Strain Fitness in Pseudomonas sp. S08-1 around OH686_23085

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23075 and OH686_23080 overlap by 4 nucleotidesOH686_23080 and OH686_23085 overlap by 4 nucleotidesOH686_23085 and OH686_23090 overlap by 4 nucleotidesOH686_23090 and OH686_23095 are separated by 12 nucleotides OH686_23075: OH686_23075 - Organosulfonate ABC transporter permease protein, at 4,681,280 to 4,682,059 _23075 OH686_23080: OH686_23080 - Organosulfonate ABC transporter ATP-binding protein, at 4,682,056 to 4,682,913 _23080 OH686_23085: OH686_23085 - HEAT repeat-containing protein, at 4,682,910 to 4,683,893 _23085 OH686_23090: OH686_23090 - hypothetical protein, at 4,683,890 to 4,684,165 _23090 OH686_23095: OH686_23095 - Transcriptional regulator, AraC family, at 4,684,178 to 4,685,158 _23095 Position (kb) 4682 4683 4684Strain fitness (log2 ratio) -2 -1 0 1at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.910 kb on + strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.911 kb on - strand, within OH686_23075at 4681.925 kb on + strand, within OH686_23075at 4681.925 kb on + strand, within OH686_23075at 4681.925 kb on + strand, within OH686_23075at 4681.925 kb on + strand, within OH686_23075at 4681.926 kb on - strand, within OH686_23075at 4681.926 kb on - strand, within OH686_23075at 4681.926 kb on - strand, within OH686_23075at 4681.926 kb on - strand, within OH686_23075at 4681.926 kb on - strand, within OH686_23075at 4681.926 kb on - strand, within OH686_23075at 4681.940 kb on + strand, within OH686_23075at 4681.941 kb on - strand, within OH686_23075at 4682.036 kb on + strandat 4682.037 kb on - strandat 4682.399 kb on + strand, within OH686_23080at 4682.399 kb on + strand, within OH686_23080at 4682.400 kb on - strand, within OH686_23080at 4682.400 kb on - strand, within OH686_23080at 4682.400 kb on - strand, within OH686_23080at 4682.400 kb on - strand, within OH686_23080at 4682.619 kb on + strand, within OH686_23080at 4682.649 kb on - strand, within OH686_23080at 4682.649 kb on - strand, within OH686_23080at 4682.802 kb on + strand, within OH686_23080at 4682.802 kb on + strand, within OH686_23080at 4682.803 kb on - strand, within OH686_23080at 4682.803 kb on - strand, within OH686_23080at 4682.909 kb on + strandat 4682.920 kb on + strandat 4682.920 kb on + strandat 4682.920 kb on + strandat 4682.921 kb on - strandat 4682.921 kb on - strandat 4682.921 kb on - strandat 4682.921 kb on - strandat 4682.921 kb on - strandat 4683.187 kb on + strand, within OH686_23085at 4683.187 kb on + strand, within OH686_23085at 4683.187 kb on + strand, within OH686_23085at 4683.187 kb on + strand, within OH686_23085at 4683.188 kb on - strand, within OH686_23085at 4683.188 kb on - strand, within OH686_23085at 4683.188 kb on - strand, within OH686_23085at 4683.645 kb on + strand, within OH686_23085at 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.841 kb on + strandat 4683.842 kb on - strandat 4683.842 kb on - strandat 4683.842 kb on - strandat 4683.842 kb on - strandat 4683.842 kb on - strandat 4683.842 kb on - strandat 4683.842 kb on - strandat 4683.842 kb on - strandat 4683.930 kb on + strand, within OH686_23090at 4683.930 kb