Strain Fitness in Pseudomonas sp. S08-1 around OH686_14665

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14655 and OH686_14660 are separated by 89 nucleotidesOH686_14660 and OH686_14665 are separated by 1 nucleotidesOH686_14665 and OH686_14670 are separated by 34 nucleotidesOH686_14670 and OH686_14675 are separated by 44 nucleotides OH686_14655: OH686_14655 - phosphoglycerate mutase (2,3-diphosphoglycerate-independent), at 3,081,951 to 3,083,486 _14655 OH686_14660: OH686_14660 - Rhodanese-related sulfurtransferase YibN, at 3,083,576 to 3,084,040 _14660 OH686_14665: OH686_14665 - glutaredoxin 3, at 3,084,042 to 3,084,296 _14665 OH686_14670: OH686_14670 - protein-export chaperone SecB, at 3,084,331 to 3,084,798 _14670 OH686_14675: OH686_14675 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 3,084,843 to 3,085,304 _14675 Position (kb) 3084 3085Strain fitness (log2 ratio) -2 -1 0 1at 3083.531 kb on - strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.590 kb on + strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.591 kb on - strandat 3083.592 kb on + strandat 3083.592 kb on + strandat 3083.592 kb on + strandat 3083.592 kb on + strandat 3083.608 kb on - strandat 3083.657 kb on - strand, within OH686_14660at 3083.663 kb on + strand, within OH686_14660at 3083.663 kb on + strand, within OH686_14660at 3083.663 kb on + strand, within OH686_14660at 3083.663 kb on + strand, within OH686_14660at 3083.663 kb on + strand, within OH686_14660at 3083.664 kb on - strand, within OH686_14660at 3083.664 kb on - strand, within OH686_14660at 3083.664 kb on - strand, within OH686_14660at 3083.664 kb on - strand, within OH686_14660at 3083.664 kb on - strand, within OH686_14660at 3083.664 kb on - strand, within OH686_14660at 3083.758 kb on + strand, within OH686_14660at 3083.758 kb on + strand, within OH686_14660at 3083.759 kb on - strand, within OH686_14660at 3083.883 kb on + strand, within OH686_14660at 3083.883 kb on + strand, within OH686_14660at 3083.884 kb on - strand, within OH686_14660at 3083.884 kb on - strand, within OH686_14660at 3084.060 kb on + strandat 3084.060 kb on + strandat 3084.060 kb on + strandat 3084.060 kb on + strandat 3084.060 kb on + strandat 3084.061 kb on - strandat 3084.061 kb on - strandat 3084.061 kb on - strandat 3084.061 kb on - strandat 3084.082 kb on - strand, within OH686_14665at 3084.082 kb on - strand, within OH686_14665at 3084.082 kb on - strand, within OH686_14665at 3084.314 kb on + strandat 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.391 kb on + strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.392 kb on - strand, within OH686_14670at 3084.608 kb on + strand, within OH686_14670at 3084.608 kb on + strand, within OH686_14670at 3084.608 kb on + strand, within OH686_14670at 3084.608 kb on + strand, within OH686_14670at 3084.609 kb on - strand, within OH686_14670at 3084.609 kb on - strand, within OH686_14670at 3084.667 kb on + strand, within OH686_14670at 3084.692 kb on + strand, within OH686_14670at 3084.692 kb on + strand, within OH686_14670at 3084.692 kb on + strand, within OH686_14670at 3084.693 kb on - strand, within OH686_14670at 3084.693 kb on - strand, within OH686_14670at 