Strain Fitness in Pseudomonas sp. S08-1 around OH686_21010

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21005 and OH686_21010 are separated by 6 nucleotidesOH686_21010 and OH686_21015 overlap by 8 nucleotides OH686_21005: OH686_21005 - putative membrane protein, at 4,298,326 to 4,299,285 _21005 OH686_21010: OH686_21010 - NAD(P)H dehydrogenase (quinone) family protein, at 4,299,292 to 4,299,912 _21010 OH686_21015: OH686_21015 - fumarate hydratase, class II, at 4,299,905 to 4,301,299 _21015 Position (kb) 4299 4300Strain fitness (log2 ratio) -2 -1 0 1 2at 4298.480 kb on + strand, within OH686_21005at 4298.480 kb on + strand, within OH686_21005at 4298.480 kb on + strand, within OH686_21005at 4298.480 kb on + strand, within OH686_21005at 4298.480 kb on + strand, within OH686_21005at 4298.480 kb on + strand, within OH686_21005at 4298.481 kb on - strand, within OH686_21005at 4298.481 kb on - strand, within OH686_21005at 4298.481 kb on - strand, within OH686_21005at 4298.481 kb on - strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.587 kb on + strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.588 kb on - strand, within OH686_21005at 4298.596 kb on + strand, within OH686_21005at 4298.596 kb on + strand, within OH686_21005at 4298.596 kb on + strand, within OH686_21005at 4298.597 kb on - strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.800 kb on + strand, within OH686_21005at 4298.801 kb on + strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.801 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.852 kb on - strand, within OH686_21005at 4298.914 kb on + strand, within OH686_21005at 4298.914 kb on + strand, within OH686_21005at 4298.914 kb on + strand, within OH686_21005at 4298.914 kb on + strand, within OH686_21005at 4298.914 kb on + strand, within OH686_21005at 4298.914 kb on + strand, within OH686_21005at 4298.915 kb on - strand, within OH686_21005at 4298.915 kb on - strand, within OH686_21005at 4298.915 kb on - strand, within OH686_21005at 4298.915 kb on - strand, within OH686_21005at 4298.915 kb on - strand, within OH686_21005at 4299.028 kb on + strand, within OH686_21005at 4299.029 kb on - strand, within OH686_21005at 4299.284 kb on - strandat 4299.284 kb on - strandat 4299.449 kb on + strand, within OH686_21010at 4299.449 kb on + strand, within OH686_21010at 4299.450 kb on - strand, within OH686_21010at 4299.450 kb on - strand, within OH686_21010at 4299.464 kb on + strand, within OH686_21010at 4299.464 kb on + strand, within OH686_21010at 4299.465 kb on - strand, within OH686_21010at 4299.549 kb on - strand, within OH686_21010at 4299.549 kb on - strand, within OH686_21010at 4299.549 kb on - strand, within OH686_21010at 4299.549 kb on - strand, within OH686_21010at 4299.797 kb on + strand, within OH686_21010at 4299.797 kb on + strand, within OH686_21010at 4299.797 kb on + strand, within OH686_21010at 4299.798 kb on - strand, within OH686_21010at 4299.798 kb on - strand, within OH686_21010at 4300.020 kb on + strandat 4300.020 kb on + strandat 4300.021 kb on - strandat 4300.021 kb on - strandat 4300.021 kb on - strandat 4300.021 kb on - strandat 4300.053 kb on + strand, within OH686_21015at 4300.677 kb on + strand, within OH686_21015at 4300.678 kb on - strand, within OH686_21015at 4300.678 kb on - strand, within OH686_21015

