Strain Fitness in Pseudomonas sp. S08-1 around OH686_17600

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17595 and OH686_17600 are separated by 155 nucleotidesOH686_17600 and OH686_17605 overlap by 20 nucleotidesOH686_17605 and OH686_17610 overlap by 10 nucleotides OH686_17595: OH686_17595 - GMP synthase [glutamine-hydrolyzing], amidotransferase subunit / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit , at 3,674,537 to 3,676,114 _17595 OH686_17600: OH686_17600 - hypothetical protein, at 3,676,270 to 3,676,905 _17600 OH686_17605: OH686_17605 - hypothetical protein, at 3,676,886 to 3,677,641 _17605 OH686_17610: OH686_17610 - Endonuclease, at 3,677,632 to 3,678,363 _17610 Position (kb) 3676 3677Strain fitness (log2 ratio) -2 -1 0 1 2at 3676.161 kb on + strandat 3676.161 kb on + strandat 3676.161 kb on + strandat 3676.161 kb on + strandat 3676.162 kb on - strandat 3676.162 kb on - strandat 3676.162 kb on - strandat 3676.163 kb on + strandat 3676.163 kb on + strandat 3676.163 kb on + strandat 3676.163 kb on + strandat 3676.163 kb on + strandat 3676.164 kb on - strandat 3676.164 kb on - strandat 3676.164 kb on - strandat 3676.164 kb on - strandat 3676.164 kb on - strandat 3676.164 kb on - strandat 3676.164 kb on - strandat 3676.207 kb on + strandat 3676.327 kb on + strandat 3676.395 kb on + strand, within OH686_17600at 3676.396 kb on - strand, within OH686_17600at 3676.396 kb on - strand, within OH686_17600at 3676.864 kb on + strandat 3676.864 kb on + strandat 3676.864 kb on + strandat 3676.864 kb on + strandat 3676.864 kb on + strandat 3676.865 kb on - strandat 3676.865 kb on - strandat 3676.865 kb on - strandat 3676.970 kb on + strand, within OH686_17605at 3676.980 kb on + strand, within OH686_17605at 3676.980 kb on + strand, within OH686_17605at 3676.980 kb on + strand, within OH686_17605at 3676.980 kb on + strand, within OH686_17605at 3676.980 kb on + strand, within OH686_17605at 3676.981 kb on - strand, within OH686_17605at 3676.981 kb on - strand, within OH686_17605at 3676.981 kb on - strand, within OH686_17605at 3677.129 kb on + strand, within OH686_17605at 3677.130 kb on - strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.200 kb on + strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.201 kb on - strand, within OH686_17605at 3677.330 kb on + strand, within OH686_17605at 3677.330 kb on + strand, within OH686_17605at 3677.453 kb on + strand, within OH686_17605at 3677.453 kb on + strand, within OH686_17605at 3677.453 kb on + strand, within OH686_17605at 3677.453 kb on + strand, within OH686_17605at 3677.454 kb on - strand, within OH686_17605at 3677.454 kb on - strand, within OH686_17605at 3677.454 kb on - strand, within OH686_17605at 3677.454 kb on - strand, within OH686_17605at 3677.663 kb on + strandat 3677.663 kb on + strandat 3677.664 kb on - strandat 3677.664 kb on - strandat 3677.664 kb on - strandat 3677.664 kb on - strandat 3677.664 kb on - strandat 3677.664 kb on - strandat 3677.664 kb on - strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.666 kb on + strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strandat 3677.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,676,161 + -0.0