3084.751 kb on + strand, within OH686_14670at 3084.751 kb on + strand, within OH686_14670at 3084.751 kb on + strand, within OH686_14670at 3084.752 kb on - strandat 3084.752 kb on - strandat 3084.752 kb on - strandat 3084.880 kb on + strandat 3084.880 kb on + strandat 3084.880 kb on + strandat 3084.880 kb on + strandat 3084.880 kb on + strandat 3084.881 kb on - strandat 3084.881 kb on - strandat 3084.881 kb on - strandat 3084.975 kb on + strand, within OH686_14675at 3084.976 kb on - strand, within OH686_14675at 3084.976 kb on - strand, within OH686_14675at 3084.976 kb on - strand, within OH686_14675at 3085.019 kb on + strand, within OH686_14675at 3085.019 kb on + strand, within OH686_14675at 3085.019 kb on + strand, within OH686_14675at 3085.020 kb on - strand, within OH686_14675at 3085.048 kb on + strand, within OH686_14675at 3085.049 kb on - strand, within OH686_14675at 3085.049 kb on - strand, within OH686_14675at 3085.049 kb on - strand, within OH686_14675at 3085.059 kb on - strand, within OH686_14675at 3085.059 kb on - strand, within OH686_14675at 3085.059 kb on - strand, within OH686_14675at 3085.064 kb on + strand, within OH686_14675at 3085.065 kb on - strand, within OH686_14675at 3085.080 kb on + strand, within OH686_14675at 3085.080 kb on + strand, within OH686_14675at 3085.106 kb on + strand, within OH686_14675at 3085.107 kb on - strand, within OH686_14675at 3085.107 kb on - strand, within OH686_14675at 3085.107 kb on - strand, within OH686_14675at 3085.107 kb on - strand, within OH686_14675at 3085.107 kb on - strand, within OH686_14675at 3085.153 kb on + strand, within OH686_14675at 3085.153 kb on + strand, within OH686_14675at 3085.154 kb on - strand, within OH686_14675

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,083,531 - -0.6
3,083,590 + +0.1
3,083,590 + +0.5
3,083,590 + -0.0
3,083,590 + +0.1
3,083,590 + -1.7
3,083,590 + +0.6
3,083,590 + -0.7
3,083,590 + -0.3
3,083,590 + +0.2
3,083,590 + -0.9
3,083,591 - +0.7
3,083,591 - -0.6
3,083,591 - -0.3
3,083,591 - -0.3
3,083,591 - -0.1
3,083,591 - +0.0
3,083,591 - -1.2
3,083,591 - +0.8
3,083,591 - +0.6
3,083,592 + -0.8
3,083,592 + +0.6
3,083,592 + +0.0
3,083,592 + +0.4
3,083,608 - -0.8
3,083,657 - OH686_14660 0.17 -0.8
3,083,663 + OH686_14660 0.19 +0.0
3,083,663 + OH686_14660 0.19 -0.1
3,083,663 + OH686_14660 0.19 -0.1
3,083,663 + OH686_14660 0.19 -0.6
3,083,663 + OH686_14660 0.19 -0.4
3,083,664 - OH686_14660 0.19 -0.2
3,083,664 - OH686_14660 0.19 +0.4
3,083,664 - OH686_14660 0.19 -0.6
3,083,664 - OH686_14660 0.19 -0.6
3,083,664 - OH686_14660 0.19 +0.2
3,083,664 - OH686_14660 0.19 +0.1
3,083,758 + OH686_14660 0.39 +0.5
3,083,758 + OH686_14660 0.39 +0.8
3,083,759 - OH686_14660 0.39 -0.0
3,083,883 + OH686_14660 0.66 +0.1
3,083,883 + OH686_14660 0.66 +0.8
3,083,884 - OH686_14660 0.66 +0.5
3,083,884 - OH686_14660 0.66 +0.5
3,084,060 + -0.4
3,084,060 + -0.9
3,084,060 + +0.3
3,084,060 + -1.7
3,084,060 + -0.1
3,084,061 - +1.2
3,084,061 - +0.3
3,084,061 - +0.6
3,084,061 - -0.4
3,084,082 - OH686_14665 0.16 -0.4
3,084,082 - OH686_14665 0.16 -1.2
3,084,082 - OH686_14665 0.16 -1.5
3,084,314 + -0.4
3,084,391 + OH686_14670 0.13 -0.1
3,084,391 + OH686_14670 0.13 +0.1
