Strain Fitness in Pseudomonas sp. S08-1 around OH686_14250

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14240 and OH686_14245 overlap by 4 nucleotidesOH686_14245 and OH686_14250 overlap by 1 nucleotidesOH686_14250 and OH686_14255 are separated by 115 nucleotides OH686_14240: OH686_14240 - signal recognition particle-docking protein FtsY, at 2,975,461 to 2,976,600 _14240 OH686_14245: OH686_14245 - cell division ATP-binding protein FtsE, at 2,976,597 to 2,977,265 _14245 OH686_14250: OH686_14250 - Cell-division-associated, ABC-transporter-like signaling protein FtsX, at 2,977,265 to 2,978,275 _14250 OH686_14255: OH686_14255 - alternative sigma factor RpoH, at 2,978,391 to 2,979,245 _14255 Position (kb) 2977 2978 2979Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2977.285 kb on + strandat 2977.286 kb on - strandat 2977.286 kb on - strandat 2977.286 kb on - strandat 2977.286 kb on - strandat 2977.286 kb on - strandat 2977.336 kb on + strandat 2977.336 kb on + strandat 2977.336 kb on + strandat 2977.337 kb on - strandat 2977.337 kb on - strandat 2977.562 kb on + strand, within OH686_14250at 2977.563 kb on - strand, within OH686_14250at 2977.563 kb on - strand, within OH686_14250at 2977.563 kb on - strand, within OH686_14250at 2977.788 kb on + strand, within OH686_14250at 2977.789 kb on - strand, within OH686_14250at 2977.932 kb on + strand, within OH686_14250at 2977.933 kb on - strand, within OH686_14250at 2978.015 kb on + strand, within OH686_14250at 2978.015 kb on + strand, within OH686_14250at 2978.015 kb on + strand, within OH686_14250at 2978.016 kb on - strand, within OH686_14250at 2978.016 kb on - strand, within OH686_14250at 2978.016 kb on - strand, within OH686_14250at 2978.016 kb on - strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.036 kb on + strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.037 kb on - strand, within OH686_14250at 2978.038 kb on + strand, within OH686_14250at 2978.051 kb on + strand, within OH686_14250at 2978.052 kb on - strand, within OH686_14250at 2978.052 kb on - strand, within OH686_14250at 2978.052 kb on - strand, within OH686_14250at 2978.124 kb on + strand, within OH686_14250at 2978.125 kb on - strand, within OH686_14250at 2978.125 kb on - strand, within OH686_14250at 2978.219 kb on + strandat 2978.219 kb on + strandat 2978.219 kb on + strandat 2978.219 kb on + strandat 2978.219 kb on + strandat 2978.220 kb on - strandat 2978.220 kb on - strandat 2978.221 kb on + strandat 2978.221 kb on + strandat 2978.221 kb on + strandat 2978.221 kb on + strandat 2978.221 kb on + strandat 2978.222 kb on - strandat 2978.222 kb on - strandat 2978.222 kb on - strandat 2978.222 kb on - strandat 2978.222 kb on - strandat 2978.222 kb on - strandat 2978.222 kb on - strandat 2978.281 kb on + strandat 2978.282 kb on - strandat 2978.355 kb on + strandat 2978.356 kb on - strandat 2978.356 kb on - strandat 2978.356 kb on - strandat 2978.356 kb on - strandat 2978.356 kb on - strandat 2978.356 kb on - strandat 2978.422 kb on + strandat 2978.422 kb on + strandat 2978.422 kb on + strandat 2978.422 kb on + strandat 2978.422 kb on + strandat 2978.422 kb on + strandat 2978.423 kb on - strandat 2979.243 kb on + strandat 2979.243 kb on + strandat 2979.243 kb on + strandat 2979.244 kb on - strandat 2979.244 kb on - strandat 2979.244 kb on - strandat 2979.244 kb on - strandat 2979.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,977,285 + +0.0
