Strain Fitness in Pseudomonas sp. S08-1 around OH686_20230

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_20225 and OH686_20230 are separated by 145 nucleotidesOH686_20230 and OH686_20235 are separated by 60 nucleotides OH686_20225: OH686_20225 - NnrS protein, at 4,131,144 to 4,132,328 _20225 OH686_20230: OH686_20230 - hypothetical protein, at 4,132,474 to 4,132,929 _20230 OH686_20235: OH686_20235 - hypothetical protein, at 4,132,990 to 4,133,898 _20235 Position (kb) 4132 4133Strain fitness (log2 ratio) -2 -1 0 1 2at 4131.627 kb on + strand, within OH686_20225at 4131.627 kb on + strand, within OH686_20225at 4131.627 kb on + strand, within OH686_20225at 4131.627 kb on + strand, within OH686_20225at 4131.628 kb on - strand, within OH686_20225at 4131.738 kb on - strand, within OH686_20225at 4131.924 kb on + strand, within OH686_20225at 4131.975 kb on + strand, within OH686_20225at 4131.975 kb on + strand, within OH686_20225at 4131.976 kb on - strand, within OH686_20225at 4131.976 kb on - strand, within OH686_20225at 4131.976 kb on - strand, within OH686_20225at 4132.121 kb on + strand, within OH686_20225at 4132.281 kb on + strandat 4132.281 kb on + strandat 4132.282 kb on - strandat 4132.309 kb on + strandat 4132.309 kb on + strandat 4132.309 kb on + strandat 4132.309 kb on + strandat 4132.309 kb on + strandat 4132.310 kb on - strandat 4132.400 kb on + strandat 4132.400 kb on + strandat 4132.400 kb on + strandat 4132.401 kb on - strandat 4132.401 kb on - strandat 4132.401 kb on - strandat 4132.401 kb on - strandat 4132.404 kb on + strandat 4132.510 kb on + strandat 4132.510 kb on + strandat 4132.510 kb on + strandat 4132.511 kb on - strandat 4132.511 kb on - strandat 4132.882 kb on + strand, within OH686_20230at 4132.883 kb on - strand, within OH686_20230at 4132.883 kb on - strand, within OH686_20230at 4132.883 kb on - strand, within OH686_20230at 4132.883 kb on - strand, within OH686_20230at 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.921 kb on + strandat 4132.922 kb on - strandat 4132.922 kb on - strandat 4132.922 kb on - strandat 4132.940 kb on - strandat 4132.940 kb on - strandat 4132.940 kb on - strandat 4132.940 kb on - strandat 4132.940 kb on - strandat 4132.970 kb on + strandat 4132.971 kb on - strandat 4132.995 kb on + strandat 4132.995 kb on + strandat 4132.995 kb on + strandat 4132.995 kb on + strandat 4132.995 kb on + strandat 4132.995 kb on + strandat 4133.004 kb on + strandat 4133.004 kb on + strandat 4133.004 kb on + strandat 4133.005 kb on - strandat 4133.005 kb on - strandat 4133.005 kb on - strandat 4133.005 kb on - strandat 4133.044 kb on + strandat 4133.044 kb on + strandat 4133.045 kb on - strandat 4133.045 kb on - strandat 4133.059 kb on + strandat 4133.059 kb on + strandat 4133.059 kb on + strandat 4133.059 kb on + strandat 4133.059 kb on + strandat 4133.060 kb on - strandat 4133.088 kb on - strand, within OH686_20235at 4133.088 kb on - strand, within OH686_20235at 4133.088 kb on - strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.303 kb on + strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.304 kb on - strand, within OH686_20235at 4133.348 kb on + strand, within OH686_20235at 4133.348 kb on + strand, within OH686_20235at 4133.348 kb on + strand, within OH686_20235at 4133.348 kb on + strand, within OH686_20235at 4133.348 kb on + strand, within OH686_20235at 4133.349 kb on - strand, within OH686_20235at 4133.349 kb on - strand, within OH686_20235at 4133.349 kb on - strand, within OH686_20235at 4133.349 kb on - strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.513 kb on + strand, within OH686_20235at 4133.514 kb on - strand, within OH686_20235at 4133.514 kb on - strand, within OH686_20235at 4133.514 kb on - strand, within OH686_20235at 4133.514 kb on - strand, within OH686_20235at 4133.514 kb on - strand, within OH686_20235at 4133.514 kb on - strand, within OH686_20235at 4133.514 kb on - strand, within OH686_20235at 4133.558 kb on + strand, within OH686_20235at 4133.559 kb on - strand, within OH686_20235at 4133.559 kb on - strand, within OH686_20235at 4133.559 kb on - strand, within OH686_20235at 4133.559 kb on - strand, within OH686_20235at 4133.576 kb on + strand, within OH686_20235at 4133.576 kb on + strand, within OH686_20235at 4133.576 kb on + strand, within OH686_20235at 4133.773 kb on + strand, within OH686_20235at 4133.774 kb on - strand, within OH686_20235at 4133.774 kb on - strand, within OH686_20235at 4133.774 kb on - strand, within OH686_20235at 4133.810 kb on + strandat 4133.810 kb on + strandat 4133.810 kb on + strandat 4133.810 kb on + strandat 4133.810 kb on + strandat 4133.811 kb on - strandat 4133.811 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
4,131,627 + OH686_20225 0.41 -2.1
4,131,627 + OH686_20225 0.41 -0.4
4,131,627 + OH686_20225 0.41 -0.6
4,131,627 + OH686_20225 0.41 -0.4
4,131,628 - OH686_20225 0.41 +0.9
4,131,738 - OH686_20225 0.50 +2.2
4,131,924 + OH686_20225 0.66 +0.3
4,131,975 + OH686_20225 0.70 +0.3
4,131,975 + OH686_20225 0.70 +0.2
4,131,976 - OH686_20225 0.70 +0.8
4,131,976 - OH686_20225 0.70 +0.5
4,131,976 - OH686_20225 0.70 -0.3
4,132,121 + OH686_20225 0.82 +0.2
4,132,281 + +1.1
4,132,281 + +0.1
4,132,282 - -0.3
4,132,309 + -1.3
4,132,309 + +1.0
4,132,309 + -0.9
4,132,309 + +0.2
4,132,309 + +0.2
4,132,310 - +0.1
4,132,400 + -0.4
4,132,400 + -1.4
4,132,400 + +0.6
4,132,401 - +0.1
4,132,401 - +0.2
4,132,401 - -0.7
4,132,401 - +0.7
4,132,404 + +0.7
4,132,510 + -0.3
4,132,510 + +0.1
4,132,510 + -0.8
4,132,511 - +0.4
4,132,511 - +0.2
4,132,882 + OH686_20230 0.89 -1.8
4,132,883 - OH686_20230 0.90 -1.7
4,132,883 - OH686_20230 0.90 -0.1
4,132,883 - OH686_20230 0.90 -2.0
4,132,883 - OH686_20230 0.90 +0.2
4,132,921 + +0.6
4,132,921 + +0.7
4,132,921 + +1.4
4,132,921 + +1.0
4,132,921 + -1.4
4,132,921 + +0.5
4,132,921 + +0.3
4,132,921 + -1.0
4,132,921 + -0.1
4,132,922 - +0.1
4,132,922 - -0.1
4,132,922 - -0.3
4,132,940 - -0.4
4,132,940 - -1.3
4,132,940 - -0.4
4,132,940 - -0.6
4,132,940 - -0.6
4,132,970 + +0.1
4,132,971 - +0.4
4,132,995 + +0.9
4,132,995 + -0.3
4,132,995 + +0.6
4,132,995 + +0.1
4,132,995 + +0.5