on + strand, within OH686_23090at 4683.931 kb on - strand, within OH686_23090at 4683.931 kb on - strand, within OH686_23090at 4684.056 kb on + strand, within OH686_23090at 4684.056 kb on + strand, within OH686_23090at 4684.056 kb on + strand, within OH686_23090at 4684.057 kb on - strand, within OH686_23090at 4684.130 kb on + strand, within OH686_23090at 4684.130 kb on + strand, within OH686_23090at 4684.130 kb on + strand, within OH686_23090at 4684.131 kb on - strand, within OH686_23090at 4684.131 kb on - strand, within OH686_23090at 4684.131 kb on - strand, within OH686_23090at 4684.131 kb on - strand, within OH686_23090at 4684.131 kb on - strand, within OH686_23090at 4684.131 kb on - strand, within OH686_23090at 4684.142 kb on + strandat 4684.142 kb on + strandat 4684.142 kb on + strandat 4684.142 kb on + strandat 4684.143 kb on - strandat 4684.143 kb on - strandat 4684.143 kb on - strandat 4684.289 kb on + strand, within OH686_23095at 4684.289 kb on + strand, within OH686_23095at 4684.289 kb on + strand, within OH686_23095at 4684.289 kb on + strand, within OH686_23095at 4684.289 kb on + strand, within OH686_23095at 4684.289 kb on + strand, within OH686_23095at 4684.289 kb on + strand, within OH686_23095at 4684.289 kb on + strand, within OH686_23095at 4684.290 kb on - strand, within OH686_23095at 4684.290 kb on - strand, within OH686_23095at 4684.290 kb on - strand, within OH686_23095at 4684.290 kb on - strand, within OH686_23095at 4684.290 kb on - strand, within OH686_23095at 4684.383 kb on + strand, within OH686_23095at 4684.383 kb on + strand, within OH686_23095at 4684.383 kb on + strand, within OH686_23095at 4684.383 kb on + strand, within OH686_23095at 4684.384 kb on - strand, within OH686_23095at 4684.384 kb on - strand, within OH686_23095at 4684.384 kb on - strand, within OH686_23095at 4684.384 kb on - strand, within OH686_23095at 4684.384 kb on - strand, within OH686_23095at 4684.384 kb on - strand, within OH686_23095at 4684.384 kb on - strand, within OH686_23095at 4684.430 kb on + strand, within OH686_23095at 4684.430 kb on + strand, within OH686_23095at 4684.430 kb on + strand, within OH686_23095at 4684.431 kb on - strand, within OH686_23095at 4684.431 kb on - strand, within OH686_23095

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,681,910 + OH686_23075 0.81 +0.4
4,681,910 + OH686_23075 0.81 -0.4
4,681,910 + OH686_23075 0.81 -0.5
4,681,910 + OH686_23075 0.81 +0.0
4,681,910 + OH686_23075 0.81 -0.4
4,681,910 + OH686_23075 0.81 +0.5
4,681,910 + OH686_23075 0.81 -0.4
4,681,910 + OH686_23075 0.81 +0.8
4,681,910 + OH686_23075 0.81 -1.0
4,681,911 - OH686_23075 0.81 +0.1
4,681,911 - OH686_23075 0.81 +0.2
4,681,911 - OH686_23075 0.81 -0.3
4,681,911 - OH686_23075 0.81 -1.6
4,681,911 - OH686_23075 0.81 +0.7
4,681,911 - OH686_23075 0.81 -0.6
4,681,911 - OH686_23075 0.81 -0.7
4,681,911 - OH686_23075 0.81 -0.5
4,681,911 - OH686_23075 0.81 +0.6
4,681,911 - OH686_23075 0.81 -0.5
4,681,911 - OH686_23075 0.81 -0.2
4,681,911 - OH686_23075 0.81 +0.5
4,681,925 + OH686_23075 0.83 -0.2
4,681,925 + OH686_23075 0.83 +0.1
4,681,925 + OH686_23075 0.83 -0.6
4,681,925 + OH686_23075 0.83 -0.1
4,681,926 - OH686_23075 0.83 +0.3
4,681,926 - OH686_23075 0.83 -0.1
