Strain Fitness in Pseudomonas sp. S08-1 around OH686_22530

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22525 and OH686_22530 are separated by 62 nucleotidesOH686_22530 and OH686_22535 overlap by 4 nucleotidesOH686_22535 and OH686_22540 are separated by 159 nucleotides OH686_22525: OH686_22525 - Monooxygenase, flavin-binding family, at 4,574,587 to 4,575,963 _22525 OH686_22530: OH686_22530 - Transcriptional regulator, AraC family, at 4,576,026 to 4,576,994 _22530 OH686_22535: OH686_22535 - Spermidine synthase-like protein, at 4,576,991 to 4,577,746 _22535 OH686_22540: OH686_22540 - CDS, at 4,577,906 to 4,578,064 _22540 Position (kb) 4576 4577Strain fitness (log2 ratio) -2 -1 0 1 2at 4575.032 kb on + strand, within OH686_22525at 4575.032 kb on + strand, within OH686_22525at 4575.033 kb on - strand, within OH686_22525at 4575.033 kb on - strand, within OH686_22525at 4575.087 kb on + strand, within OH686_22525at 4575.161 kb on + strand, within OH686_22525at 4575.161 kb on + strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.171 kb on - strand, within OH686_22525at 4575.191 kb on + strand, within OH686_22525at 4575.191 kb on + strand, within OH686_22525at 4575.238 kb on + strand, within OH686_22525at 4575.239 kb on - strand, within OH686_22525at 4575.239 kb on - strand, within OH686_22525at 4575.239 kb on - strand, within OH686_22525at 4575.282 kb on + strand, within OH686_22525at 4575.449 kb on + strand, within OH686_22525at 4575.449 kb on + strand, within OH686_22525at 4575.450 kb on - strand, within OH686_22525at 4575.450 kb on - strand, within OH686_22525at 4575.450 kb on - strand, within OH686_22525at 4575.638 kb on + strand, within OH686_22525at 4575.638 kb on + strand, within OH686_22525at 4575.639 kb on - strand, within OH686_22525at 4575.639 kb on - strand, within OH686_22525at 4575.668 kb on + strand, within OH686_22525at 4575.681 kb on - strand, within OH686_22525at 4575.681 kb on - strand, within OH686_22525at 4575.697 kb on - strand, within OH686_22525at 4575.786 kb on - strand, within OH686_22525at 4575.786 kb on - strand, within OH686_22525at 4575.948 kb on + strandat 4575.948 kb on + strandat 4575.963 kb on + strandat 4575.964 kb on - strandat 4575.964 kb on - strandat 4575.964 kb on - strandat 4576.056 kb on + strandat 4576.056 kb on + strandat 4576.057 kb on - strandat 4576.057 kb on - strandat 4576.139 kb on + strand, within OH686_22530at 4576.139 kb on + strand, within OH686_22530at 4576.139 kb on + strand, within OH686_22530at 4576.140 kb on - strand, within OH686_22530at 4576.311 kb on + strand, within OH686_22530at 4576.311 kb on + strand, within OH686_22530at 4576.311 kb on + strand, within OH686_22530at 4576.312 kb on - strand, within OH686_22530at 4576.312 kb on - strand, within OH686_22530at 4576.312 kb on - strand, within OH686_22530at 