Strain Fitness in Pseudomonas sp. S08-1 around OH686_20405

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20400 and OH686_20405 overlap by 4 nucleotidesOH686_20405 and OH686_20410 are separated by 316 nucleotides OH686_20400: OH686_20400 - Ferric iron ABC transporter, ATP-binding protein, at 4,166,356 to 4,167,459 _20400 OH686_20405: OH686_20405 - ornithine carbamoyltransferase, at 4,167,456 to 4,168,376 _20405 OH686_20410: OH686_20410 - Formate dehydrogenase-O, major subunit , at 4,168,693 to 4,170,801 _20410 Position (kb) 4167 4168 4169Strain fitness (log2 ratio) -2 -1 0 1at 4166.464 kb on + strandat 4166.464 kb on + strandat 4166.465 kb on - strandat 4166.465 kb on - strandat 4166.465 kb on - strandat 4166.465 kb on - strandat 4166.530 kb on + strand, within OH686_20400at 4166.531 kb on - strand, within OH686_20400at 4166.531 kb on - strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.742 kb on - strand, within OH686_20400at 4166.742 kb on - strand, within OH686_20400at 4166.742 kb on - strand, within OH686_20400at 4166.789 kb on + strand, within OH686_20400at 4166.789 kb on + strand, within OH686_20400at 4166.789 kb on + strand, within OH686_20400at 4166.790 kb on - strand, within OH686_20400at 4166.790 kb on - strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4167.191 kb on + strand, within OH686_20400at 4167.191 kb on + strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400at 4167.658 kb on + strand, within OH686_20405at 4167.658 kb on + strand, within OH686_20405at 4167.821 kb on - strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.877 kb on + strand, within OH686_20405at 4167.878 kb on - strand, within OH686_20405at 4167.878 kb on - strand, within OH686_20405at 4167.878 kb on - strand, within OH686_20405at 4167.878 kb on - strand, within OH686_20405at 4167.878 kb on - strand, within OH686_20405at 4167.878 kb on - strand, within OH686_20405at 4167.963 kb on - strand, within OH686_20405at 4168.060 kb on + strand, within OH686_20405at 4168.060 kb on + strand, within OH686_20405at 4168.060 kb on + strand, within OH686_20405at 4168.060 kb on + strand, within OH686_20405at 4168.060 kb on + strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.061 kb on - strand, within OH686_20405at 4168.064 kb on + strand, within OH686_20405at 4168.064 kb on + strand, within OH686_20405at 4168.065 kb on - strand, within OH686_20405at 4168.065 kb on - strand, within OH686_20405at 4168.386 kb on + strandat 4168.386 kb on + strandat 4168.386 kb on + strandat 4168.386 kb on + strandat 4168.386 kb on + strandat 4168.386 kb on + strandat 4168.387 kb on - strandat 4168.387 kb on - strandat 4168.387 kb on - strandat 4168.387 kb on - strandat 4168.387 kb on - strandat 4168.387 kb on - strandat 4168.391 kb on + strandat 4168.391 kb on + strandat 4168.391 kb on + strandat 4168.392 kb on - strandat 4168.392 kb on - strandat 4168.392 kb on - strandat 4168.392 