Strain Fitness in Pseudomonas sp. S08-1 around OH686_20595

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_20585 and OH686_20590 are separated by 223 nucleotidesOH686_20590 and OH686_20595 are separated by 164 nucleotidesOH686_20595 and OH686_20600 are separated by 157 nucleotides OH686_20585: OH686_20585 - Na+/H+-dicarboxylate symporter, at 4,200,708 to 4,202,000 _20585 OH686_20590: OH686_20590 - CDS, at 4,202,224 to 4,202,361 _20590 OH686_20595: OH686_20595 - Isocitrate dehydrogenase phosphatase /kinase , at 4,202,526 to 4,204,253 _20595 OH686_20600: OH686_20600 - Aerotaxis sensor receptor protein, at 4,204,411 to 4,205,976 _20600 Position (kb) 4202 4203 4204 4205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4201.544 kb on + strand, within OH686_20585at 4201.544 kb on + strand, within OH686_20585at 4201.603 kb on - strand, within OH686_20585at 4201.633 kb on - strand, within OH686_20585at 4201.633 kb on - strand, within OH686_20585at 4201.633 kb on - strand, within OH686_20585at 4201.651 kb on + strand, within OH686_20585at 4201.763 kb on + strand, within OH686_20585at 4201.764 kb on - strand, within OH686_20585at 4201.764 kb on - strand, within OH686_20585at 4201.951 kb on + strandat 4202.142 kb on + strandat 4202.142 kb on + strandat 4202.142 kb on + strandat 4202.142 kb on + strandat 4202.143 kb on - strandat 4202.143 kb on - strandat 4202.143 kb on - strandat 4202.143 kb on - strandat 4202.143 kb on - strandat 4202.143 kb on - strandat 4202.387 kb on + strandat 4202.387 kb on + strandat 4202.388 kb on - strandat 4202.488 kb on + strandat 4202.488 kb on + strandat 4202.488 kb on + strandat 4202.489 kb on - strandat 4202.489 kb on - strandat 4202.489 kb on - strandat 4202.689 kb on - strandat 4202.689 kb on - strandat 4202.689 kb on - strandat 4202.787 kb on + strand, within OH686_20595at 4202.787 kb on + strand, within OH686_20595at 4202.787 kb on + strand, within OH686_20595at 4202.787 kb on + strand, within OH686_20595at 4202.787 kb on + strand, within OH686_20595at 4202.787 kb on + strand, within OH686_20595at 4202.788 kb on - strand, within OH686_20595at 4202.788 kb on - strand, within OH686_20595at 4202.788 kb on - strand, within OH686_20595at 4202.788 kb on - strand, within OH686_20595at 4202.788 kb on - strand, within OH686_20595at 4202.788 kb on - strand, within OH686_20595at 4202.788 kb on - strand, within OH686_20595at 4202.838 kb on + strand, within OH686_20595at 4202.838 kb on + strand, within OH686_20595at 4202.838 kb on + strand, within OH686_20595at 4202.838 kb on + strand, within OH686_20595at 4202.838 kb on + strand, within OH686_20595at 4202.838 kb on + strand, within OH686_20595at 4202.839 kb on - strand, within OH686_20595at 4202.955 kb on + strand, within OH686_20595at 4202.955 kb on + strand, within OH686_20595at 4202.955 kb on + strand, within OH686_20595at 4202.956 kb on - strand, within OH686_20595at 4202.956 kb on - strand, within OH686_20595at 4202.956 kb on - strand, within OH686_20595at 4203.006 kb on + strand, within OH686_20595at 4203.007 