4576.312 kb on - strand, within OH686_22530at 4576.312 kb on - strand, within OH686_22530at 4576.312 kb on - strand, within OH686_22530at 4576.314 kb on + strand, within OH686_22530at 4576.314 kb on + strand, within OH686_22530at 4576.315 kb on - strand, within OH686_22530at 4576.381 kb on - strand, within OH686_22530at 4576.393 kb on - strand, within OH686_22530at 4576.489 kb on + strand, within OH686_22530at 4576.489 kb on + strand, within OH686_22530at 4576.489 kb on + strand, within OH686_22530at 4576.489 kb on + strand, within OH686_22530at 4576.489 kb on + strand, within OH686_22530at 4576.490 kb on - strand, within OH686_22530at 4576.490 kb on - strand, within OH686_22530at 4576.490 kb on - strand, within OH686_22530at 4576.490 kb on - strand, within OH686_22530at 4576.490 kb on - strand, within OH686_22530at 4576.490 kb on - strand, within OH686_22530at 4576.490 kb on - strand, within OH686_22530at 4576.527 kb on + strand, within OH686_22530at 4576.527 kb on + strand, within OH686_22530at 4576.527 kb on + strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.528 kb on - strand, within OH686_22530at 4576.843 kb on - strand, within OH686_22530at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.318 kb on + strand, within OH686_22535at 4577.318 kb on + strand, within OH686_22535at 4577.318 kb on + strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.421 kb on - strand, within OH686_22535at 4577.421 kb on - strand, within OH686_22535at 4577.421 kb on - strand, within OH686_22535at 4577.422 kb on + strand, within OH686_22535at 4577.423 kb on - strand, within OH686_22535at 4577.423 kb on - strand, within OH686_22535at 4577.583 kb on - strand, within OH686_22535at 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.754 kb on + strandat 4577.754 kb on + strandat 4577.754 kb on + strandat 4577.755 kb on - strandat 4577.755 kb on - strandat 4577.755 kb on - strandat 4577.755 kb on - strandat 4577.835 kb on - strandat 4577.835 kb on - strandat 4577.870 kb on + strandat 4577.870 kb on + strandat 4577.870 kb on + strandat 4577.871 kb on - strandat 4577.871 kb on - strandat 4577.945 kb on + strand, within OH686_22540at 4577.945 kb on + strand, within OH686_22540at 4577.946 kb on - strand, within OH686_22540at 4577.981 kb on - strand, within OH686_22540

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,575,032 + OH686_22525 0.32 -0.2
4,575,032 + OH686_22525 0.32 -1.2
4,575,033 - OH686_22525 0.32 +1.2
4,575,033 - OH686_22525 0.32 -0.0
4,575,087 + OH686_22525 0.36 -0.7
4,575,161 + OH686_22525 0.42 -0.1
4,575,161 + OH686_22525 0.42 -0.3
4,575,162 - OH686_22525 0.42 +0.6
4,575,162 - OH686_22525 0.42 +0.2
4,575,162 - OH686_22525 0.42 +0.3
4,575,162 - OH686_22525 0.42 +0.7
4,575,162 - OH686_22525 0.42 +0.2
4,575,171 - OH686_22525 0.42 -0.8
4,575,191 + OH686_22525 0.44 -0.3
