Strain Fitness in Pseudomonas sp. S08-1 around OH686_21470

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21460 and OH686_21465 overlap by 4 nucleotidesOH686_21465 and OH686_21470 overlap by 4 nucleotidesOH686_21470 and OH686_21475 overlap by 8 nucleotides OH686_21460: OH686_21460 - Superfamily II DNA/RNA , SNF2 family, at 4,384,444 to 4,387,062 _21460 OH686_21465: OH686_21465 - hypothetical protein, at 4,387,059 to 4,387,295 _21465 OH686_21470: OH686_21470 - Alginate biosynthesis transcriptional activator, at 4,387,292 to 4,387,666 _21470 OH686_21475: OH686_21475 - DNA recombination-dependent growth factor RdgC, at 4,387,659 to 4,388,903 _21475 Position (kb) 4387 4388Strain fitness (log2 ratio) -1 0 1at 4386.381 kb on + strand, within OH686_21460at 4386.381 kb on + strand, within OH686_21460at 4386.381 kb on + strand, within OH686_21460at 4386.479 kb on + strand, within OH686_21460at 4386.480 kb on - strand, within OH686_21460at 4386.493 kb on + strand, within OH686_21460at 4386.493 kb on + strand, within OH686_21460at 4386.493 kb on + strand, within OH686_21460at 4386.493 kb on + strand, within OH686_21460at 4386.493 kb on + strand, within OH686_21460at 4386.493 kb on + strand, within OH686_21460at 4386.493 kb on + strand, within OH686_21460at 4386.494 kb on - strand, within OH686_21460at 4386.494 kb on - strand, within OH686_21460at 4386.494 kb on - strand, within OH686_21460at 4386.494 kb on - strand, within OH686_21460at 4386.494 kb on - strand, within OH686_21460at 4386.494 kb on - strand, within OH686_21460at 4386.494 kb on - strand, within OH686_21460at 4386.497 kb on + strand, within OH686_21460at 4386.497 kb on + strand, within OH686_21460at 4386.497 kb on + strand, within OH686_21460at 4386.497 kb on + strand, within OH686_21460at 4386.497 kb on + strand, within OH686_21460at 4386.497 kb on + strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.498 kb on - strand, within OH686_21460at 4386.632 kb on - strand, within OH686_21460at 4386.632 kb on - strand, within OH686_21460at 4386.704 kb on + strand, within OH686_21460at 4386.704 kb on + strand, within OH686_21460at 4386.704 kb on + strand, within OH686_21460at 4386.705 kb on - strand, within OH686_21460at 4386.716 kb on + strand, within OH686_21460at 4386.716 kb on + strand, within OH686_21460at 4386.716 kb on + strand, within OH686_21460at 4386.716 kb on + strand, within OH686_21460at 4386.716 kb on + strand, within OH686_21460at 4386.716 kb on + strand, within OH686_21460at 4386.717 kb on - strand, within OH686_21460at 4386.717 kb on - strand, within OH686_21460at 4386.828 kb on + strandat 4386.828 kb on + strandat 4386.828 kb on + strandat 4386.880 kb on + strandat 4386.880 kb on + strandat 4386.881 kb on - strandat 4386.881 kb on - strandat 4386.881 kb on - strandat 4387.138 kb on + strand, within OH686_21465at 4387.139 kb on - strand, within OH686_21465at 4387.159 kb on + strand, within OH686_21465at 4387.160 kb on - strand, within OH686_21465at 4387.203 kb on - strand, within OH686_21465at 4387.419 kb on + strand, within OH686_21470at 4387.419 kb on + strand, within OH686_21470at 4387.420 kb on - strand, within OH686_21470at 4387.420 kb on - strand, within OH686_21470at 4387.483 kb on + strand, within OH686_21470at 4387.577 kb on - strand, within OH686_21470at 4387.753 kb on + strandat 4387.753 kb on + strandat 4387.753 kb on + strandat 4387.754 kb on - strandat 4387.831 kb on + strand, within OH686_21475at 4387.832 kb on - strand, within OH686_21475at 4387.832 kb on - strand, within OH686_21475at 4387.832 kb on - strand, within OH686_21475at 4387.851 kb on - strand, within OH686_21475at 4388.605 kb on + strand, within OH686_21475at 4388.605 kb on + strand, within OH686_21475