kb on - strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.012 kb on + strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.013 kb on - strand, within OH686_20595at 4203.138 kb on + strand, within OH686_20595at 4203.157 kb on - strand, within OH686_20595at 4203.202 kb on + strand, within OH686_20595at 4203.202 kb on + strand, within OH686_20595at 4203.203 kb on - strand, within OH686_20595at 4203.203 kb on - strand, within OH686_20595at 4203.300 kb on + strand, within OH686_20595at 4203.300 kb on + strand, within OH686_20595at 4203.300 kb on + strand, within OH686_20595at 4203.300 kb on + strand, within OH686_20595at 4203.301 kb on - strand, within OH686_20595at 4203.301 kb on - strand, within OH686_20595at 4203.301 kb on - strand, within OH686_20595at 4203.301 kb on - strand, within OH686_20595at 4203.301 kb on - strand, within OH686_20595at 4203.301 kb on - strand, within OH686_20595at 4203.384 kb on + strand, within OH686_20595at 4203.384 kb on + strand, within OH686_20595at 4203.384 kb on + strand, within OH686_20595at 4203.384 kb on + strand, within OH686_20595at 4203.384 kb on + strand, within OH686_20595at 4203.384 kb on + strand, within OH686_20595at 4203.385 kb on - strand, within OH686_20595at 4203.385 kb on - strand, within OH686_20595at 4203.385 kb on - strand, within OH686_20595at 4203.385 kb on - strand, within OH686_20595at 4203.385 kb on - strand, within OH686_20595at 4203.402 kb on + strand, within OH686_20595at 4203.402 kb on + strand, within OH686_20595at 4203.402 kb on + strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.403 kb on - strand, within OH686_20595at 4203.426 kb on + strand, within OH686_20595at 4203.603 kb on + strand, within OH686_20595at 4203.603 kb on + strand, within OH686_20595at 4203.603 kb on + strand, within OH686_20595at 4203.603 kb on + strand, within OH686_20595at 4203.603 kb on + strand, within OH686_20595at 4203.604 kb on - strand, within OH686_20595at 4203.810 kb on + strand, within OH686_20595at 4203.810 kb on + strand, within OH686_20595at 4203.810 kb on + strand, within OH686_20595at 4203.810 kb on + strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.811 kb on - strand, within OH686_20595at 4203.858 kb on + strand, within OH686_20595at 4203.858 kb on + strand, within OH686_20595at 4203.859 kb on - strand, within OH686_20595at 4203.893 kb on + strand, within OH686_20595at 4203.894 kb on - strand, within OH686_20595at 4203.894 kb on - strand, within OH686_20595at 4203.957 kb on + strand, within OH686_20595at 4203.957 kb on + strand, within OH686_20595at 4203.957 kb on + strand, within OH686_20595at 4203.957 kb on + strand, within OH686_20595at 4203.958 kb on - strand, within OH686_20595at 4203.958 kb on - strand, within OH686_20595at 4203.958 kb on - strand, within OH686_20595at 4203.963 kb on + strand, within OH686_20595at 4203.963 kb on + strand, within OH686_20595at 4203.963 kb on + strand, within OH686_20595at 4203.963 kb on + strand, within OH686_20595at 4203.978 kb on + strand, within OH686_20595at 4203.979 kb on - strand, within OH686_20595at 4203.979 kb on - strand, within OH686_20595at 4203.979 kb on - strand, within OH686_20595at 4203.979 kb on - strand, within OH686_20595at 4203.979 kb on - strand, within OH686_20595at 4204.020 kb on + strand, within OH686_20595at 4204.020 kb on + strand, within OH686_20595at 4204.054 kb on - strand, within OH686_20595at 4204.280 kb on + strandat 4204.284 kb on - strandat 4204.284 kb on - strandat 4204.284 kb on - strandat 4204.351 kb on + strandat 4204.351 kb on + strandat 4204.351 kb on + strandat 4204.351 kb on + strandat 4204.352 kb on - strandat 4204.352 kb on - strandat 4204.365 kb on + strandat 4204.365 kb on + strandat 4204.365 kb on + strandat 4204.365 kb on + strandat 4204.365 kb on + strandat 4204.365 kb on + strandat 4204.366 kb on - strandat 4204.366 kb on - strandat 4204.410 kb on + strandat 4204.410 kb on + strandat 4204.411 kb on - strandat 4204.411 kb on - strandat 4204.411 kb on - strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.504 kb on + strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.505 kb on - strandat 4204.687 kb on + strand, within OH686_20600at 4204.702 kb on + strand, within OH686_20600at 4204.702 kb on + strand, within OH686_20600at 4204.707 kb on + strand, within OH686_20600at 4204.717 kb on + strand, within OH686_20600at 4204.718 kb on - strand, within OH686_20600at 4204.718 kb on - strand, within OH686_20600at 4204.718 kb on - strand, within OH686_20600at 4204.798 kb on + strand, within OH686_20600at 4204.799 kb on - strand, within OH686_20600at 4204.799 kb on - strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.852 kb on + strand, within OH686_20600at 4204.853 kb on - strand, within OH686_20600at 4204.984 kb on + strand, within OH686_20600at 4204.984 kb on + strand, within OH686_20600at 4204.985 kb on - strand, within OH686_20600at 4204.985 kb on - strand, within OH686_20600at 4204.985 kb on - strand, within OH686_20600at 4204.985 kb on - strand, within OH686_20600at 4205.062 kb on + strand, within OH686_20600at 4205.063 kb on - strand, within OH686_20600at 4205.063 kb on - strand, within OH686_20600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
4,201,544 + OH686_20585 0.65 -0.4
4,201,544 + OH686_20585 0.65 +0.7
4,201,603 - OH686_20585 0.69 +0.0
4,201,633 - OH686_20585 0.72 +0.1
4,201,633 - OH686_20585 0.72 -0.3
4,201,633 - OH686_20585 0.72 +1.1
4,201,651 + OH686_20585 0.73 -0.1
4,201,763 + OH686_20585 0.82 -0.5
4,201,764 - OH686_20585 0.82 -0.4
4,201,764 - OH686_20585 0.82 -0.1
4,201,951 + +0.8
4,202,142 + +0.4
4,202,142 + +0.6
4,202,142 + -0.6
4,202,142 + -0.9
4,202,143 - +0.1
4,202,143 - +0.2
4,202,143 - -0.4
4,202,143 - -0.1
4,202,143 - +0.6
4,202,143 - -0.3
4,202,387 + +2.4
4,202,387 + -0.9
4,202,388 - -0.1
4,202,488 + -0.5
4,202,488 + -0.4
4,202,488 + -0.3
4,202,489 - -0.1
4,202,489 - -0.5
4,202,489 - -1.1
4,202,689 - -2.1
4,202,689 - -0.7
4,202,689 - -1.1
4,202,787 + OH686_20595 0.15 -0.7
4,202,787 + OH686_20595 0.15 -1.2
4,202,787 + OH686_20595 0.15 -1.6
4,202,787 + OH686_20595 0.15 -1.0