4,575,191 + OH686_22525 0.44 -0.3
4,575,238 + OH686_22525 0.47 -0.6
4,575,239 - OH686_22525 0.47 -2.2
4,575,239 - OH686_22525 0.47 -0.2
4,575,239 - OH686_22525 0.47 +0.3
4,575,282 + OH686_22525 0.50 -1.4
4,575,449 + OH686_22525 0.63 -0.2
4,575,449 + OH686_22525 0.63 +0.5
4,575,450 - OH686_22525 0.63 +0.3
4,575,450 - OH686_22525 0.63 -0.8
4,575,450 - OH686_22525 0.63 +1.0
4,575,638 + OH686_22525 0.76 +0.3
4,575,638 + OH686_22525 0.76 +0.6
4,575,639 - OH686_22525 0.76 +0.5
4,575,639 - OH686_22525 0.76 -0.3
4,575,668 + OH686_22525 0.79 -0.6
4,575,681 - OH686_22525 0.79 +0.1
4,575,681 - OH686_22525 0.79 -1.8
4,575,697 - OH686_22525 0.81 -0.3
4,575,786 - OH686_22525 0.87 -0.5
4,575,786 - OH686_22525 0.87 -0.8
4,575,948 + -0.4
4,575,948 + +1.1
4,575,963 + +0.1
4,575,964 - -0.3
4,575,964 - +0.2
4,575,964 - -0.8
4,576,056 + -0.2
4,576,056 + +0.3
4,576,057 - -0.8
4,576,057 - +0.5
4,576,139 + OH686_22530 0.12 +1.2
4,576,139 + OH686_22530 0.12 -0.8
4,576,139 + OH686_22530 0.12 -0.2
4,576,140 - OH686_22530 0.12 -0.1
4,576,311 + OH686_22530 0.29 +0.2
4,576,311 + OH686_22530 0.29 +0.0
4,576,311 + OH686_22530 0.29 +1.3
4,576,312 - OH686_22530 0.30 +0.4
4,576,312 - OH686_22530 0.30 +0.4
4,576,312 - OH686_22530 0.30 -1.3
4,576,312 - OH686_22530 0.30 +0.1
4,576,312 - OH686_22530 0.30 +0.2
4,576,312 - OH686_22530 0.30 -0.3
4,576,314 + OH686_22530 0.30 -0.3
4,576,314 + OH686_22530 0.30 -0.1
4,576,315 - OH686_22530 0.30 +0.5
4,576,381 - OH686_22530 0.37 +0.2
4,576,393 - OH686_22530 0.38 +0.2
4,576,489 + OH686_22530 0.48 +0.6
4,576,489 + OH686_22530 0.48 -1.4
4,576,489 + OH686_22530 0.48 +1.3
4,576,489 + OH686_22530 0.48 -1.1
4,576,489 + OH686_22530 0.48 +0.0
4,576,490 - OH686_22530 0.48 +1.6
4,576,490 - OH686_22530 0.48 -0.8
4,576,490 - OH686_22530 0.48 -0.2
4,576,490 - OH686_22530 0.48 -0.5
4,576,490 - OH686_22530 0.48 -0.4
4,576,490 - OH686_22530 0.48 -1.1
4,576,490 - OH686_22530 0.48 +1.7
4,576,527 + OH686_22530 0.52 -0.7
4,576,527 + OH686_22530 0.52 -0.3
4,576,527 + OH686_22530 0.52 +0.4
4,576,528 - OH686_22530 0.52 +1.5
4,576,528 - OH686_22530 0.52 +0.6
4,576,528 - OH686_22530 0.52 -0.2
4,576,528 - OH686_22530 0.52 +0.4
4,576,528 - OH686_22530 0.52 +0.7
4,576,528 - OH686_22530 0.52 +0.9
4,576,528 - OH686_22530 0.52 +0.6
4,576,528 - OH686_22530 0.52 -0.4
4,576,528 - OH686_22530 0.52 +0.5
4,576,528 - OH686_22530 0.52 -0.8
4,576,843 - OH686_22530 0.84 -0.5
4,577,117 + OH686_22535 0.17 +0.3
4,577,117 + OH686_22535 0.17 -0.6
4,577,117 + OH686_22535 0.17 -0.9
4,577,117 + OH686_22535 0.17 +1.4
4,577,117 + OH686_22535 0.17 -0.3
4,577,117 + OH686_22535 0.17 -0.3
4,577,117 + OH686_22535 0.17 +2.4
4,577,117 + OH686_22535 0.17 +0.7
4,577,117 + OH686_22535 0.17 +0.4
4,577,117 + OH686_22535 0.17 -0.6
4,577,117 + OH686_22535 0.17 -1.6
4,577,117 + OH686_22535 0.17 +1.2
4,577,117 + OH686_22535 0.17 +0.1
