Strain Fitness in Pseudomonas sp. S08-1 around OH686_08880

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08875 and OH686_08880 are separated by 1 nucleotidesOH686_08880 and OH686_08885 are separated by 43 nucleotidesOH686_08885 and OH686_08890 are separated by 22 nucleotides OH686_08875: OH686_08875 - Acyl-CoA dehydrogenase, at 1,803,720 to 1,805,369 _08875 OH686_08880: OH686_08880 - Transcriptional regulator, AcrR family, at 1,805,371 to 1,806,006 _08880 OH686_08885: OH686_08885 - CDS, at 1,806,050 to 1,806,211 _08885 OH686_08890: OH686_08890 - hypothetical protein, at 1,806,234 to 1,807,088 _08890 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -2 -1 0 1 2at 1804.597 kb on + strand, within OH686_08875at 1804.597 kb on + strand, within OH686_08875at 1804.597 kb on + strand, within OH686_08875at 1804.597 kb on + strand, within OH686_08875at 1804.597 kb on + strand, within OH686_08875at 1804.597 kb on + strand, within OH686_08875at 1804.597 kb on + strand, within OH686_08875at 1804.597 kb on + strand, within OH686_08875at 1804.598 kb on - strand, within OH686_08875at 1804.598 kb on - strand, within OH686_08875at 1804.598 kb on - strand, within OH686_08875at 1804.598 kb on - strand, within OH686_08875at 1804.598 kb on - strand, within OH686_08875at 1804.598 kb on - strand, within OH686_08875at 1804.598 kb on - strand, within OH686_08875at 1804.666 kb on + strand, within OH686_08875at 1804.666 kb on + strand, within OH686_08875at 1804.666 kb on + strand, within OH686_08875at 1804.666 kb on + strand, within OH686_08875at 1804.667 kb on - strand, within OH686_08875at 1804.667 kb on - strand, within OH686_08875at 1804.732 kb on + strand, within OH686_08875at 1804.732 kb on + strand, within OH686_08875at 1804.733 kb on - strand, within OH686_08875at 1804.733 kb on - strand, within OH686_08875at 1804.778 kb on + strand, within OH686_08875at 1804.873 kb on + strand, within OH686_08875at 1804.873 kb on + strand, within OH686_08875at 1804.873 kb on + strand, within OH686_08875at 1804.873 kb on + strand, within OH686_08875at 1804.874 kb on - strand, within OH686_08875at 1804.874 kb on - strand, within OH686_08875at 1804.874 kb on - strand, within OH686_08875at 1804.948 kb on + strand, within OH686_08875at 1804.948 kb on + strand, within OH686_08875at 1804.948 kb on + strand, within OH686_08875at 1804.948 kb on + strand, within OH686_08875at 1804.949 kb on - strand, within OH686_08875at 1804.949 kb on - strand, within OH686_08875at 1804.949 kb on - strand, within OH686_08875at 1804.949 kb on - strand, within OH686_08875at 1804.949 kb on - strand, within OH686_08875at 1804.949 kb on - strand, within OH686_08875at 1804.949 kb on - strand, within OH686_08875at 1804.999 kb on + strand, within OH686_08875at 1804.999 kb on + strand, within OH686_08875at 1804.999 kb on + strand, within OH686_08875at 1804.999 kb on + strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.000 