4,202,787 + OH686_20595 0.15 -0.3
4,202,787 + OH686_20595 0.15 -0.6
4,202,788 - OH686_20595 0.15 -0.6
4,202,788 - OH686_20595 0.15 -1.0
4,202,788 - OH686_20595 0.15 -0.1
4,202,788 - OH686_20595 0.15 -1.1
4,202,788 - OH686_20595 0.15 -1.2
4,202,788 - OH686_20595 0.15 -1.1
4,202,788 - OH686_20595 0.15 -2.0
4,202,838 + OH686_20595 0.18 +0.7
4,202,838 + OH686_20595 0.18 -0.1
4,202,838 + OH686_20595 0.18 +0.7
4,202,838 + OH686_20595 0.18 -0.7
4,202,838 + OH686_20595 0.18 -0.1
4,202,838 + OH686_20595 0.18 -0.1
4,202,839 - OH686_20595 0.18 -0.3
4,202,955 + OH686_20595 0.25 -0.5
4,202,955 + OH686_20595 0.25 -1.7
4,202,955 + OH686_20595 0.25 -0.2
4,202,956 - OH686_20595 0.25 -1.7
4,202,956 - OH686_20595 0.25 -1.1
4,202,956 - OH686_20595 0.25 -0.7
4,203,006 + OH686_20595 0.28 -2.9
4,203,007 - OH686_20595 0.28 -1.4
4,203,012 + OH686_20595 0.28 -1.6
4,203,012 + OH686_20595 0.28 +0.1
4,203,012 + OH686_20595 0.28 -0.8
4,203,012 + OH686_20595 0.28 +0.6
4,203,012 + OH686_20595 0.28 -0.1
4,203,012 + OH686_20595 0.28 -0.2
4,203,012 + OH686_20595 0.28 -0.3
4,203,012 + OH686_20595 0.28 -0.2
4,203,013 - OH686_20595 0.28 -0.3
4,203,013 - OH686_20595 0.28 -0.3
4,203,013 - OH686_20595 0.28 -2.6
4,203,013 - OH686_20595 0.28 -2.2
4,203,013 - OH686_20595 0.28 -1.9
4,203,013 - OH686_20595 0.28 -0.4
4,203,013 - OH686_20595 0.28 -0.6
4,203,013 - OH686_20595 0.28 +0.3
4,203,013 - OH686_20595 0.28 -1.1
4,203,138 + OH686_20595 0.35 +0.0
4,203,157 - OH686_20595 0.37 -1.1
4,203,202 + OH686_20595 0.39 -0.9
4,203,202 + OH686_20595 0.39 -1.4
4,203,203 - OH686_20595 0.39 -0.9
4,203,203 - OH686_20595 0.39 -2.1
4,203,300 + OH686_20595 0.45 -1.0
4,203,300 + OH686_20595 0.45 -0.4
4,203,300 + OH686_20595 0.45 -0.2
4,203,300 + OH686_20595 0.45 -1.1
4,203,301 - OH686_20595 0.45 -1.4
4,203,301 - OH686_20595 0.45 -1.7
4,203,301 - OH686_20595 0.45 -1.3
4,203,301 - OH686_20595 0.45 +0.1
4,203,301 - OH686_20595 0.45 -1.2
4,203,301 - OH686_20595 0.45 -1.0
4,203,384 + OH686_20595 0.50 -0.4
4,203,384 + OH686_20595 0.50 -1.2
4,203,384 + OH686_20595 0.50 -0.1
4,203,384 + OH686_20595 0.50 -1.0
4,203,384 + OH686_20595 0.50 -0.4
4,203,384 + OH686_20595 0.50 -0.3
4,203,385 - OH686_20595 0.50 -2.3
4,203,385 - OH686_20595 0.50 -2.1
4,203,385 - OH686_20595 0.50 -0.6
4,203,385 - OH686_20595 0.50 -2.1
4,203,385 - OH686_20595 0.50 -1.4
4,203,402 + OH686_20595 0.51 -0.4
4,203,402 + OH686_20595 0.51 +0.9
4,203,402 + OH686_20595 0.51 -0.1
4,203,403 - OH686_20595 0.51 +0.3
4,203,403 - OH686_20595 0.51 -0.4
4,203,403 - OH686_20595 0.51 +1.7
4,203,403 - OH686_20595 0.51 -2.3
4,203,403 - OH686_20595 0.51 -2.5
4,203,403 - OH686_20595 0.51 -0.3
4,203,403 - OH686_20595 0.51 -0.9
4,203,403 - OH686_20595 0.51 -1.4
4,203,426 + OH686_20595 0.52 -1.0
4,203,603 + OH686_20595 0.62 -1.0
4,203,603 + OH686_20595 0.62 -1.9
4,203,603 + OH686_20595 0.62 -1.4
4,203,603 + OH686_20595 0.62 -2.3
4,203,603 + OH686_20595 0.62 -2.6
4,203,604 - OH686_20595 0.62 -3.7
4,203,810 + OH686_20595 0.74 -0.2
4,203,810 + OH686_20595 0.74 -1.3
4,203,810 + OH686_20595 0.74 -0.3
4,203,810 + OH686_20595 0.74 -1.6
