Strain Fitness in Pseudomonas sp. S08-1 around OH686_10095

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_10085 and OH686_10090 are separated by 0 nucleotidesOH686_10090 and OH686_10095 are separated by 96 nucleotidesOH686_10095 and OH686_10100 overlap by 4 nucleotides OH686_10085: OH686_10085 - arginine--tRNA ligase, at 2,071,654 to 2,073,393 _10085 OH686_10090: OH686_10090 - Cell division protein, at 2,073,394 to 2,074,083 _10090 OH686_10095: OH686_10095 - ATP-dependent protease HslVU, peptidase subunit, at 2,074,180 to 2,074,710 _10095 OH686_10100: OH686_10100 - ATP-dependent protease HslVU, ATPase subunit, at 2,074,707 to 2,076,074 _10100 Position (kb) 2074 2075Strain fitness (log2 ratio) -2 -1 0 1 2at 2073.391 kb on + strandat 2073.391 kb on + strandat 2073.391 kb on + strandat 2073.391 kb on + strandat 2073.391 kb on + strandat 2073.391 kb on + strandat 2073.991 kb on + strand, within OH686_10090at 2074.050 kb on + strandat 2074.051 kb on - strandat 2074.061 kb on + strandat 2074.062 kb on - strandat 2074.062 kb on - strandat 2074.062 kb on - strandat 2074.062 kb on - strandat 2074.062 kb on - strandat 2074.062 kb on - strandat 2074.295 kb on - strand, within OH686_10095at 2074.295 kb on - strand, within OH686_10095at 2074.397 kb on + strand, within OH686_10095at 2074.668 kb on + strandat 2074.669 kb on - strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.731 kb on + strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2074.732 kb on - strandat 2075.001 kb on + strand, within OH686_10100at 2075.001 kb on + strand, within OH686_10100at 2075.001 kb on + strand, within OH686_10100at 2075.001 kb on + strand, within OH686_10100at 2075.001 kb on + strand, within OH686_10100at 2075.001 kb on + strand, within OH686_10100at 2075.002 kb on - strand, within OH686_10100at 2075.002 kb on - strand, within OH686_10100at 2075.002 kb on - strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.254 kb on + strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.255 kb on - strand, within OH686_10100at 2075.256 kb on - strand, within OH686_10100

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,073,391 + -0.6
2,073,391 + -1.3
2,073,391 + +0.3
2,073,391 + -0.3
2,073,391 + -0.3
2,073,391 + -0.3
2,073,991 + OH686_10090 0.87 +0.1
2,074,050 + +0.3
2,074,051 - -0.1
2,074,061 + +0.2
2,074,062 - -2.0
2,074,062 - -0.2
2,074,062 - +0.1
2,074,062 - -1.2
2,074,062 - -0.2
2,074,062 - +0.2
2,074,295 - OH686_10095 0.22 +1.2
2,074,295 - OH686_10095 0.22 -0.4
2,074,397 + OH686_10095 0.41 +0.7
2,074,668 + +0.3
2,074,669 - -0.3
2,074,731 + -0.4
2,074,731 + +0.5
2,074,731 + +0.7
2,074,731 + -0.8
2,074,731 + -0.3
2,074,731 + +0.8
2,074,731 + +0.3
2,074,731 + -0.0
2,074,731 + +0.5
2,074,731 + +0.3
2,074,731 + -0.7
2,074,731 + +0.2
2,074,731 + +0.9
2,074,731 + +0.2
2,074,731 + -0.1
2,074,731 + +0.5
2,074,731 + -0.2
2,074,731 + +0.9
2,074,731 + +0.4
2,074,731 + +0.2
2,074,731 + -0.8
2,074,731 + -0.1
2,074,731 + +0.3
2,074,731 + -0.6
2,074,731 + +1.1
2,074,731 + -1.4
2,074,731 + -0.1
2,074,731 + +0.1
2,074,731 + +0.4
2,074,731 + +0.1
2,074,731 + +0.2
2,074,731 + +1.2
2,074,731 + -0.1
2,074,732 - +0.2
2,074,732 - +0.3
2,074,732 - +0.6
2,074,732 - -0.3
2,074,732 - -1.1
2,074,732 - +0.3
2,074,732 - -0.2
2,074,732 - +0.4
2,074,732 - -1.4
2,074,732 - +0.9
2,074,732 - -0.5
2,074,732 - -0.1
2,074,732 - -0.7
2,074,732 - +0.1
2,074,732 - -1.1
2,074,732 - +1.2
2,074,732 - +0.6
2,074,732 - -0.3
2,074,732 - +0.6
2,074,732 - +0.0
2,074,732 - -1.3
2,074,732 - +0.2
2,074,732 - +0.1
2,074,732 - -0.8
2,074,732 - +0.3
2,074,732 - -1.2
2,074,732 - -0.3
2,074,732 - -0.5
2,074,732 - -0.3
2,074,732 - +0.7
2,074,732 - -0.3
2,074,732 - -0.0
2,074,732 - +1.0
2,074,732 - -2.1
2,074,732 - +0.2
2,074,732 - +1.6
2,074,732 - -0.3
2,075,001 + OH686_10100 0.21 -0.8
2,075,001 + OH686_10100 0.21 +1.2
2,075,001 + OH686_10100 0.21 +0.4
2,075,001 + OH686_10100 0.21 -0.2
2,075,001 + OH686_10100 0.21 +0.1
2,075,001 + OH686_10100 0.21 -1.3
2,075,002 - OH686_10100 0.22 +0.0
2,075,002 - OH686_10100 0.22 -1.7
2,075,002 - OH686_10100 0.22 +0.6
2,075,254 + OH686_10100 0.40 -1.1
2,075,254 + OH686_10100 0.40 -0.4
2,075,254 + OH686_10100 0.40 +0.4
2,075,254 + OH686_10100 0.40 +0.5
2,075,254 + OH686_10100 0.40 +0.2
2,075,254 + OH686_10100 0.40 +0.7
2,075,254 + OH686_10100 0.40 -0.6
2,075,254 + OH686_10100 0.40 +0.7
2,075,254 + OH686_10100 0.40 -0.2
2,075,254 + OH686_10100 0.40 -2.2
2,075,254 + OH686_10100 0.40 +0.0
2,075,254 + OH686_10100 0.40 +1.5
2,075,254 + OH686_10100 0.40 -1.3
2,075,254 + OH686_10100 0.40 -0.1
2,075,254 + OH686_10100 0.40 +0.1
2,075,254 + OH686_10100 0.40 -0.4
2,075,255 - OH686_10100 0.40 -0.8
2,075,255 - OH686_10100 0.40 -0.0
2,075,255 - OH686_10100 0.40 -0.6
2,075,255 - OH686_10100 0.40 -0.3
2,075,255 - OH686_10100 0.40 +2.1
2,075,255 - OH686_10100 0.40 +0.3
2,075,255 - OH686_10100 0.40 -1.3
2,075,255 - OH686_10100 0.40 -0.6
2,075,255 - OH686_10100 0.40 -0.4
2,075,255 - OH686_10100 0.40 -0.7
2,075,255 - OH686_10100 0.40 -0.2
2,075,255 - OH686_10100 0.40 -0.6
2,075,255 - OH686_10100 0.40 +0.6
2,075,255 - OH686_10100 0.40 -0.1
2,075,256 - OH686_10100 0.40 +0.2

Or see this region's nucleotide sequence