Strain Fitness in Pseudomonas sp. S08-1 around OH686_22010

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_22005 and OH686_22010 are separated by 158 nucleotidesOH686_22010 and OH686_22015 overlap by 4 nucleotidesOH686_22015 and OH686_22020 overlap by 1 nucleotidesOH686_22020 and OH686_22025 are separated by 98 nucleotides OH686_22005: OH686_22005 - Soluble pyridine nucleotide transhydrogenase , at 4,483,925 to 4,485,319 _22005 OH686_22010: OH686_22010 - Glycerophosphoryl diester phosphodiesterase , at 4,485,478 to 4,486,197 _22010 OH686_22015: OH686_22015 - hypothetical protein, at 4,486,194 to 4,486,490 _22015 OH686_22020: OH686_22020 - hypothetical protein, at 4,486,490 to 4,487,062 _22020 OH686_22025: OH686_22025 - Lipoprotein releasing system transmembrane protein LolC/LolE, at 4,487,161 to 4,488,417 _22025 Position (kb) 4485 4486 4487Strain fitness (log2 ratio) -3 -2 -1 0 1at 4484.492 kb on + strand, within OH686_22005at 4484.557 kb on + strand, within OH686_22005at 4484.557 kb on + strand, within OH686_22005at 4484.557 kb on + strand, within OH686_22005at 4484.557 kb on + strand, within OH686_22005at 4484.557 kb on + strand, within OH686_22005at 4484.557 kb on + strand, within OH686_22005at 4484.557 kb on + strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.558 kb on - strand, within OH686_22005at 4484.594 kb on + strand, within OH686_22005at 4484.594 kb on + strand, within OH686_22005at 4484.594 kb on + strand, within OH686_22005at 4484.595 kb on - strand, within OH686_22005at 4484.595 kb on - strand, within OH686_22005at 4484.611 kb on + strand, within OH686_22005at 4484.612 kb on - strand, within OH686_22005at 4484.639 kb on + strand, within OH686_22005at 4484.639 kb on + strand, within OH686_22005at 4484.639 kb on + strand, within OH686_22005at 4484.816 kb on + strand, within OH686_22005at 4484.817 kb on - strand, within OH686_22005at 4484.889 kb on - strand, within OH686_22005at 4484.889 kb on - strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.969 kb on + strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4484.970 kb on - strand, within OH686_22005at 4485.114 kb on + strand, within OH686_22005at 4485.114 kb on + strand, within OH686_22005at 4485.114 kb on + strand, within OH686_22005at 4485.115 kb on - strand, within OH686_22005at 4485.115 kb on - strand, within OH686_22005at 4485.226 kb on + strandat 4485.226 kb on + strandat 4485.226 kb on + strandat 4485.227 kb on - strandat 4485.227 kb on - strandat 4485.233 kb on + strandat 4485.233 kb on + strandat 4485.233 kb on + strandat 4485.233 kb on + strandat 4485.233 kb on + strandat 4485.233 kb on + strandat 4485.234 kb on - strandat 4485.257 kb on + strandat 4485.258 kb on - strandat 4485.486 kb on + strandat 4485.487 kb on - strandat 4485.492 kb on + strandat 4485.525 kb on + strandat 4485.525 kb on + strandat 4485.525 kb on + strandat 4485.525 kb on + strandat 4485.525 kb on + strandat 4485.525 kb on + strandat 4485.525 kb on + strandat 4485.526 kb on - strandat 4485.526 kb on - strandat 4485.526 kb on - strandat 4485.526 kb on - strandat 4485.526 kb on - strandat 4485.526 kb on - strandat 4485.707 kb on + strand, within OH686_22010at 4485.707 kb on + strand, within