4,577,118 - OH686_22535 0.17 -0.4
4,577,118 - OH686_22535 0.17 +0.6
4,577,118 - OH686_22535 0.17 -0.1
4,577,118 - OH686_22535 0.17 -0.1
4,577,118 - OH686_22535 0.17 +1.3
4,577,118 - OH686_22535 0.17 -0.5
4,577,118 - OH686_22535 0.17 -0.3
4,577,118 - OH686_22535 0.17 +0.3
4,577,118 - OH686_22535 0.17 -0.1
4,577,118 - OH686_22535 0.17 +0.2
4,577,118 - OH686_22535 0.17 +0.4
4,577,118 - OH686_22535 0.17 +0.4
4,577,118 - OH686_22535 0.17 -0.2
4,577,118 - OH686_22535 0.17 -0.4
4,577,118 - OH686_22535 0.17 +0.5
4,577,118 - OH686_22535 0.17 +0.2
4,577,118 - OH686_22535 0.17 +0.0
4,577,118 - OH686_22535 0.17 +0.1
4,577,118 - OH686_22535 0.17 -1.7
4,577,145 - OH686_22535 0.20 -0.0
4,577,145 - OH686_22535 0.20 -0.3
4,577,145 - OH686_22535 0.20 +0.8
4,577,145 - OH686_22535 0.20 +0.4
4,577,150 + OH686_22535 0.21 +0.7
4,577,150 + OH686_22535 0.21 -0.3
4,577,150 + OH686_22535 0.21 -0.2
4,577,150 + OH686_22535 0.21 +0.1
4,577,150 + OH686_22535 0.21 -1.3
4,577,150 + OH686_22535 0.21 -0.6
4,577,151 - OH686_22535 0.21 -0.4
4,577,151 - OH686_22535 0.21 -0.5
4,577,151 - OH686_22535 0.21 +0.5
4,577,151 - OH686_22535 0.21 -0.1
4,577,151 - OH686_22535 0.21 -0.3
4,577,151 - OH686_22535 0.21 -0.5
4,577,318 + OH686_22535 0.43 -1.7
4,577,318 + OH686_22535 0.43 -1.0
4,577,318 + OH686_22535 0.43 +0.5
4,577,319 - OH686_22535 0.43 +0.1
4,577,319 - OH686_22535 0.43 -0.8
4,577,319 - OH686_22535 0.43 +0.6
4,577,319 - OH686_22535 0.43 +0.5
4,577,420 + OH686_22535 0.57 +0.2
4,577,420 + OH686_22535 0.57 -0.1
4,577,420 + OH686_22535 0.57 +0.0
4,577,420 + OH686_22535 0.57 +1.5
4,577,420 + OH686_22535 0.57 +0.4
4,577,420 + OH686_22535 0.57 +0.5
4,577,420 + OH686_22535 0.57 +0.2
4,577,420 + OH686_22535 0.57 -1.4
4,577,420 + OH686_22535 0.57 -0.9
4,577,420 + OH686_22535 0.57 +0.4
4,577,420 + OH686_22535 0.57 -2.2
4,577,421 - OH686_22535 0.57 +0.1
4,577,421 - OH686_22535 0.57 -0.1
4,577,421 - OH686_22535 0.57 -0.3
4,577,422 + OH686_22535 0.57 -0.3
4,577,423 - OH686_22535 0.57 -1.1
4,577,423 - OH686_22535 0.57 -0.0
4,577,583 - OH686_22535 0.78 +2.2
4,577,730 + +0.2
4,577,730 + +0.1
4,577,730 + +2.0
4,577,730 + +1.2
4,577,730 + -1.1
4,577,730 + +0.6
4,577,730 + -0.3
4,577,730 + -0.1
4,577,730 + +0.5
4,577,730 + +0.6
4,577,731 - +0.7
4,577,731 - +0.8
4,577,731 - +1.3
4,577,731 - +0.0
4,577,731 - -1.7
4,577,731 - -0.4
4,577,731 - -0.3
4,577,731 - +0.6
4,577,731 - +0.1
4,577,731 - -0.2
4,577,731 - -0.6
4,577,754 + +0.5
4,577,754 + -0.1
4,577,754 + -0.2
4,577,755 - -0.6
4,577,755 - +0.6
4,577,755 - +0.5
4,577,755 - +0.0
4,577,835 - -0.3
4,577,835 - -0.7
4,577,870 + +0.4
4,577,870 + +0.1
4,577,870 + +1.1
4,577,871 - -1.1
4,577,871 - +0.4
4,577,945 + OH686_22540 0.25 -0.2
4,577,945 + OH686_22540 0.25 +0.3
4,577,946 - OH686_22540 0.25 +0.1
4,577,981 - OH686_22540 0.47 +1.4

Or see this region's nucleotide sequence