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,386,381 + OH686_21460 0.74 -0.3
4,386,381 + OH686_21460 0.74 -0.5
4,386,381 + OH686_21460 0.74 -0.2
4,386,479 + OH686_21460 0.78 -1.2
4,386,480 - OH686_21460 0.78 -0.6
4,386,493 + OH686_21460 0.78 -0.4
4,386,493 + OH686_21460 0.78 +0.1
4,386,493 + OH686_21460 0.78 +0.2
4,386,493 + OH686_21460 0.78 -0.3
4,386,493 + OH686_21460 0.78 +0.4
4,386,493 + OH686_21460 0.78 -1.6
4,386,493 + OH686_21460 0.78 -0.3
4,386,494 - OH686_21460 0.78 +0.0
4,386,494 - OH686_21460 0.78 +0.6
4,386,494 - OH686_21460 0.78 -0.3
4,386,494 - OH686_21460 0.78 +0.7
4,386,494 - OH686_21460 0.78 -1.7
4,386,494 - OH686_21460 0.78 +0.1
4,386,494 - OH686_21460 0.78 -0.6
4,386,497 + OH686_21460 0.78 -0.7
4,386,497 + OH686_21460 0.78 -0.1
4,386,497 + OH686_21460 0.78 -0.2
4,386,497 + OH686_21460 0.78 -0.2
4,386,497 + OH686_21460 0.78 +0.1
4,386,497 + OH686_21460 0.78 +0.2
4,386,498 - OH686_21460 0.78 +0.2
4,386,498 - OH686_21460 0.78 +0.3
4,386,498 - OH686_21460 0.78 -1.2
4,386,498 - OH686_21460 0.78 +0.3
4,386,498 - OH686_21460 0.78 -0.4
4,386,498 - OH686_21460 0.78 -0.0
4,386,498 - OH686_21460 0.78 -0.5
4,386,498 - OH686_21460 0.78 +0.1
4,386,498 - OH686_21460 0.78 +0.2
4,386,632 - OH686_21460 0.84 +0.2
4,386,632 - OH686_21460 0.84 -1.0
4,386,704 + OH686_21460 0.86 +0.0
4,386,704 + OH686_21460 0.86 -0.2
4,386,704 + OH686_21460 0.86 -0.2
4,386,705 - OH686_21460 0.86 -0.5
4,386,716 + OH686_21460 0.87 -0.1
4,386,716 + OH686_21460 0.87 -0.7
4,386,716 + OH686_21460 0.87 -0.5
4,386,716 + OH686_21460 0.87 +0.3
4,386,716 + OH686_21460 0.87 +0.3
4,386,716 + OH686_21460 0.87 +0.0
4,386,717 - OH686_21460 0.87 +0.3
4,386,717 - OH686_21460 0.87 +0.3
4,386,828 + -0.5
4,386,828 + +0.6
4,386,828 + +0.3
4,386,880 + +0.7
4,386,880 + +0.4
4,386,881 - +0.4
4,386,881 - -1.5
4,386,881 - -1.3
4,387,138 + OH686_21465 0.33 -0.5
4,387,139 - OH686_21465 0.34 +0.0
4,387,159 + OH686_21465 0.42 -0.1
4,387,160 - OH686_21465 0.43 +0.1
4,387,203 - OH686_21465 0.61 -0.7
4,387,419 + OH686_21470 0.34 +0.9
4,387,419 + OH686_21470 0.34 +0.1
4,387,420 - OH686_21470 0.34 -0.3
4,387,420 - OH686_21470 0.34 +1.3
4,387,483 + OH686_21470 0.51 -1.0
4,387,577 - OH686_21470 0.76 +0.5
4,387,753 + +0.1
4,387,753 + -0.5
4,387,753 + +0.7
4,387,754 - -0.3
4,387,831 + OH686_21475 0.14 +0.3
4,387,832 - OH686_21475 0.14 +0.4
4,387,832 - OH686_21475 0.14 -1.0
4,387,832 - OH686_21475 0.14 -0.8
4,387,851 - OH686_21475 0.15 -0.5
4,388,605 + OH686_21475 0.76 +0.3
4,388,605 + OH686_21475 0.76 +0.7

Or see this region's nucleotide sequence