OH686_23745 0.71 -0.7
4,810,908 + OH686_23745 0.71 +0.2
4,810,908 + OH686_23745 0.71 +0.2
4,810,909 - OH686_23745 0.71 +1.5
4,810,909 - OH686_23745 0.71 +0.3
4,810,909 - OH686_23745 0.71 -0.2
4,810,909 - OH686_23745 0.71 +0.5
4,810,959 + OH686_23745 0.84 -0.4
4,810,959 + OH686_23745 0.84 -0.6
4,810,959 + OH686_23745 0.84 -0.6
4,811,170 + OH686_23750 0.44 +0.9
4,811,170 + OH686_23750 0.44 +0.1
4,811,171 - OH686_23750 0.44 -0.6
4,811,206 + OH686_23750 0.52 -1.1
4,811,206 + OH686_23750 0.52 +2.0
4,811,206 + OH686_23750 0.52 +1.0
4,811,206 + OH686_23750 0.52 +0.8
4,811,206 + OH686_23750 0.52 +0.6
4,811,207 - OH686_23750 0.53 -1.2
4,811,259 + OH686_23750 0.65 -0.7
4,811,259 + OH686_23750 0.65 +0.7
4,811,260 - OH686_23750 0.65 +0.5
4,811,369 + -0.5
4,811,369 + -0.6
4,811,369 + -1.7
4,811,369 + -1.0
4,811,369 + +0.3
4,811,369 + -1.4
4,811,369 + +0.2
4,811,369 + +0.2
4,811,370 - -0.8
4,811,370 - -0.2
4,811,401 + -0.5
4,811,402 - +2.0
4,811,402 - +1.8
4,811,402 - -0.6
4,811,402 - -0.2
4,811,402 - -0.7
4,811,402 - -0.2
4,811,402 - +0.1
4,811,402 - -0.1
4,811,402 - -0.4
4,811,402 - -0.2
4,811,419 + +0.2
4,811,420 - +0.3
4,811,854 + OH686_23755 0.52 +0.1
4,811,854 + OH686_23755 0.52 -0.5
4,811,854 + OH686_23755 0.52 -0.1
4,811,854 + OH686_23755 0.52 +1.0
4,811,854 + OH686_23755 0.52 -0.8
4,811,854 + OH686_23755 0.52 -0.5
4,811,854 + OH686_23755 0.52 -0.2
4,811,854 + OH686_23755 0.52 +0.8
4,811,854 + OH686_23755 0.52 -0.2
4,811,854 + OH686_23755 0.52 +0.7
4,811,854 + OH686_23755 0.52 -0.8
4,811,855 - OH686_23755 0.52 +0.6
4,811,855 - OH686_23755 0.52 -0.9
4,811,855 - OH686_23755 0.52 -0.2
4,811,855 - OH686_23755 0.52 +0.7
4,811,855 - OH686_23755 0.52 -0.2
4,811,855 - OH686_23755 0.52 -0.1
4,811,857 + OH686_23755 0.52 +0.2
4,811,858 - OH686_23755 0.52 -0.4
4,811,858 - OH686_23755 0.52 -0.6
4,812,231 + -0.7
4,812,231 + -0.3
4,812,232 - -0.7
4,812,232 - -0.0
4,812,232 - -0.2
4,812,266 + -0.1
4,812,281 + +0.0

Or see this region's nucleotide sequence