Strain Fitness in Pseudomonas sp. S08-1 around OH686_21700

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21695 and OH686_21700 overlap by 16 nucleotidesOH686_21700 and OH686_21705 are separated by 10 nucleotidesOH686_21705 and OH686_21710 are separated by 3 nucleotides OH686_21695: OH686_21695 - hypothetical protein, at 4,415,687 to 4,416,886 _21695 OH686_21700: OH686_21700 - hypothetical protein, at 4,416,871 to 4,417,383 _21700 OH686_21705: OH686_21705 - hypothetical protein, at 4,417,394 to 4,417,843 _21705 OH686_21710: OH686_21710 - hypothetical protein, at 4,417,847 to 4,419,703 _21710 Position (kb) 4416 4417 4418Strain fitness (log2 ratio) -2 -1 0 1 2at 4415.915 kb on + strand, within OH686_21695at 4415.916 kb on - strand, within OH686_21695at 4415.916 kb on - strand, within OH686_21695at 4416.002 kb on + strand, within OH686_21695at 4416.002 kb on + strand, within OH686_21695at 4416.003 kb on - strand, within OH686_21695at 4416.120 kb on - strand, within OH686_21695at 4416.120 kb on - strand, within OH686_21695at 4416.242 kb on + strand, within OH686_21695at 4416.242 kb on + strand, within OH686_21695at 4416.243 kb on - strand, within OH686_21695at 4416.243 kb on - strand, within OH686_21695at 4416.243 kb on - strand, within OH686_21695at 4416.272 kb on + strand, within OH686_21695at 4416.273 kb on - strand, within OH686_21695at 4416.283 kb on + strand, within OH686_21695at 4416.314 kb on + strand, within OH686_21695at 4416.314 kb on + strand, within OH686_21695at 4416.314 kb on + strand, within OH686_21695at 4416.314 kb on + strand, within OH686_21695at 4416.314 kb on + strand, within OH686_21695at 4416.315 kb on - strand, within OH686_21695at 4416.315 kb on - strand, within OH686_21695at 4416.315 kb on - strand, within OH686_21695at 4416.422 kb on + strand, within OH686_21695at 4416.429 kb on - strand, within OH686_21695at 4416.554 kb on + strand, within OH686_21695at 4416.554 kb on + strand, within OH686_21695at 4416.554 kb on + strand, within OH686_21695at 4416.554 kb on + strand, within OH686_21695at 4416.555 kb on - strand, within OH686_21695at 4416.555 kb on - strand, within OH686_21695at 4416.555 kb on - strand, within OH686_21695at 4416.555 kb on - strand, within OH686_21695at 4416.728 kb on + strand, within OH686_21695at 4416.728 kb on + strand, within OH686_21695at 4416.728 kb on + strand, within OH686_21695at 4416.729 kb on - strand, within OH686_21695at 4416.729 kb on - strand, within OH686_21695at 4416.729 kb on - strand, within OH686_21695at 4416.729 kb on - strand, within OH686_21695at 4416.729 kb on - strand, within OH686_21695at 4416.880 kb on + strandat 4416.881 kb on - strandat 4417.036 kb on + strand, within OH686_21700at 4417.037 kb on - strand, within OH686_21700at 4417.037 kb on - strand, within OH686_21700at 4417.037 kb on - strand, within OH686_21700at 4417.046 kb on + strand, within OH686_21700at 4417.123 kb on + strand, within OH686_21700at 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.360 kb on + strandat 4417.361 kb on - strandat 4417.361 kb on - strandat 4417.361 kb on - strandat 4417.399 kb on + strandat 4417.399 kb on + strandat 4417.400 kb on - strandat 4417.481 kb on + strand, within OH686_21705at 4417.481 kb on + strand, within OH686_21705at 4417.481 kb on + strand, within OH686_21705at 4417.482 kb on - strand, within OH686_21705at 4417.482 kb on - strand, within OH686_21705at 4417.482 kb on - strand, within OH686_21705at 4417.482 kb on - strand, within OH686_21705at 4417.705 kb on + strand, within OH686_21705at 4417.705 kb on + strand, within OH686_21705at 4417.705 kb on + strand, within OH686_21705at 4417.706 kb on - strand, within OH686_21705at 4417.706 kb on - strand, within OH686_21705at 4417.706 kb on - strand, within OH686_21705at 4417.706 kb on - strand, within OH686_21705at 4417.805 kb on + strandat 4417.806 kb on - strandat 4417.881 kb on - strandat 4417.919 kb on + strandat 4417.920 kb on - strandat 4417.925 kb on + strandat 4417.925 kb on + strandat 4417.926 kb on - strandat 4417.926 kb on - strandat 4417.926 kb on - strandat 4418.021 kb on + strandat 4418.022 kb on - strandat 4418.033 kb on - strand, within OH686_21710at 4418.049 kb on - strand, within OH686_21710at 4418.108 kb on + strand, within OH686_21710at 4418.108 kb on + strand, within OH686_21710at 4418.108 kb on + strand, within OH686_21710at 4418.108 kb on + strand, within OH686_21710at 4418.108 kb on + strand, within OH686_21710at 4418.109 kb on - strand, within OH686_21710at 4418.109 kb on - strand, within OH686_21710at 4418.312 kb on + strand, within OH686_21710at 4418.312 kb on + strand, within OH686_21710at 4418.312 kb on + strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710at 4418.313 kb on - strand, within OH686_21710