3,084,391 + OH686_14670 0.13 -0.1
3,084,391 + OH686_14670 0.13 -0.2
3,084,391 + OH686_14670 0.13 -0.4
3,084,391 + OH686_14670 0.13 -0.6
3,084,391 + OH686_14670 0.13 +0.8
3,084,391 + OH686_14670 0.13 +1.3
3,084,391 + OH686_14670 0.13 -1.6
3,084,391 + OH686_14670 0.13 -0.5
3,084,391 + OH686_14670 0.13 -0.3
3,084,391 + OH686_14670 0.13 +0.2
3,084,391 + OH686_14670 0.13 +0.2
3,084,391 + OH686_14670 0.13 -1.8
3,084,391 + OH686_14670 0.13 -1.6
3,084,391 + OH686_14670 0.13 +0.5
3,084,391 + OH686_14670 0.13 +0.2
3,084,391 + OH686_14670 0.13 -0.2
3,084,391 + OH686_14670 0.13 -1.0
3,084,391 + OH686_14670 0.13 -0.7
3,084,391 + OH686_14670 0.13 -0.9
3,084,391 + OH686_14670 0.13 +0.4
3,084,391 + OH686_14670 0.13 +0.2
3,084,391 + OH686_14670 0.13 -0.8
3,084,392 - OH686_14670 0.13 +1.3
3,084,392 - OH686_14670 0.13 -0.4
3,084,392 - OH686_14670 0.13 +1.3
3,084,392 - OH686_14670 0.13 +1.1
3,084,392 - OH686_14670 0.13 -0.1
3,084,392 - OH686_14670 0.13 -0.1
3,084,392 - OH686_14670 0.13 +0.5
3,084,392 - OH686_14670 0.13 -0.5
3,084,392 - OH686_14670 0.13 -0.6
3,084,392 - OH686_14670 0.13 +0.0
3,084,392 - OH686_14670 0.13 +0.2
3,084,392 - OH686_14670 0.13 -1.5
3,084,392 - OH686_14670 0.13 +0.1
3,084,392 - OH686_14670 0.13 +0.0
3,084,392 - OH686_14670 0.13 -0.0
3,084,392 - OH686_14670 0.13 +0.3
3,084,392 - OH686_14670 0.13 -1.2
3,084,392 - OH686_14670 0.13 -0.4
3,084,392 - OH686_14670 0.13 -2.5
3,084,392 - OH686_14670 0.13 -0.6
3,084,392 - OH686_14670 0.13 -0.2
3,084,392 - OH686_14670 0.13 +0.2
3,084,608 + OH686_14670 0.59 -1.3
3,084,608 + OH686_14670 0.59 +0.6
3,084,608 + OH686_14670 0.59 -0.7
3,084,608 + OH686_14670 0.59 +0.2
3,084,609 - OH686_14670 0.59 -0.4
3,084,609 - OH686_14670 0.59 +0.2
3,084,667 + OH686_14670 0.72 +0.7
3,084,692 + OH686_14670 0.77 -1.9
3,084,692 + OH686_14670 0.77 -0.7
3,084,692 + OH686_14670 0.77 +0.1
3,084,693 - OH686_14670 0.77 -0.7
3,084,693 - OH686_14670 0.77 -0.6
3,084,751 + OH686_14670 0.90 -0.4
3,084,751 + OH686_14670 0.90 -0.2
3,084,751 + OH686_14670 0.90 -0.2
3,084,752 - -0.3
3,084,752 - -0.3
3,084,752 - -0.1
3,084,880 + -1.4
3,084,880 + +0.6
3,084,880 + -0.0
3,084,880 + -1.0
3,084,880 + +0.4
3,084,881 - +0.6
3,084,881 - +0.2
3,084,881 - -0.2
3,084,975 + OH686_14675 0.29 -0.7
3,084,976 - OH686_14675 0.29 -1.1
3,084,976 - OH686_14675 0.29 -1.8
3,084,976 - OH686_14675 0.29 +1.0
3,085,019 + OH686_14675 0.38 +0.0
3,085,019 + OH686_14675 0.38 -0.3
3,085,019 + OH686_14675 0.38 -1.8
3,085,020 - OH686_14675 0.38 +0.1
3,085,048 + OH686_14675 0.44 +1.4
3,085,049 - OH686_14675 0.45 -1.5
3,085,049 - OH686_14675 0.45 +0.4
3,085,049 - OH686_14675 0.45 +0.1
3,085,059 - OH686_14675 0.47 -0.3
3,085,059 - OH686_14675 0.47 +0.4
3,085,059 - OH686_14675 0.47 +0.1
3,085,064 + OH686_14675 0.48 -0.9
3,085,065 - OH686_14675 0.48 -0.1
3,085,080 + OH686_14675 0.51 +0.8
3,085,080 + OH686_14675 0.51 -0.1
3,085,106 + OH686_14675 0.57 -0.8
3,085,107 - OH686_14675 0.57 +0.1
3,085,107 - OH686_14675 0.57 +0.4
3,085,107 - OH686_14675 0.57 +1.0
3,085,107 - OH686_14675 0.57 -1.0
3,085,107 - OH686_14675 0.57 -1.1
3,085,153 + OH686_14675 0.67 +0.3
3,085,153 + OH686_14675 0.67 -0.2
3,085,154 - OH686_14675 0.67 -0.5

Or see this region's nucleotide sequence