kb on - strandat 4168.488 kb on + strandat 4168.491 kb on - strandat 4168.516 kb on + strandat 4168.577 kb on + strandat 4168.578 kb on - strandat 4168.636 kb on + strandat 4168.636 kb on + strandat 4168.636 kb on + strandat 4168.637 kb on - strandat 4168.637 kb on - strandat 4168.637 kb on - strandat 4168.654 kb on + strandat 4168.654 kb on + strandat 4168.655 kb on - strandat 4168.687 kb on + strandat 4168.688 kb on - strandat 4168.688 kb on - strandat 4168.688 kb on - strandat 4168.688 kb on - strandat 4168.688 kb on - strandat 4168.836 kb on + strandat 4168.836 kb on + strandat 4168.836 kb on + strandat 4168.836 kb on + strandat 4168.836 kb on + strandat 4168.837 kb on - strandat 4168.837 kb on - strandat 4168.837 kb on - strandat 4168.837 kb on - strandat 4168.837 kb on - strandat 4169.014 kb on + strand, within OH686_20410at 4169.014 kb on + strand, within OH686_20410at 4169.015 kb on - strand, within OH686_20410at 4169.015 kb on - strand, within OH686_20410at 4169.015 kb on - strand, within OH686_20410at 4169.041 kb on + strand, within OH686_20410at 4169.041 kb on + strand, within OH686_20410at 4169.042 kb on - strand, within OH686_20410at 4169.042 kb on - strand, within OH686_20410at 4169.042 kb on - strand, within OH686_20410at 4169.042 kb on - strand, within OH686_20410at 4169.042 kb on - strand, within OH686_20410at 4169.042 kb on - strand, within OH686_20410at 4169.042 kb on - strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.065 kb on + strand, within OH686_20410at 4169.066 kb on - strand, within OH686_20410at 4169.066 kb on - strand, within OH686_20410at 4169.066 kb on - strand, within OH686_20410at 4169.066 kb on - strand, within OH686_20410at 4169.066 kb on - strand, within OH686_20410at 4169.066 kb on - strand, within OH686_20410at 4169.066 kb on - strand, within OH686_20410at 4169.143 kb on + strand, within OH686_20410at 4169.143 kb on + strand, within OH686_20410at 4169.143 kb on + strand, within OH686_20410at 4169.143 kb on + strand, within OH686_20410at 4169.144 kb on - strand, within OH686_20410at 4169.144 kb on - strand, within OH686_20410at 4169.144 kb on - strand, within OH686_20410at 4169.144 kb on - strand, within OH686_20410at 4169.144 kb on - strand, within OH686_20410at 4169.152 kb on + strand, within OH686_20410at 4169.152 kb on + strand, within OH686_20410at 4169.152 kb on + strand, within OH686_20410at 4169.152 kb on + strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410at 4169.153 kb on - strand, within OH686_20410

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,166,464 + -1.1
4,166,464 + -0.9
4,166,465 - -0.4
4,166,465 - +1.3
4,166,465 - -1.3
4,166,465 - -0.6
4,166,530 + OH686_20400 0.16 -2.2
4,166,531 - OH686_20400 0.16 -0.4
4,166,531 - OH686_20400 0.16 +0.1
4,166,609 + OH686_20400 0.23 -0.4
4,166,609 + OH686_20400 0.23 -1.0
4,166,609 + OH686_20400 0.23 +0.4
4,166,609 + OH686_20400 0.23 -0.3