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,298,480 + OH686_21005 0.16 -0.1
4,298,480 + OH686_21005 0.16 -0.0
4,298,480 + OH686_21005 0.16 +0.1
4,298,480 + OH686_21005 0.16 -0.2
4,298,480 + OH686_21005 0.16 -0.6
4,298,480 + OH686_21005 0.16 -2.3
4,298,481 - OH686_21005 0.16 +0.1
4,298,481 - OH686_21005 0.16 -0.2
4,298,481 - OH686_21005 0.16 +0.3
4,298,481 - OH686_21005 0.16 -0.3
4,298,587 + OH686_21005 0.27 -0.4
4,298,587 + OH686_21005 0.27 -0.3
4,298,587 + OH686_21005 0.27 -0.2
4,298,587 + OH686_21005 0.27 -0.6
4,298,587 + OH686_21005 0.27 +0.2
4,298,587 + OH686_21005 0.27 -0.2
4,298,587 + OH686_21005 0.27 -0.0
4,298,587 + OH686_21005 0.27 +0.3
4,298,587 + OH686_21005 0.27 -0.5
4,298,587 + OH686_21005 0.27 -0.3
4,298,588 - OH686_21005 0.27 -0.0
4,298,588 - OH686_21005 0.27 -0.5
4,298,588 - OH686_21005 0.27 -0.2
4,298,588 - OH686_21005 0.27 -0.5
4,298,588 - OH686_21005 0.27 -0.8
4,298,588 - OH686_21005 0.27 -0.7
4,298,588 - OH686_21005 0.27 -0.6
4,298,588 - OH686_21005 0.27 +0.7
4,298,588 - OH686_21005 0.27 +0.4
4,298,596 + OH686_21005 0.28 -0.7
4,298,596 + OH686_21005 0.28 -0.1
4,298,596 + OH686_21005 0.28 -1.8
4,298,597 - OH686_21005 0.28 -0.2
4,298,800 + OH686_21005 0.49 +0.0
4,298,800 + OH686_21005 0.49 -0.1
4,298,800 + OH686_21005 0.49 -0.3
4,298,800 + OH686_21005 0.49 +1.0
4,298,800 + OH686_21005 0.49 +0.4
4,298,800 + OH686_21005 0.49 -0.9
4,298,800 + OH686_21005 0.49 -0.0
4,298,800 + OH686_21005 0.49 +1.9
4,298,800 + OH686_21005 0.49 -0.7
4,298,800 + OH686_21005 0.49 +0.7
4,298,800 + OH686_21005 0.49 +0.4
4,298,800 + OH686_21005 0.49 -0.3
4,298,801 + OH686_21005 0.49 +0.5
4,298,801 - OH686_21005 0.49 +0.2
4,298,801 - OH686_21005 0.49 +0.3
4,298,801 - OH686_21005 0.49 +0.4
4,298,801 - OH686_21005 0.49 +0.7
4,298,801 - OH686_21005 0.49 -0.4
4,298,801 - OH686_21005 0.49 +0.7
4,298,801 - OH686_21005 0.49 -0.4
4,298,801 - OH686_21005 0.49 +0.3
4,298,801 - OH686_21005 0.49 +0.1
4,298,801 - OH686_21005 0.49 +0.9
4,298,852 - OH686_21005 0.55 +0.3
4,298,852 - OH686_21005 0.55 -0.7
4,298,852 - OH686_21005 0.55 +0.0
4,298,852 - OH686_21005 0.55 -0.0
4,298,852 - OH686_21005 0.55 +1.3
4,298,852 - OH686_21005 0.55 -0.7
4,298,852 - OH686_21005 0.55 +0.2
4,298,852 - OH686_21005 0.55 -0.3
4,298,914 + OH686_21005 0.61 +0.9
4,298,914 + OH686_21005 0.61 +0.2
4,298,914 + OH686_21005 0.61 +1.7
4,298,914 + OH686_21005 0.61 +1.2
4,298,914 + OH686_21005 0.61 +0.2
4,298,914 + OH686_21005 0.61 -0.6
4,298,915 - OH686_21005 0.61 -0.4
4,298,915 - OH686_21005 0.61 -0.8
4,298,915 - OH686_21005 0.61 -0.3
4,298,915 - OH686_21005 0.61 +0.3
4,298,915 - OH686_21005 0.61 +0.0
4,299,028 + OH686_21005 0.73 -1.0
4,299,029 - OH686_21005 0.73 -1.1
4,299,284 - -0.2
4,299,284 - -0.7
4,299,449 + OH686_21010 0.25 -2.6
4,299,449 + OH686_21010 0.25 -0.3
4,299,450 - OH686_21010 0.25 +0.1
4,299,450 - OH686_21010 0.25 +0.4
4,299,464 + OH686_21010 0.28 +0.8
4,299,464 + OH686_21010 0.28 +0.1
4,299,465 - OH686_21010 0.28 +0.3
4,299,549 - OH686_21010 0.41 +1.1
4,299,549 - OH686_21010 0.41 +1.0
4,299,549 - OH686_21010 0.41 +0.3
4,299,549 - OH686_21010 0.41 +0.3
4,299,797 + OH686_21010 0.81 +0.5
4,299,797 + OH686_21010 0.81 -0.1
4,299,797 + OH686_21010 0.81 +0.6
4,299,798 - OH686_21010 0.81 +0.2
4,299,798 - OH686_21010 0.81 -0.7
4,300,020 + -1.3
4,300,020 + -0.2
4,300,021 - +0.3
4,300,021 - +0.2
4,300,021 - +0.0
4,300,021 - +0.7
4,300,053 + OH686_21015 0.11 +0.4
4,300,677 + OH686_21015 0.55 +0.1
4,300,678 - OH686_21015 0.55 -1.7
4,300,678 - OH686_21015 0.55 -0.4

Or see this region's nucleotide sequence