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,415,915 + OH686_21695 0.19 +2.1
4,415,916 - OH686_21695 0.19 -0.1
4,415,916 - OH686_21695 0.19 -0.1
4,416,002 + OH686_21695 0.26 +1.1
4,416,002 + OH686_21695 0.26 +0.1
4,416,003 - OH686_21695 0.26 -1.4
4,416,120 - OH686_21695 0.36 +0.4
4,416,120 - OH686_21695 0.36 -0.4
4,416,242 + OH686_21695 0.46 -0.0
4,416,242 + OH686_21695 0.46 -0.1
4,416,243 - OH686_21695 0.46 -1.4
4,416,243 - OH686_21695 0.46 +0.1
4,416,243 - OH686_21695 0.46 +0.7
4,416,272 + OH686_21695 0.49 -0.2
4,416,273 - OH686_21695 0.49 +1.1
4,416,283 + OH686_21695 0.50 -0.9
4,416,314 + OH686_21695 0.52 +0.3
4,416,314 + OH686_21695 0.52 -0.7
4,416,314 + OH686_21695 0.52 +0.2
4,416,314 + OH686_21695 0.52 -1.4
4,416,314 + OH686_21695 0.52 +0.1
4,416,315 - OH686_21695 0.52 +0.5
4,416,315 - OH686_21695 0.52 -0.4
4,416,315 - OH686_21695 0.52 +0.2
4,416,422 + OH686_21695 0.61 -0.2
4,416,429 - OH686_21695 0.62 -0.6
4,416,554 + OH686_21695 0.72 -0.1
4,416,554 + OH686_21695 0.72 -0.4
4,416,554 + OH686_21695 0.72 -0.3
4,416,554 + OH686_21695 0.72 +1.0
4,416,555 - OH686_21695 0.72 +1.7
4,416,555 - OH686_21695 0.72 +0.8
4,416,555 - OH686_21695 0.72 +0.3
4,416,555 - OH686_21695 0.72 +0.1
4,416,728 + OH686_21695 0.87 +0.7
4,416,728 + OH686_21695 0.87 -0.3
4,416,728 + OH686_21695 0.87 -0.3
4,416,729 - OH686_21695 0.87 +0.3
4,416,729 - OH686_21695 0.87 -0.1
4,416,729 - OH686_21695 0.87 +0.4
4,416,729 - OH686_21695 0.87 -0.8
4,416,729 - OH686_21695 0.87 +0.8
4,416,880 + -0.1
4,416,881 - +0.3
4,417,036 + OH686_21700 0.32 +1.7
4,417,037 - OH686_21700 0.32 +0.8
4,417,037 - OH686_21700 0.32 +1.0
4,417,037 - OH686_21700 0.32 +0.2
4,417,046 + OH686_21700 0.34 -0.3
4,417,123 + OH686_21700 0.49 -1.3
4,417,360 + +1.2
4,417,360 + +0.2
4,417,360 + -0.4
4,417,360 + -0.8
4,417,360 + -0.2
4,417,360 + +0.6
4,417,360 + -1.0
4,417,360 + -1.0
4,417,360 + -1.4
4,417,360 + +0.3
4,417,360 + +0.5
4,417,361 - -2.1
4,417,361 - -0.3
4,417,361 - +0.6
4,417,399 + -0.6
4,417,399 + +0.0
4,417,400 - +0.2
4,417,481 + OH686_21705 0.19 +0.4
4,417,481 + OH686_21705 0.19 -0.2
4,417,481 + OH686_21705 0.19 -0.1
4,417,482 - OH686_21705 0.20 +0.4
4,417,482 - OH686_21705 0.20 +0.2
4,417,482 - OH686_21705 0.20 -0.3
4,417,482 - OH686_21705 0.20 -0.5
4,417,705 + OH686_21705 0.69 -0.4
4,417,705 + OH686_21705 0.69 +0.2
4,417,705 + OH686_21705 0.69 -1.5
4,417,706 - OH686_21705 0.69 +0.2
4,417,706 - OH686_21705 0.69 +0.5
4,417,706 - OH686_21705 0.69 -0.8
4,417,706 - OH686_21705 0.69 +0.7
4,417,805 + +0.1
4,417,806 - -1.1
4,417,881 - -0.1
4,417,919 + -0.5
4,417,920 - +0.3
4,417,925 + +0.1
4,417,925 + +0.6
4,417,926 - -0.6
4,417,926 - +0.9
4,417,926 - +0.4
4,418,021 + -0.2
4,418,022 - -1.3
4,418,033 - OH686_21710 0.10 -0.9
4,418,049 - OH686_21710 0.11 -2.0
4,418,108 + OH686_21710 0.14 -0.8
4,418,108 + OH686_21710 0.14 +0.4
4,418,108 + OH686_21710 0.14 -1.1
4,418,108 + OH686_21710 0.14 -0.3
4,418,108 + OH686_21710 0.14 -1.1
4,418,109 - OH686_21710 0.14 +0.0
4,418,109 - OH686_21710 0.14 -0.4
4,418,312 + OH686_21710 0.25 +0.4
4,418,312 + OH686_21710 0.25 +0.4
4,418,312 + OH686_21710 0.25 +0.1
4,418,313 - OH686_21710 0.25 -1.4
4,418,313 - OH686_21710 0.25 +0.5
4,418,313 - OH686_21710 0.25 -1.1
4,418,313 - OH686_21710 0.25 +0.4
4,418,313 - OH686_21710 0.25 +0.1
4,418,313 - OH686_21710 0.25 -1.3
4,418,313 - OH686_21710 0.25 -1.8
4,418,313 - OH686_21710 0.25 +0.0
4,418,313 - OH686_21710 0.25 -0.3

Or see this region's nucleotide sequence