4,166,609 + OH686_20400 0.23 -1.0
4,166,609 + OH686_20400 0.23 -1.8
4,166,609 + OH686_20400 0.23 +0.2
4,166,610 - OH686_20400 0.23 +0.6
4,166,610 - OH686_20400 0.23 -0.1
4,166,610 - OH686_20400 0.23 +0.0
4,166,610 - OH686_20400 0.23 -1.4
4,166,610 - OH686_20400 0.23 -1.2
4,166,610 - OH686_20400 0.23 -0.2
4,166,610 - OH686_20400 0.23 -1.8
4,166,610 - OH686_20400 0.23 -1.5
4,166,610 - OH686_20400 0.23 +0.6
4,166,610 - OH686_20400 0.23 -0.4
4,166,610 - OH686_20400 0.23 -0.6
4,166,610 - OH686_20400 0.23 -0.3
4,166,610 - OH686_20400 0.23 +0.1
4,166,667 - OH686_20400 0.28 -0.7
4,166,667 - OH686_20400 0.28 -0.5
4,166,667 - OH686_20400 0.28 -0.7
4,166,667 - OH686_20400 0.28 -0.3
4,166,667 - OH686_20400 0.28 +0.5
4,166,741 + OH686_20400 0.35 -1.3
4,166,741 + OH686_20400 0.35 +0.6
4,166,741 + OH686_20400 0.35 -1.1
4,166,741 + OH686_20400 0.35 +1.4
4,166,741 + OH686_20400 0.35 +0.7
4,166,741 + OH686_20400 0.35 -0.2
4,166,741 + OH686_20400 0.35 -0.9
4,166,742 - OH686_20400 0.35 -0.6
4,166,742 - OH686_20400 0.35 +0.6
4,166,742 - OH686_20400 0.35 -0.7
4,166,789 + OH686_20400 0.39 -1.1
4,166,789 + OH686_20400 0.39 -0.9
4,166,789 + OH686_20400 0.39 -1.4
4,166,790 - OH686_20400 0.39 -0.6
4,166,790 - OH686_20400 0.39 -0.3
4,166,798 + OH686_20400 0.40 +1.4
4,166,798 + OH686_20400 0.40 +0.2
4,166,798 + OH686_20400 0.40 -0.1
4,166,798 + OH686_20400 0.40 -0.8
4,166,798 + OH686_20400 0.40 -1.9
4,166,798 + OH686_20400 0.40 -1.2
4,166,798 + OH686_20400 0.40 -1.4
4,166,798 + OH686_20400 0.40 -0.3
4,166,798 + OH686_20400 0.40 +0.5
4,166,799 - OH686_20400 0.40 +0.2
4,166,799 - OH686_20400 0.40 +0.0
4,166,799 - OH686_20400 0.40 -1.3
4,166,799 - OH686_20400 0.40 +0.1
4,166,799 - OH686_20400 0.40 -0.1
4,166,799 - OH686_20400 0.40 -0.5
4,166,799 - OH686_20400 0.40 -0.9
4,166,799 - OH686_20400 0.40 +0.9
4,167,191 + OH686_20400 0.76 -1.3
4,167,191 + OH686_20400 0.76 -0.9
4,167,192 - OH686_20400 0.76 +0.6
4,167,192 - OH686_20400 0.76 -1.1
4,167,192 - OH686_20400 0.76 -0.3
4,167,192 - OH686_20400 0.76 -0.3
4,167,658 + OH686_20405 0.22 -1.1
4,167,658 + OH686_20405 0.22 -1.3
4,167,821 - OH686_20405 0.40 -1.3
4,167,877 + OH686_20405 0.46 -1.6
4,167,877 + OH686_20405 0.46 -1.0
4,167,877 + OH686_20405 0.46 -0.1
4,167,877 + OH686_20405 0.46 -2.0
4,167,877 + OH686_20405 0.46 -0.6
4,167,877 + OH686_20405 0.46 -0.8
4,167,877 + OH686_20405 0.46 -2.6
4,167,877 + OH686_20405 0.46 -0.9
4,167,878 - OH686_20405 0.46 -2.0
4,167,878 - OH686_20405 0.46 +1.3
4,167,878 - OH686_20405 0.46 -2.0
4,167,878 - OH686_20405 0.46 +0.4
4,167,878 - OH686_20405 0.46 -0.3
4,167,878 - OH686_20405 0.46 -0.4
4,167,963 - OH686_20405 0.55 -1.4
4,168,060 + OH686_20405 0.66 -1.2
4,168,060 + OH686_20405 0.66 +0.7
4,168,060 + OH686_20405 0.66 -2.1
4,168,060 + OH686_20405 0.66 -0.9
4,168,060 + OH686_20405 0.66 -1.2
4,168,061 - OH686_20405 0.66 -0.6
4,168,061 - OH686_20405 0.66 -0.5
4,168,061 - OH686_20405 0.66 -0.9
4,168,061 - OH686_20405 0.66 -1.1