4,132,995 + +0.1
4,133,004 + +0.1
4,133,004 + +0.7
4,133,004 + -1.1
4,133,005 - -0.2
4,133,005 - -0.1
4,133,005 - -0.3
4,133,005 - -0.3
4,133,044 + +0.5
4,133,044 + +0.4
4,133,045 - +0.3
4,133,045 - -1.3
4,133,059 + +0.7
4,133,059 + -0.5
4,133,059 + -0.1
4,133,059 + -0.4
4,133,059 + -0.3
4,133,060 - -1.4
4,133,088 - OH686_20235 0.11 -0.4
4,133,088 - OH686_20235 0.11 -0.8
4,133,088 - OH686_20235 0.11 +0.0
4,133,303 + OH686_20235 0.34 -0.1
4,133,303 + OH686_20235 0.34 +0.6
4,133,303 + OH686_20235 0.34 -0.6
4,133,303 + OH686_20235 0.34 -1.7
4,133,303 + OH686_20235 0.34 +1.2
4,133,303 + OH686_20235 0.34 -0.1
4,133,303 + OH686_20235 0.34 -0.1
4,133,303 + OH686_20235 0.34 -0.3
4,133,303 + OH686_20235 0.34 +0.4
4,133,303 + OH686_20235 0.34 -0.1
4,133,303 + OH686_20235 0.34 -0.4
4,133,303 + OH686_20235 0.34 -0.8
4,133,303 + OH686_20235 0.34 -0.5
4,133,303 + OH686_20235 0.34 +0.4
4,133,304 - OH686_20235 0.35 -0.1
4,133,304 - OH686_20235 0.35 -2.0
4,133,304 - OH686_20235 0.35 +1.2
4,133,304 - OH686_20235 0.35 -0.3
4,133,304 - OH686_20235 0.35 +1.2
4,133,304 - OH686_20235 0.35 -0.5
4,133,304 - OH686_20235 0.35 +0.2
4,133,304 - OH686_20235 0.35 -0.9
4,133,304 - OH686_20235 0.35 -1.3
4,133,304 - OH686_20235 0.35 -0.2
4,133,304 - OH686_20235 0.35 +1.1
4,133,304 - OH686_20235 0.35 -0.9
4,133,304 - OH686_20235 0.35 -0.6
4,133,304 - OH686_20235 0.35 +1.7
4,133,304 - OH686_20235 0.35 -0.2
4,133,304 - OH686_20235 0.35 -0.5
4,133,304 - OH686_20235 0.35 +0.8
4,133,304 - OH686_20235 0.35 -0.2
4,133,304 - OH686_20235 0.35 +0.3
4,133,304 - OH686_20235 0.35 -0.2
4,133,304 - OH686_20235 0.35 +0.6
4,133,304 - OH686_20235 0.35 +0.1
4,133,348 + OH686_20235 0.39 -0.4
4,133,348 + OH686_20235 0.39 -0.9
4,133,348 + OH686_20235 0.39 +0.2
4,133,348 + OH686_20235 0.39 +0.1
4,133,348 + OH686_20235 0.39 -0.5
4,133,349 - OH686_20235 0.39 +0.4
4,133,349 - OH686_20235 0.39 +0.7
4,133,349 - OH686_20235 0.39 +0.3
4,133,349 - OH686_20235 0.39 +0.7
4,133,513 + OH686_20235 0.58 +0.9
4,133,513 + OH686_20235 0.58 -0.1
4,133,513 + OH686_20235 0.58 -0.2
4,133,513 + OH686_20235 0.58 +0.6
4,133,513 + OH686_20235 0.58 -0.2
4,133,513 + OH686_20235 0.58 +0.9
4,133,513 + OH686_20235 0.58 -0.1
4,133,513 + OH686_20235 0.58 -0.4
4,133,513 + OH686_20235 0.58 +0.0
4,133,514 - OH686_20235 0.58 -2.0
4,133,514 - OH686_20235 0.58 -1.6
4,133,514 - OH686_20235 0.58 -0.2
4,133,514 - OH686_20235 0.58 -0.8
4,133,514 - OH686_20235 0.58 -0.6
4,133,514 - OH686_20235 0.58 +0.3
4,133,514 - OH686_20235 0.58 +0.1
4,133,558 + OH686_20235 0.62 -0.8
4,133,559 - OH686_20235 0.63 -0.5
4,133,559 - OH686_20235 0.63 +0.0
4,133,559 - OH686_20235 0.63 -0.4
4,133,559 - OH686_20235 0.63 -1.4
4,133,576 + OH686_20235 0.64 -0.5
4,133,576 + OH686_20235 0.64 -0.4
4,133,576 + OH686_20235 0.64 -0.5
4,133,773 + OH686_20235 0.86 +0.5
4,133,774 - OH686_20235 0.86 +0.1
4,133,774 - OH686_20235 0.86 -0.7
4,133,774 - OH686_20235 0.86 +0.9
4,133,810 + +0.2
4,133,810 + -0.6
4,133,810 + -0.6
4,133,810 + -0.2
4,133,810 + -0.9
4,133,811 - -0.6
4,133,811 - +0.5

Or see this region's nucleotide sequence