4,203,811 - OH686_20595 0.74 -1.8
4,203,811 - OH686_20595 0.74 -0.8
4,203,811 - OH686_20595 0.74 -1.5
4,203,811 - OH686_20595 0.74 -1.6
4,203,811 - OH686_20595 0.74 -0.5
4,203,811 - OH686_20595 0.74 -0.3
4,203,811 - OH686_20595 0.74 -1.6
4,203,811 - OH686_20595 0.74 -0.8
4,203,811 - OH686_20595 0.74 -1.5
4,203,811 - OH686_20595 0.74 -2.0
4,203,858 + OH686_20595 0.77 -1.7
4,203,858 + OH686_20595 0.77 -0.3
4,203,859 - OH686_20595 0.77 -2.3
4,203,893 + OH686_20595 0.79 -2.9
4,203,894 - OH686_20595 0.79 -0.7
4,203,894 - OH686_20595 0.79 -0.2
4,203,957 + OH686_20595 0.83 -1.3
4,203,957 + OH686_20595 0.83 -2.4
4,203,957 + OH686_20595 0.83 -2.5
4,203,957 + OH686_20595 0.83 -1.6
4,203,958 - OH686_20595 0.83 +0.3
4,203,958 - OH686_20595 0.83 -3.4
4,203,958 - OH686_20595 0.83 -2.7
4,203,963 + OH686_20595 0.83 -2.6
4,203,963 + OH686_20595 0.83 -2.3
4,203,963 + OH686_20595 0.83 -1.7
4,203,963 + OH686_20595 0.83 -1.2
4,203,978 + OH686_20595 0.84 -0.4
4,203,979 - OH686_20595 0.84 -1.9
4,203,979 - OH686_20595 0.84 -1.1
4,203,979 - OH686_20595 0.84 +0.1
4,203,979 - OH686_20595 0.84 -1.1
4,203,979 - OH686_20595 0.84 -2.4
4,204,020 + OH686_20595 0.86 -1.6
4,204,020 + OH686_20595 0.86 -0.5
4,204,054 - OH686_20595 0.88 -0.0
4,204,280 + -0.1
4,204,284 - +0.3
4,204,284 - -0.4
4,204,284 - +0.8
4,204,351 + -1.0
4,204,351 + +1.4
4,204,351 + -1.5
4,204,351 + +0.9
4,204,352 - -0.9
4,204,352 - -0.6
4,204,365 + +0.5
4,204,365 + -0.3
4,204,365 + -0.6
4,204,365 + -1.8
4,204,365 + +0.2
4,204,365 + -0.2
4,204,366 - -0.3
4,204,366 - -1.0
4,204,410 + +0.3
4,204,410 + -0.2
4,204,411 - -0.6
4,204,411 - +0.4
4,204,411 - +0.4
4,204,504 + +1.3
4,204,504 + -0.3
4,204,504 + +0.1
4,204,504 + -1.0
4,204,504 + +0.3
4,204,504 + +0.4
4,204,504 + +0.3
4,204,504 + -0.2
4,204,504 + -0.4
4,204,504 + +0.0
4,204,505 - -0.7
4,204,505 - +1.1
4,204,505 - -0.3
4,204,505 - -0.4
4,204,505 - +1.4
4,204,505 - +0.5
4,204,505 - -0.2
4,204,505 - -1.1
4,204,505 - +0.1
4,204,505 - -0.3
4,204,505 - -0.1
4,204,505 - +1.7
4,204,505 - +0.9
4,204,687 + OH686_20600 0.18 -0.5
4,204,702 + OH686_20600 0.19 -0.4
4,204,702 + OH686_20600 0.19 +0.9
4,204,707 + OH686_20600 0.19 +0.0
4,204,717 + OH686_20600 0.20 -0.8
4,204,718 - OH686_20600 0.20 +0.4
4,204,718 - OH686_20600 0.20 +0.1
4,204,718 - OH686_20600 0.20 -0.8
4,204,798 + OH686_20600 0.25 -0.3
4,204,799 - OH686_20600 0.25 -0.3
4,204,799 - OH686_20600 0.25 -0.9
4,204,852 + OH686_20600 0.28 -0.1
4,204,852 + OH686_20600 0.28 +0.3
4,204,852 + OH686_20600 0.28 -0.3
4,204,852 + OH686_20600 0.28 -0.4
4,204,852 + OH686_20600 0.28 -0.5
4,204,852 + OH686_20600 0.28 +0.1
4,204,852 + OH686_20600 0.28 -0.1
4,204,852 + OH686_20600 0.28 -0.2
4,204,853 - OH686_20600 0.28 -0.6
4,204,984 + OH686_20600 0.37 -0.6
4,204,984 + OH686_20600 0.37 -0.4
4,204,985 - OH686_20600 0.37 -0.1
4,204,985 - OH686_20600 0.37 -0.6
4,204,985 - OH686_20600 0.37 -0.4
4,204,985 - OH686_20600 0.37 -0.0
4,205,062 + OH686_20600 0.42 -0.3
4,205,063 - OH686_20600 0.42 -0.6
4,205,063 - OH686_20600 0.42 -0.6

Or see this region's nucleotide sequence