4,168,061 - OH686_20405 0.66 -0.1
4,168,061 - OH686_20405 0.66 -1.1
4,168,061 - OH686_20405 0.66 +0.1
4,168,061 - OH686_20405 0.66 +0.6
4,168,064 + OH686_20405 0.66 -2.3
4,168,064 + OH686_20405 0.66 -2.4
4,168,065 - OH686_20405 0.66 -1.6
4,168,065 - OH686_20405 0.66 -0.0
4,168,386 + -0.1
4,168,386 + -0.8
4,168,386 + -0.5
4,168,386 + -0.1
4,168,386 + +0.3
4,168,386 + -1.0
4,168,387 - -0.3
4,168,387 - +0.1
4,168,387 - -0.4
4,168,387 - +1.0
4,168,387 - +0.4
4,168,387 - -2.0
4,168,391 + -0.5
4,168,391 + -0.1
4,168,391 + +1.4
4,168,392 - -1.0
4,168,392 - +0.7
4,168,392 - -0.5
4,168,392 - -0.5
4,168,488 + +0.8
4,168,491 - -1.0
4,168,516 + +0.7
4,168,577 + -0.2
4,168,578 - +0.7
4,168,636 + +0.4
4,168,636 + +0.3
4,168,636 + +0.2
4,168,637 - -0.3
4,168,637 - +0.1
4,168,637 - +0.0
4,168,654 + -0.6
4,168,654 + -0.8
4,168,655 - -0.4
4,168,687 + +0.3
4,168,688 - +0.9
4,168,688 - -0.2
4,168,688 - -0.4
4,168,688 - -0.1
4,168,688 - -0.1
4,168,836 + +1.0
4,168,836 + -0.2
4,168,836 + -0.5
4,168,836 + +1.5
4,168,836 + -0.3
4,168,837 - +0.1
4,168,837 - -0.4
4,168,837 - +0.0
4,168,837 - -0.6
4,168,837 - -0.3
4,169,014 + OH686_20410 0.15 +0.2
4,169,014 + OH686_20410 0.15 -1.2
4,169,015 - OH686_20410 0.15 -0.0
4,169,015 - OH686_20410 0.15 +0.6
4,169,015 - OH686_20410 0.15 -0.4
4,169,041 + OH686_20410 0.17 -0.1
4,169,041 + OH686_20410 0.17 +0.4
4,169,042 - OH686_20410 0.17 +0.3
4,169,042 - OH686_20410 0.17 -0.3
4,169,042 - OH686_20410 0.17 +0.3
4,169,042 - OH686_20410 0.17 -0.9
4,169,042 - OH686_20410 0.17 +1.4
4,169,042 - OH686_20410 0.17 -0.1
4,169,042 - OH686_20410 0.17 +0.0
4,169,065 + OH686_20410 0.18 +0.2
4,169,065 + OH686_20410 0.18 -0.2
4,169,065 + OH686_20410 0.18 -0.4
4,169,065 + OH686_20410 0.18 +0.6
4,169,065 + OH686_20410 0.18 +0.4
4,169,065 + OH686_20410 0.18 -1.1
4,169,065 + OH686_20410 0.18 -1.7
4,169,065 + OH686_20410 0.18 +0.4
4,169,065 + OH686_20410 0.18 +0.3
4,169,066 - OH686_20410 0.18 -0.2
4,169,066 - OH686_20410 0.18 +0.7
4,169,066 - OH686_20410 0.18 +0.1
4,169,066 - OH686_20410 0.18 -0.4
4,169,066 - OH686_20410 0.18 -0.9
4,169,066 - OH686_20410 0.18 +0.2
4,169,066 - OH686_20410 0.18 -0.4
4,169,143 + OH686_20410 0.21 -1.0
4,169,143 + OH686_20410 0.21 -0.0
4,169,143 + OH686_20410 0.21 +0.4
4,169,143 + OH686_20410 0.21 +0.5
4,169,144 - OH686_20410 0.21 +0.3
4,169,144 - OH686_20410 0.21 +0.2
4,169,144 - OH686_20410 0.21 +0.2
4,169,144 - OH686_20410 0.21 -0.1
4,169,144 - OH686_20410 0.21 -0.1
4,169,152 + OH686_20410 0.22 -0.4
4,169,152 + OH686_20410 0.22 -0.1
4,169,152 + OH686_20410 0.22 +0.7
4,169,152 + OH686_20410 0.22 -0.6
4,169,153 - OH686_20410 0.22 -0.2
4,169,153 - OH686_20410 0.22 -0.0
4,169,153 - OH686_20410 0.22 -0.4
4,169,153 - OH686_20410 0.22 -0.0
4,169,153 - OH686_20410 0.22 -0.4
4,169,153 - OH686_20410 0.22 +0.2
4,169,153 - OH686_20410 0.22 -0.3
4,169,153 - OH686_20410 0.22 +0.4
4,169,153 - OH686_20410 0.22 -1.1

Or see this region's nucleotide sequence