3,676,161 + +0.0
3,676,161 + +0.6
3,676,161 + +0.1
3,676,162 - +0.5
3,676,162 - +0.6
3,676,162 - -1.6
3,676,163 + +0.4
3,676,163 + -0.2
3,676,163 + +0.4
3,676,163 + -0.4
3,676,163 + -0.1
3,676,164 - +0.0
3,676,164 - -0.1
3,676,164 - -0.6
3,676,164 - +0.4
3,676,164 - +0.0
3,676,164 - -2.0
3,676,164 - -0.0
3,676,207 + +1.2
3,676,327 + +0.2
3,676,395 + OH686_17600 0.20 +0.4
3,676,396 - OH686_17600 0.20 -0.7
3,676,396 - OH686_17600 0.20 +1.4
3,676,864 + -0.4
3,676,864 + +0.3
3,676,864 + +0.4
3,676,864 + -0.6
3,676,864 + +0.3
3,676,865 - +0.5
3,676,865 - +0.3
3,676,865 - +0.6
3,676,970 + OH686_17605 0.11 -0.4
3,676,980 + OH686_17605 0.12 +0.4
3,676,980 + OH686_17605 0.12 +0.2
3,676,980 + OH686_17605 0.12 +1.6
3,676,980 + OH686_17605 0.12 +0.0
3,676,980 + OH686_17605 0.12 -0.5
3,676,981 - OH686_17605 0.13 +0.7
3,676,981 - OH686_17605 0.13 -0.4
3,676,981 - OH686_17605 0.13 +0.2
3,677,129 + OH686_17605 0.32 +0.2
3,677,130 - OH686_17605 0.32 +0.0
3,677,200 + OH686_17605 0.42 -1.4
3,677,200 + OH686_17605 0.42 -0.0
3,677,200 + OH686_17605 0.42 +1.0
3,677,200 + OH686_17605 0.42 -0.1
3,677,200 + OH686_17605 0.42 +0.4
3,677,200 + OH686_17605 0.42 +0.5
3,677,200 + OH686_17605 0.42 +0.2
3,677,200 + OH686_17605 0.42 +0.2
3,677,200 + OH686_17605 0.42 +0.0
3,677,200 + OH686_17605 0.42 -0.6
3,677,200 + OH686_17605 0.42 +1.3
3,677,200 + OH686_17605 0.42 +0.6
3,677,200 + OH686_17605 0.42 -0.2
3,677,200 + OH686_17605 0.42 -0.5
3,677,200 + OH686_17605 0.42 +1.4
3,677,201 - OH686_17605 0.42 -0.5
3,677,201 - OH686_17605 0.42 +1.1
3,677,201 - OH686_17605 0.42 -1.2
3,677,201 - OH686_17605 0.42 +1.1
3,677,201 - OH686_17605 0.42 -0.2
3,677,201 - OH686_17605 0.42 -0.1
3,677,201 - OH686_17605 0.42 -0.1
3,677,201 - OH686_17605 0.42 -0.2
3,677,201 - OH686_17605 0.42 +0.5
3,677,201 - OH686_17605 0.42 +0.2
3,677,201 - OH686_17605 0.42 -0.6
3,677,201 - OH686_17605 0.42 -0.1
3,677,201 - OH686_17605 0.42 -1.5
3,677,330 + OH686_17605 0.59 +0.2
3,677,330 + OH686_17605 0.59 -0.7
3,677,453 + OH686_17605 0.75 -1.4
3,677,453 + OH686_17605 0.75 +1.2
3,677,453 + OH686_17605 0.75 +0.0
3,677,453 + OH686_17605 0.75 +0.5
3,677,454 - OH686_17605 0.75 -1.7
3,677,454 - OH686_17605 0.75 -1.5
3,677,454 - OH686_17605 0.75 +0.7
3,677,454 - OH686_17605 0.75 -0.5
3,677,663 + +0.4
3,677,663 + +0.2
3,677,664 - -1.8
3,677,664 - -0.7
3,677,664 - +1.0
3,677,664 - +0.0
3,677,664 - +0.4
3,677,664 - -0.3
3,677,664 - +0.4
3,677,666 + -0.0
3,677,666 + -0.2
3,677,666 + +0.2
3,677,666 + +2.3
3,677,666 + -0.1
3,677,666 + -1.6
3,677,666 + -0.8
3,677,666 + -1.8
3,677,666 + -0.7
3,677,666 + -0.0
3,677,666 + -0.9
3,677,666 + -0.1
3,677,666 + -0.8
3,677,666 + +0.3
3,677,666 + -0.3
3,677,666 + +0.2
3,677,666 + +0.4
3,677,666 + +0.6
3,677,666 + +0.4
3,677,666 + +0.3
3,677,667 - +0.4
3,677,667 - +0.7
3,677,667 - +0.2
3,677,667 - -0.3
3,677,667 - +0.5
3,677,667 - -0.7
3,677,667 - +1.1
3,677,667 - -0.1
3,677,667 - -1.4
3,677,667 - -0.3
3,677,667 - -0.3
3,677,667 - -1.2
3,677,667 - -0.3
3,677,667 - -0.6
3,677,667 - +0.1
3,677,667 - +0.5
3,677,667 - +0.3
3,677,667 - -0.6
3,677,667 - +0.9
3,677,667 - +2.4
3,677,667 - -0.6
3,677,667 - -0.1

Or see this region's nucleotide sequence