Strain Fitness in Pseudomonas sp. S08-1 around OH686_17435

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17430 and OH686_17435 are separated by 152 nucleotidesOH686_17435 and OH686_17440 are separated by 60 nucleotides OH686_17430: OH686_17430 - tRNA-guanine transglycosylase, at 3,642,360 to 3,643,487 _17430 OH686_17435: OH686_17435 - preprotein translocase, YajC subunit, at 3,643,640 to 3,643,981 _17435 OH686_17440: OH686_17440 - Protein translocase subunit SecD, at 3,644,042 to 3,645,913 _17440 Position (kb) 3643 3644Strain fitness (log2 ratio) -2 -1 0 1 2at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.696 kb on + strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.697 kb on - strand, within OH686_17430at 3642.757 kb on + strand, within OH686_17430at 3642.757 kb on + strand, within OH686_17430at 3642.757 kb on + strand, within OH686_17430at 3642.757 kb on + strand, within OH686_17430at 3642.758 kb on - strand, within OH686_17430at 3642.758 kb on - strand, within OH686_17430at 3642.758 kb on - strand, within OH686_17430at 3642.758 kb on - strand, within OH686_17430at 3642.758 kb on - strand, within OH686_17430at 3642.758 kb on - strand, within OH686_17430at 3642.758 kb on - strand, within OH686_17430at 3643.086 kb on + strand, within OH686_17430at 3643.086 kb on + strand, within OH686_17430at 3643.086 kb on + strand, within OH686_17430at 3643.087 kb on - strand, within OH686_17430at 3643.087 kb on - strand, within OH686_17430at 3643.087 kb on - strand, within OH686_17430at 3643.099 kb on + strand, within OH686_17430at 3643.099 kb on + strand, within OH686_17430at 3643.275 kb on + strand, within OH686_17430at 3643.275 kb on + strand, within OH686_17430at 3643.275 kb on + strand, within OH686_17430at 3643.275 kb on + strand, within OH686_17430at 3643.275 kb on + strand, within OH686_17430at 3643.276 kb on - strand, within OH686_17430at 3643.276 kb on - strand, within OH686_17430at 3643.276 kb on - strand, within OH686_17430at 3643.276 kb on - strand, within OH686_17430at 3643.276 kb on - strand, within OH686_17430at 3643.276 kb on - strand, within OH686_17430at 3643.276 kb on - strand, within OH686_17430at 3643.303 kb on - strand, within OH686_17430at 3643.319 kb on + strand, within OH686_17430at 3643.352 kb on + strand, within OH686_17430at 3643.352 kb on + strand, within OH686_17430at 3643.352 kb on + strand, within OH686_17430at 3643.418 kb on + strandat 3643.418 kb on + strandat 3643.418 kb on + strandat 3643.418 kb on + strandat 3643.419 kb on - strandat 3643.419 kb on - strandat 3643.419 kb on - strandat 3643.419 kb on - strandat 3643.419 kb on - strandat 3643.419 kb on - strandat 3643.419 kb on - strandat 3643.419 kb on - strandat 3643.446 kb on + strandat 3643.446 kb on + strandat 3643.446 kb on + strandat 3643.446 kb on + strandat 3643.447 kb on - strandat 3643.463 kb on - strandat 3643.537 kb on + strandat 3643.537 kb on + strandat 3643.537 kb on + strandat 3643.537 kb on + strandat 3643.537 kb on + strandat 3643.537 kb on + strandat 3643.538 kb on - strandat 3643.538 kb on - strandat 3643.538 kb on - strandat 3643.538 kb on - strandat 3643.595 kb on + strandat 3643.628 kb on + strandat 3643.664 kb on + strandat 3643.664 kb on + strandat 3643.754 kb on + strand, within OH686_17435at 3643.754 kb on + strand, within OH686_17435at 3643.836 kb on + strand, within OH686_17435at 3643.836 kb on + strand, within OH686_17435at 3643.836 kb on + strand, within OH686_17435at 3643.836 kb on + strand, within OH686_17435at 3643.979 kb on + strandat 3643.979 kb on + strandat 3643.979 kb on + strandat 3644.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,642,696 + OH686_17430 0.30 +0.5