4,681,926 - OH686_23075 0.83 -0.2
4,681,926 - OH686_23075 0.83 -1.9
4,681,926 - OH686_23075 0.83 -0.9
4,681,926 - OH686_23075 0.83 +0.0
4,681,940 + OH686_23075 0.85 -1.0
4,681,941 - OH686_23075 0.85 +0.5
4,682,036 + +0.0
4,682,037 - +0.3
4,682,399 + OH686_23080 0.40 -0.0
4,682,399 + OH686_23080 0.40 -0.1
4,682,400 - OH686_23080 0.40 +0.3
4,682,400 - OH686_23080 0.40 +0.5
4,682,400 - OH686_23080 0.40 +0.4
4,682,400 - OH686_23080 0.40 +0.6
4,682,619 + OH686_23080 0.66 +0.9
4,682,649 - OH686_23080 0.69 -0.2
4,682,649 - OH686_23080 0.69 +0.4
4,682,802 + OH686_23080 0.87 -0.4
4,682,802 + OH686_23080 0.87 -0.5
4,682,803 - OH686_23080 0.87 -0.9
4,682,803 - OH686_23080 0.87 +0.0
4,682,909 + +0.6
4,682,920 + -0.1
4,682,920 + +0.6
4,682,920 + -0.7
4,682,921 - +0.6
4,682,921 - +0.6
4,682,921 - -0.2
4,682,921 - +0.1
4,682,921 - -0.3
4,683,187 + OH686_23085 0.28 +0.4
4,683,187 + OH686_23085 0.28 -0.2
4,683,187 + OH686_23085 0.28 +0.8
4,683,187 + OH686_23085 0.28 +0.2
4,683,188 - OH686_23085 0.28 +0.3
4,683,188 - OH686_23085 0.28 +0.5
4,683,188 - OH686_23085 0.28 +0.5
4,683,645 + OH686_23085 0.75 -2.2
4,683,841 + +0.2
4,683,841 + -0.2
4,683,841 + -0.2
4,683,841 + +1.6
4,683,841 + +0.3
4,683,841 + +0.2
4,683,841 + -1.9
4,683,841 + -0.1
4,683,841 + +1.2
4,683,841 + -0.2
4,683,841 + -0.1
4,683,841 + -0.6
4,683,841 + +0.9
4,683,842 - -0.1
4,683,842 - -2.5
4,683,842 - +0.2
4,683,842 - +0.6
4,683,842 - -1.1
4,683,842 - -0.7
4,683,842 - +0.5
4,683,842 - +0.4
4,683,930 + OH686_23090 0.14 -1.9
4,683,930 + OH686_23090 0.14 -1.9
4,683,931 - OH686_23090 0.15 +0.3
4,683,931 - OH686_23090 0.15 -0.6
4,684,056 + OH686_23090 0.60 -0.6
4,684,056 + OH686_23090 0.60 -1.1
4,684,056 + OH686_23090 0.60 -0.3
4,684,057 - OH686_23090 0.61 -1.0
4,684,130 + OH686_23090 0.87 -0.4
4,684,130 + OH686_23090 0.87 -1.5
4,684,130 + OH686_23090 0.87 +1.6
4,684,131 - OH686_23090 0.87 -0.2
4,684,131 - OH686_23090 0.87 -0.1
4,684,131 - OH686_23090 0.87 +0.3
4,684,131 - OH686_23090 0.87 -0.5
4,684,131 - OH686_23090 0.87 -0.1
4,684,131 - OH686_23090 0.87 +0.2
4,684,142 + -0.6
4,684,142 + +0.6
4,684,142 + +0.2
4,684,142 + +0.1
4,684,143 - +0.3
4,684,143 - +0.1
4,684,143 - +0.1
4,684,289 + OH686_23095 0.11 -0.5
4,684,289 + OH686_23095 0.11 -0.5
4,684,289 + OH686_23095 0.11 -0.0
4,684,289 + OH686_23095 0.11 +0.5
4,684,289 + OH686_23095 0.11 +0.8
4,684,289 + OH686_23095 0.11 -0.3
4,684,289 + OH686_23095 0.11 -0.1
4,684,289 + OH686_23095 0.11 -0.8
4,684,290 - OH686_23095 0.11 +0.2
4,684,290 - OH686_23095 0.11 +0.6
4,684,290 - OH686_23095 0.11 -0.8
4,684,290 - OH686_23095 0.11 -0.4
4,684,290 - OH686_23095 0.11 -0.3
4,684,383 + OH686_23095 0.21 +0.2
4,684,383 + OH686_23095 0.21 -0.2
4,684,383 + OH686_23095 0.21 +0.2
4,684,383 + OH686_23095 0.21 +1.1
4,684,384 - OH686_23095 0.21 -0.6
4,684,384 - OH686_23095 0.21 +1.6
4,684,384 - OH686_23095 0.21 +0.3
4,684,384 - OH686_23095 0.21 -0.6
4,684,384 - OH686_23095 0.21 -0.5
4,684,384 - OH686_23095 0.21 -0.0
4,684,384 - OH686_23095 0.21 -0.6
4,684,430 + OH686_23095 0.26 -0.7
4,684,430 + OH686_23095 0.26 +0.0
4,684,430 + OH686_23095 0.26 -0.3
4,684,431 - OH686_23095 0.26 +0.0
4,684,431 - OH686_23095 0.26 +0.5

Or see this region's nucleotide sequence