OH686_22010at 4485.708 kb on - strand, within OH686_22010at 4485.731 kb on - strand, within OH686_22010at 4485.763 kb on + strand, within OH686_22010at 4485.764 kb on - strand, within OH686_22010at 4485.764 kb on - strand, within OH686_22010at 4485.764 kb on - strand, within OH686_22010at 4485.913 kb on + strand, within OH686_22010at 4485.914 kb on - strand, within OH686_22010at 4486.184 kb on + strandat 4486.184 kb on + strandat 4486.185 kb on - strandat 4486.185 kb on - strandat 4486.185 kb on - strandat 4486.185 kb on - strandat 4486.258 kb on + strand, within OH686_22015at 4486.258 kb on + strand, within OH686_22015at 4486.267 kb on + strand, within OH686_22015at 4486.267 kb on + strand, within OH686_22015at 4486.268 kb on - strand, within OH686_22015at 4486.837 kb on + strand, within OH686_22020at 4486.837 kb on + strand, within OH686_22020at 4486.837 kb on + strand, within OH686_22020at 4486.837 kb on + strand, within OH686_22020at 4486.838 kb on - strand, within OH686_22020at 4486.838 kb on - strand, within OH686_22020at 4486.842 kb on + strand, within OH686_22020at 4486.842 kb on + strand, within OH686_22020at 4486.842 kb on + strand, within OH686_22020at 4486.842 kb on + strand, within OH686_22020at 4486.842 kb on + strand, within OH686_22020at 4486.842 kb on + strand, within OH686_22020at 4486.842 kb on + strand, within OH686_22020at 4486.843 kb on - strand, within OH686_22020at 4486.843 kb on - strand, within OH686_22020at 4486.843 kb on - strand, within OH686_22020at 4486.843 kb on - strand, within OH686_22020at 4486.843 kb on - strand, within OH686_22020at 4486.843 kb on - strand, within OH686_22020at 4486.873 kb on + strand, within OH686_22020at 4486.873 kb on + strand, within OH686_22020at 4486.873 kb on + strand, within OH686_22020at 4486.874 kb on - strand, within OH686_22020at 4486.945 kb on + strand, within OH686_22020at 4487.025 kb on + strandat 4487.025 kb on + strandat 4487.025 kb on + strandat 4487.028 kb on + strandat 4487.028 kb on + strandat 4487.028 kb on + strandat 4487.028 kb on + strandat 4487.028 kb on + strandat 4487.028 kb on + strandat 4487.029 kb on - strandat 4487.096 kb on + strandat 4487.096 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
4,484,492 + OH686_22005 0.41 -0.6
4,484,557 + OH686_22005 0.45 -0.6
4,484,557 + OH686_22005 0.45 -0.1
4,484,557 + OH686_22005 0.45 -1.2
4,484,557 + OH686_22005 0.45 -0.3
4,484,557 + OH686_22005 0.45 -1.7
4,484,557 + OH686_22005 0.45 -0.6
4,484,557 + OH686_22005 0.45 -1.6
4,484,558 - OH686_22005 0.45 -1.3
4,484,558 - OH686_22005 0.45 -0.3
4,484,558 - OH686_22005 0.45 -0.8
4,484,558 - OH686_22005 0.45 -1.6
4,484,558 - OH686_22005 0.45 -0.3
4,484,558 - OH686_22005 0.45 -0.6
4,484,558 - OH686_22005 0.45 -3.1
4,484,558 - OH686_22005 0.45 -2.7
4,484,558 - OH686_22005 0.45 -2.3
4,484,558 - OH686_22005 0.45 +0.4
4,484,558 - OH686_22005 0.45 -2.4
4,484,558 - OH686_22005 0.45 -1.5
4,484,558 - OH686_22005 0.45 -2.8
4,484,594 + OH686_22005 0.48 -2.9
4,484,594 + OH686_22005 0.48 -2.0
4,484,594 + OH686_22005 0.48 -0.6
4,484,595 - OH686_22005 0.48 -0.0
4,484,595 - OH686_22005 0.48 -3.5
4,484,611 + OH686_22005 0.49 -1.7
4,484,612 - OH686_22005 0.49 -2.5
4,484,639 + OH686_22005 0.51 -1.7