3,642,696 + OH686_17430 0.30 +0.0
3,642,696 + OH686_17430 0.30 +0.2
3,642,696 + OH686_17430 0.30 -0.8
3,642,696 + OH686_17430 0.30 -0.4
3,642,696 + OH686_17430 0.30 -0.6
3,642,696 + OH686_17430 0.30 -0.6
3,642,696 + OH686_17430 0.30 +0.6
3,642,696 + OH686_17430 0.30 +0.3
3,642,696 + OH686_17430 0.30 -1.1
3,642,697 - OH686_17430 0.30 -2.0
3,642,697 - OH686_17430 0.30 -0.7
3,642,697 - OH686_17430 0.30 -0.3
3,642,697 - OH686_17430 0.30 -1.2
3,642,697 - OH686_17430 0.30 +1.0
3,642,697 - OH686_17430 0.30 +0.4
3,642,697 - OH686_17430 0.30 -1.6
3,642,697 - OH686_17430 0.30 -0.7
3,642,697 - OH686_17430 0.30 +0.7
3,642,697 - OH686_17430 0.30 -0.8
3,642,757 + OH686_17430 0.35 +0.1
3,642,757 + OH686_17430 0.35 +1.7
3,642,757 + OH686_17430 0.35 -1.4
3,642,757 + OH686_17430 0.35 +0.3
3,642,758 - OH686_17430 0.35 -0.6
3,642,758 - OH686_17430 0.35 -1.8
3,642,758 - OH686_17430 0.35 -0.3
3,642,758 - OH686_17430 0.35 -0.0
3,642,758 - OH686_17430 0.35 +0.3
3,642,758 - OH686_17430 0.35 +0.3
3,642,758 - OH686_17430 0.35 +0.3
3,643,086 + OH686_17430 0.64 -2.1
3,643,086 + OH686_17430 0.64 -1.1
3,643,086 + OH686_17430 0.64 -2.4
3,643,087 - OH686_17430 0.64 -0.0
3,643,087 - OH686_17430 0.64 +0.9
3,643,087 - OH686_17430 0.64 -0.6
3,643,099 + OH686_17430 0.66 +1.2
3,643,099 + OH686_17430 0.66 +0.0
3,643,275 + OH686_17430 0.81 +1.4
3,643,275 + OH686_17430 0.81 -0.7
3,643,275 + OH686_17430 0.81 +1.7
3,643,275 + OH686_17430 0.81 -0.8
3,643,275 + OH686_17430 0.81 -0.5
3,643,276 - OH686_17430 0.81 -0.3
3,643,276 - OH686_17430 0.81 -0.6
3,643,276 - OH686_17430 0.81 -0.4
3,643,276 - OH686_17430 0.81 -0.7
3,643,276 - OH686_17430 0.81 +0.9
3,643,276 - OH686_17430 0.81 +0.9
3,643,276 - OH686_17430 0.81 -0.4
3,643,303 - OH686_17430 0.84 -0.3
3,643,319 + OH686_17430 0.85 -0.1
3,643,352 + OH686_17430 0.88 +0.6
3,643,352 + OH686_17430 0.88 -0.3
3,643,352 + OH686_17430 0.88 -0.1
3,643,418 + -1.1
3,643,418 + +1.3
3,643,418 + +0.0
3,643,418 + -1.0
3,643,419 - +0.5
3,643,419 - +0.4
3,643,419 - +0.4
3,643,419 - +1.3
3,643,419 - -0.1
3,643,419 - -0.3
3,643,419 - -0.6
3,643,419 - +0.7
3,643,446 + -2.3
3,643,446 + -1.4
3,643,446 + -1.1
3,643,446 + -1.4
3,643,447 - +0.7
3,643,463 - -0.5
3,643,537 + +0.2
3,643,537 + +0.1
3,643,537 + -0.9
3,643,537 + +1.0
3,643,537 + -1.4
3,643,537 + -0.2
3,643,538 - -1.3
3,643,538 - +0.0
3,643,538 - +0.2
3,643,538 - +0.5
3,643,595 + -0.0
3,643,628 + -0.4
3,643,664 + +0.6
3,643,664 + -0.6
3,643,754 + OH686_17435 0.33 +0.5
3,643,754 + OH686_17435 0.33 +0.6
3,643,836 + OH686_17435 0.57 -1.6
3,643,836 + OH686_17435 0.57 -1.0
3,643,836 + OH686_17435 0.57 +1.0
3,643,836 + OH686_17435 0.57 +0.4
3,643,979 + +0.5
3,643,979 + +2.2
3,643,979 + +0.9
3,644,028 + -0.3

Or see this region's nucleotide sequence