kb on - strand, within OH686_08875at 1805.098 kb on + strand, within OH686_08875at 1805.098 kb on + strand, within OH686_08875at 1805.099 kb on - strand, within OH686_08875at 1805.222 kb on - strandat 1805.609 kb on + strand, within OH686_08880at 1805.609 kb on + strand, within OH686_08880at 1805.609 kb on + strand, within OH686_08880at 1805.609 kb on + strand, within OH686_08880at 1805.609 kb on + strand, within OH686_08880at 1805.609 kb on + strand, within OH686_08880at 1805.610 kb on - strand, within OH686_08880at 1805.610 kb on - strand, within OH686_08880at 1805.610 kb on - strand, within OH686_08880at 1805.610 kb on - strand, within OH686_08880at 1805.610 kb on - strand, within OH686_08880at 1805.999 kb on + strandat 1805.999 kb on + strandat 1805.999 kb on + strandat 1805.999 kb on + strandat 1805.999 kb on + strandat 1805.999 kb on + strandat 1805.999 kb on + strandat 1806.000 kb on - strandat 1806.104 kb on - strand, within OH686_08885at 1806.315 kb on + strandat 1806.315 kb on + strandat 1806.315 kb on + strandat 1806.315 kb on + strandat 1806.315 kb on + strandat 1806.315 kb on + strandat 1806.316 kb on - strandat 1806.316 kb on - strandat 1806.316 kb on - strandat 1806.316 kb on - strandat 1806.328 kb on + strand, within OH686_08890at 1806.329 kb on - strand, within OH686_08890at 1806.353 kb on + strand, within OH686_08890at 1806.354 kb on - strand, within OH686_08890at 1806.354 kb on - strand, within OH686_08890at 1806.354 kb on - strand, within OH686_08890at 1806.370 kb on + strand, within OH686_08890at 1806.371 kb on - strand, within OH686_08890at 1806.386 kb on + strand, within OH686_08890at 1806.400 kb on - strand, within OH686_08890at 1806.400 kb on - strand, within OH686_08890at 1806.468 kb on - strand, within OH686_08890at 1806.468 kb on - strand, within OH686_08890at 1806.469 kb on + strand, within OH686_08890at 1806.469 kb on + strand, within OH686_08890at 1806.622 kb on - strand, within OH686_08890at 1806.668 kb on + strand, within OH686_08890at 1806.675 kb on - strand, within OH686_08890at 1806.783 kb on - strand, within OH686_08890at 1806.839 kb on + strand, within OH686_08890at 1806.922 kb on + strand, within OH686_08890at 1806.944 kb on - strand, within OH686_08890

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,804,597 + OH686_08875 0.53 -0.0
1,804,597 + OH686_08875 0.53 +1.1
1,804,597 + OH686_08875 0.53 +0.4
1,804,597 + OH686_08875 0.53 -0.8
1,804,597 + OH686_08875 0.53 -0.1
1,804,597 + OH686_08875 0.53 -0.0
1,804,597 + OH686_08875 0.53 -0.1
1,804,597 + OH686_08875 0.53 -1.1
1,804,598 - OH686_08875 0.53 -0.1
1,804,598 - OH686_08875 0.53 +0.1
1,804,598 - OH686_08875 0.53 -0.4
1,804,598 - OH686_08875 0.53 +0.2
1,804,598 - OH686_08875 0.53 +1.0
1,804,598 - OH686_08875 0.53 -0.1
1,804,598 - OH686_08875 0.53 -0.8
1,804,666 + OH686_08875 0.57 +0.0
1,804,666 + OH686_08875 0.57 -0.3
1,804,666 + OH686_08875 0.57 -0.3
1,804,666 + OH686_08875 0.57 -0.0