4,484,639 + OH686_22005 0.51 -0.3
4,484,639 + OH686_22005 0.51 -2.3
4,484,816 + OH686_22005 0.64 -1.8
4,484,817 - OH686_22005 0.64 -2.5
4,484,889 - OH686_22005 0.69 -2.4
4,484,889 - OH686_22005 0.69 -2.2
4,484,969 + OH686_22005 0.75 -2.3
4,484,969 + OH686_22005 0.75 -3.0
4,484,969 + OH686_22005 0.75 +0.0
4,484,969 + OH686_22005 0.75 -1.3
4,484,969 + OH686_22005 0.75 -0.3
4,484,969 + OH686_22005 0.75 -1.2
4,484,969 + OH686_22005 0.75 -0.1
4,484,969 + OH686_22005 0.75 -0.8
4,484,970 - OH686_22005 0.75 -0.3
4,484,970 - OH686_22005 0.75 -1.7
4,484,970 - OH686_22005 0.75 -1.6
4,484,970 - OH686_22005 0.75 -0.6
4,484,970 - OH686_22005 0.75 -1.8
4,484,970 - OH686_22005 0.75 -1.4
4,484,970 - OH686_22005 0.75 -3.4
4,484,970 - OH686_22005 0.75 -1.3
4,484,970 - OH686_22005 0.75 -0.8
4,484,970 - OH686_22005 0.75 -1.7
4,484,970 - OH686_22005 0.75 -1.1
4,485,114 + OH686_22005 0.85 -1.0
4,485,114 + OH686_22005 0.85 -1.3
4,485,114 + OH686_22005 0.85 -1.3
4,485,115 - OH686_22005 0.85 -3.1
4,485,115 - OH686_22005 0.85 -0.8
4,485,226 + -0.3
4,485,226 + -1.3
4,485,226 + -0.3
4,485,227 - -0.1
4,485,227 - -0.6
4,485,233 + -1.1
4,485,233 + +0.5
4,485,233 + -0.8
4,485,233 + +0.2
4,485,233 + -1.6
4,485,233 + -1.4
4,485,234 - -2.1
4,485,257 + -2.1
4,485,258 - -0.6
4,485,486 + -1.0
4,485,487 - -0.6
4,485,492 + -0.5
4,485,525 + -0.7
4,485,525 + -0.1
4,485,525 + -1.1
4,485,525 + -0.3
4,485,525 + -0.2
4,485,525 + -0.6
4,485,525 + +1.1
4,485,526 - -0.2
4,485,526 - +0.1
4,485,526 - -0.8
4,485,526 - -0.1
4,485,526 - +0.4
4,485,526 - -0.3
4,485,707 + OH686_22010 0.32 +0.2
4,485,707 + OH686_22010 0.32 +0.0
4,485,708 - OH686_22010 0.32 +0.4
4,485,731 - OH686_22010 0.35 -0.6
4,485,763 + OH686_22010 0.40 +1.3
4,485,764 - OH686_22010 0.40 -0.0
4,485,764 - OH686_22010 0.40 +0.4
4,485,764 - OH686_22010 0.40 +0.0
4,485,913 + OH686_22010 0.60 -0.1
4,485,914 - OH686_22010 0.61 +1.1
4,486,184 + -0.4
4,486,184 + -0.9
4,486,185 - +0.7
4,486,185 - +0.5
4,486,185 - -1.3
4,486,185 - -0.3
4,486,258 + OH686_22015 0.22 +0.1
4,486,258 + OH686_22015 0.22 -0.8
4,486,267 + OH686_22015 0.25 -0.3
4,486,267 + OH686_22015 0.25 +0.3
4,486,268 - OH686_22015 0.25 -0.1
4,486,837 + OH686_22020 0.61 +0.7
4,486,837 + OH686_22020 0.61 +0.9
4,486,837 + OH686_22020 0.61 -0.3
4,486,837 + OH686_22020 0.61 -0.3
4,486,838 - OH686_22020 0.61 -0.8
4,486,838 - OH686_22020 0.61 +1.3
4,486,842 + OH686_22020 0.61 -0.3
4,486,842 + OH686_22020 0.61 +0.4
4,486,842 + OH686_22020 0.61 +0.6
4,486,842 + OH686_22020 0.61 -0.0
4,486,842 + OH686_22020 0.61 -0.3
4,486,842 + OH686_22020 0.61 -1.0
4,486,842 + OH686_22020 0.61 -1.7
4,486,843 - OH686_22020 0.62 +0.2
4,486,843 - OH686_22020 0.62 +0.7
4,486,843 - OH686_22020 0.62 -0.6
4,486,843 - OH686_22020 0.62 +0.1
4,486,843 - OH686_22020 0.62 +0.1
4,486,843 - OH686_22020 0.62 -0.4
4,486,873 + OH686_22020 0.67 -0.6
4,486,873 + OH686_22020 0.67 -0.1
4,486,873 + OH686_22020 0.67 +0.3
4,486,874 - OH686_22020 0.67 -0.8
4,486,945 + OH686_22020 0.79 -0.3
4,487,025 + -0.9
4,487,025 + +0.0
4,487,025 + +0.6
4,487,028 + +0.7
4,487,028 + -0.4
4,487,028 + -0.6
4,487,028 + +0.3
4,487,028 + -0.6
4,487,028 + -1.3
4,487,029 - +0.7
4,487,096 + -0.7
4,487,096 + +0.3

Or see this region's nucleotide sequence