2,977,286 - -0.9
2,977,286 - -0.2
2,977,286 - -1.1
2,977,286 - -1.0
2,977,286 - -1.8
2,977,336 + -1.0
2,977,336 + -0.8
2,977,336 + -0.6
2,977,337 - -1.9
2,977,337 - -1.8
2,977,562 + OH686_14250 0.29 -1.2
2,977,563 - OH686_14250 0.29 -2.0
2,977,563 - OH686_14250 0.29 +0.8
2,977,563 - OH686_14250 0.29 -0.2
2,977,788 + OH686_14250 0.52 -0.8
2,977,789 - OH686_14250 0.52 -1.4
2,977,932 + OH686_14250 0.66 -0.4
2,977,933 - OH686_14250 0.66 +0.2
2,978,015 + OH686_14250 0.74 -2.2
2,978,015 + OH686_14250 0.74 -1.5
2,978,015 + OH686_14250 0.74 -0.6
2,978,016 - OH686_14250 0.74 -2.3
2,978,016 - OH686_14250 0.74 +0.4
2,978,016 - OH686_14250 0.74 -1.6
2,978,016 - OH686_14250 0.74 -1.6
2,978,036 + OH686_14250 0.76 -1.2
2,978,036 + OH686_14250 0.76 -1.3
2,978,036 + OH686_14250 0.76 -0.1
2,978,036 + OH686_14250 0.76 -1.1
2,978,036 + OH686_14250 0.76 -1.7
2,978,036 + OH686_14250 0.76 -1.5
2,978,036 + OH686_14250 0.76 -0.6
2,978,036 + OH686_14250 0.76 -0.3
2,978,036 + OH686_14250 0.76 -1.7
2,978,036 + OH686_14250 0.76 -0.6
2,978,036 + OH686_14250 0.76 +0.0
2,978,036 + OH686_14250 0.76 -2.2
2,978,036 + OH686_14250 0.76 -0.2
2,978,036 + OH686_14250 0.76 -1.5
2,978,036 + OH686_14250 0.76 -1.2
2,978,036 + OH686_14250 0.76 -0.7
2,978,036 + OH686_14250 0.76 -0.6
2,978,036 + OH686_14250 0.76 -1.4
2,978,036 + OH686_14250 0.76 -0.6
2,978,036 + OH686_14250 0.76 -1.4
2,978,037 - OH686_14250 0.76 -0.2
2,978,037 - OH686_14250 0.76 +0.2
2,978,037 - OH686_14250 0.76 -1.5
2,978,037 - OH686_14250 0.76 -0.9
2,978,037 - OH686_14250 0.76 +0.3
2,978,037 - OH686_14250 0.76 -0.9
2,978,037 - OH686_14250 0.76 -1.5
2,978,037 - OH686_14250 0.76 -1.4
2,978,037 - OH686_14250 0.76 -3.6
2,978,037 - OH686_14250 0.76 -0.8
2,978,037 - OH686_14250 0.76 -1.3
2,978,037 - OH686_14250 0.76 -0.8
2,978,037 - OH686_14250 0.76 -1.8
2,978,037 - OH686_14250 0.76 -0.6
2,978,037 - OH686_14250 0.76 -1.4
2,978,037 - OH686_14250 0.76 -0.8
2,978,037 - OH686_14250 0.76 -0.6
2,978,038 + OH686_14250 0.76 -0.7
2,978,051 + OH686_14250 0.78 -1.0
2,978,052 - OH686_14250 0.78 -0.7
2,978,052 - OH686_14250 0.78 -1.2
2,978,052 - OH686_14250 0.78 -1.0
2,978,124 + OH686_14250 0.85 +0.4
2,978,125 - OH686_14250 0.85 -0.7
2,978,125 - OH686_14250 0.85 -1.2
2,978,219 + -0.6
2,978,219 + -1.1
2,978,219 + -0.4
2,978,219 + -0.6
2,978,219 + -1.1
2,978,220 - -1.3
2,978,220 - -1.1
2,978,221 + -0.7
2,978,221 + -0.8
2,978,221 + -1.1
2,978,221 + -1.8
2,978,221 + -2.0
2,978,222 - -0.4
2,978,222 - +0.4
2,978,222 - -0.4
2,978,222 - -1.3
2,978,222 - +1.4
2,978,222 - -1.8
2,978,222 - -2.0
2,978,281 + -0.3
2,978,282 - -0.1
2,978,355 + +0.1
2,978,356 - +0.1
2,978,356 - -0.3
2,978,356 - +0.5
2,978,356 - +1.4
2,978,356 - -0.0
2,978,356 - -0.2
2,978,422 + -1.1
2,978,422 + -0.8
2,978,422 + -1.8
2,978,422 + -0.2
2,978,422 + +2.1
2,978,422 + +0.0
2,978,423 - -0.6
2,979,243 + +0.6
2,979,243 + -0.1
2,979,243 + +0.5
2,979,244 - -0.1
2,979,244 - -0.6
2,979,244 - -0.1
2,979,244 - -0.8
2,979,244 - +0.4

Or see this region's nucleotide sequence