1,804,667 - OH686_08875 0.57 -0.2
1,804,667 - OH686_08875 0.57 +0.4
1,804,732 + OH686_08875 0.61 -0.8
1,804,732 + OH686_08875 0.61 -0.5
1,804,733 - OH686_08875 0.61 -1.2
1,804,733 - OH686_08875 0.61 +0.3
1,804,778 + OH686_08875 0.64 -0.8
1,804,873 + OH686_08875 0.70 +0.9
1,804,873 + OH686_08875 0.70 -0.1
1,804,873 + OH686_08875 0.70 -0.7
1,804,873 + OH686_08875 0.70 +0.5
1,804,874 - OH686_08875 0.70 -0.4
1,804,874 - OH686_08875 0.70 +0.2
1,804,874 - OH686_08875 0.70 -0.0
1,804,948 + OH686_08875 0.74 +0.5
1,804,948 + OH686_08875 0.74 -0.9
1,804,948 + OH686_08875 0.74 -2.4
1,804,948 + OH686_08875 0.74 +0.2
1,804,949 - OH686_08875 0.74 -0.4
1,804,949 - OH686_08875 0.74 -0.1
1,804,949 - OH686_08875 0.74 -0.2
1,804,949 - OH686_08875 0.74 -0.2
1,804,949 - OH686_08875 0.74 +0.5
1,804,949 - OH686_08875 0.74 +0.8
1,804,949 - OH686_08875 0.74 +0.3
1,804,999 + OH686_08875 0.78 -0.8
1,804,999 + OH686_08875 0.78 +0.3
1,804,999 + OH686_08875 0.78 -1.0
1,804,999 + OH686_08875 0.78 +0.2
1,805,000 - OH686_08875 0.78 +0.2
1,805,000 - OH686_08875 0.78 +0.2
1,805,000 - OH686_08875 0.78 -0.3
1,805,000 - OH686_08875 0.78 -0.8
1,805,000 - OH686_08875 0.78 +0.3
1,805,000 - OH686_08875 0.78 +1.3
1,805,000 - OH686_08875 0.78 -2.1
1,805,000 - OH686_08875 0.78 -0.4
1,805,000 - OH686_08875 0.78 -0.8
1,805,098 + OH686_08875 0.84 -0.1
1,805,098 + OH686_08875 0.84 -1.2
1,805,099 - OH686_08875 0.84 -0.4
1,805,222 - -0.3
1,805,609 + OH686_08880 0.37 +0.2
1,805,609 + OH686_08880 0.37 +0.9
1,805,609 + OH686_08880 0.37 +0.4
1,805,609 + OH686_08880 0.37 -0.2
1,805,609 + OH686_08880 0.37 +2.3
1,805,609 + OH686_08880 0.37 +1.0
1,805,610 - OH686_08880 0.38 +0.1
1,805,610 - OH686_08880 0.38 -0.1
1,805,610 - OH686_08880 0.38 +0.5
1,805,610 - OH686_08880 0.38 +0.5
1,805,610 - OH686_08880 0.38 +0.4
1,805,999 + +0.9
1,805,999 + -0.2
1,805,999 + +0.3
1,805,999 + -0.7
1,805,999 + -0.0
1,805,999 + -0.7
1,805,999 + +0.3
1,806,000 - -0.6
1,806,104 - OH686_08885 0.33 +0.8
1,806,315 + +0.2
1,806,315 + -0.9
1,806,315 + -0.5
1,806,315 + +0.1
1,806,315 + -0.4
1,806,315 + -0.2
1,806,316 - +0.1
1,806,316 - -0.3
1,806,316 - -0.7
1,806,316 - -0.2
1,806,328 + OH686_08890 0.11 -1.2
1,806,329 - OH686_08890 0.11 -0.7
1,806,353 + OH686_08890 0.14 -0.2
1,806,354 - OH686_08890 0.14 +0.2
1,806,354 - OH686_08890 0.14 -1.4
1,806,354 - OH686_08890 0.14 -0.6
1,806,370 + OH686_08890 0.16 +0.4
1,806,371 - OH686_08890 0.16 +0.5
1,806,386 + OH686_08890 0.18 +0.6
1,806,400 - OH686_08890 0.19 -0.4
1,806,400 - OH686_08890 0.19 +0.0
1,806,468 - OH686_08890 0.27 +0.9
1,806,468 - OH686_08890 0.27 -0.7
1,806,469 + OH686_08890 0.27 +0.3
1,806,469 + OH686_08890 0.27 +1.0
1,806,622 - OH686_08890 0.45 -0.1
1,806,668 + OH686_08890 0.51 -0.2
1,806,675 - OH686_08890 0.52 +0.0
1,806,783 - OH686_08890 0.64 -0.5
1,806,839 + OH686_08890 0.71 -0.2
1,806,922 + OH686_08890 0.80 -0.2
1,806,944 - OH686_08890 0.83 -0.4

Or see this region's nucleotide sequence