Strain Fitness in Pseudomonas sp. S08-1 around OH686_07925

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07915 and OH686_07920 are separated by 51 nucleotidesOH686_07920 and OH686_07925 overlap by 4 nucleotidesOH686_07925 and OH686_07930 are separated by 3 nucleotidesOH686_07930 and OH686_07935 are separated by 84 nucleotides OH686_07915: OH686_07915 - glutamyl-tRNA reductase, at 1,617,288 to 1,618,556 _07915 OH686_07920: OH686_07920 - CDS, at 1,618,608 to 1,618,727 _07920 OH686_07925: OH686_07925 - TPR domain protein, at 1,618,724 to 1,620,451 _07925 OH686_07930: OH686_07930 - outer membrane lipoprotein LolB, at 1,620,455 to 1,621,069 _07930 OH686_07935: OH686_07935 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,621,154 to 1,622,029 _07935 Position (kb) 1618 1619 1620 1621Strain fitness (log2 ratio) -3 -2 -1 0 1at 1618.599 kb on - strandat 1618.599 kb on - strandat 1618.599 kb on - strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.724 kb on - strandat 1618.724 kb on - strandat 1618.856 kb on + strandat 1618.856 kb on + strandat 1618.883 kb on + strandat 1618.883 kb on + strandat 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1619.127 kb on - strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.146 kb on + strand, within OH686_07925at 1619.501 kb on + strand, within OH686_07925at 1619.501 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.766 kb on + strand, within OH686_07925at 1619.766 kb on + strand, within OH686_07925at 1619.885 kb on + strand, within OH686_07925at 1619.885 kb on + strand, within OH686_07925at 1619.885 kb on + strand, within OH686_07925at 1619.900 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.005 kb on + strand, within OH686_07925at 1620.119 kb on + strand, within OH686_07925at 1620.119 kb on + strand, within OH686_07925at 1620.214 kb on + strand, within OH686_07925at 1620.233 kb on + strand, within OH686_07925at 1620.233 kb on + strand, within OH686_07925at 1620.233 kb on + strand, within OH686_07925at 1620.233 kb on + strand, within OH686_07925at 1620.233 kb on + strand, within OH686_07925at 1620.233 kb on + strand, within OH686_07925at 1620.234 kb on - strand, within OH686_07925at 1620.234 kb on - strand, within OH686_07925at 1620.234 kb on - strand, within OH686_07925at 1621.067 kb on + strandat 1621.067 kb on + strandat 1621.068 kb on - strandat 1621.068 kb on - strandat 1621.144 kb on + strandat 1621.144 kb on + strandat 1621.144 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,618,599 - +0.3
1,618,599 - -0.2
1,618,599 - +0.4
1,618,719 + -0.5
1,618,719 + +0.7
1,618,719 + -0.2
1,618,719 + -0.3
1,618,719 + +0.4
1,618,719 + -0.0
1,618,720 - +0.4
1,618,720 - -0.2
1,618,720 - -0.7
1,618,720 - -0.9
1,618,720 - -0.6
1,618,720 - +0.6
1,618,720 - -0.6
1,618,720 - -1.4
1,618,720 - +0.2
1,618,720 - +0.2
1,618,720 - +1.4
1,618,723 + -0.2
1,618,723 + +0.1
1,618,723 + +1.0
1,618,723 + -0.7
1,618,723 + -0.8
1,618,724 - -1.8
1,618,724 - -1.9
1,618,856 + -1.7
1,618,856 + -3.1
1,618,883 + +0.7
1,618,883 + -3.1
1,618,946 + OH686_07925 0.13 -1.1
1,618,946 + OH686_07925 0.13 -0.6
1,618,946 + OH686_07925 0.13 -1.4
1,618,946 + OH686_07925 0.13 -0.3
1,618,946 + OH686_07925 0.13 -1.7
1,618,946 + OH686_07925 0.13 -1.1
1,619,127 - OH686_07925 0.23 -1.7
1,619,144 + OH686_07925 0.24 -1.5
1,619,144 + OH686_07925 0.24 -1.2
1,619,144 + OH686_07925 0.24 -3.2
1,619,144 + OH686_07925 0.24 -0.7
1,619,144 + OH686_07925 0.24 -2.8
1,619,144 + OH686_07925 0.24 -3.2
1,619,144 + OH686_07925 0.24 -0.6
1,619,144 + OH686_07925 0.24 -2.8
1,619,144 + OH686_07925 0.24 -2.3
1,619,146 + OH686_07925 0.24 -0.8
1,619,501 + OH686_07925 0.45 -1.5
1,619,501 + OH686_07925 0.45 -0.8
1,619,717 + OH686_07925 0.57 -1.3
1,619,717 + OH686_07925 0.57 -3.4
1,619,717 + OH686_07925 0.57 -3.5
1,619,717 + OH686_07925 0.57 -1.8
1,619,717 + OH686_07925 0.57 -2.9
1,619,717 + OH686_07925 0.57 -0.9
1,619,717 + OH686_07925 0.57 -1.3
1,619,717 + OH686_07925 0.57 -2.7
1,619,766 + OH686_07925 0.60 -0.8
1,619,766 + OH686_07925 0.60 -3.3
1,619,885 + OH686_07925 0.67 -1.9
1,619,885 + OH686_07925 0.67 -2.7
1,619,885 + OH686_07925 0.67 -3.2
1,619,900 + OH686_07925 0.68 -3.3
1,620,005 + OH686_07925 0.74 -2.5
1,620,005 + OH686_07925 0.74 -0.8
1,620,005 + OH686_07925 0.74 -0.6
1,620,005 + OH686_07925 0.74 -2.6
1,620,005 + OH686_07925 0.74 -1.8
1,620,005 + OH686_07925 0.74 -2.1
1,620,005 + OH686_07925 0.74 -2.3
1,620,005 + OH686_07925 0.74 -2.3
1,620,005 + OH686_07925 0.74 -1.9
1,620,119 + OH686_07925 0.81 -2.6
1,620,119 + OH686_07925 0.81 -1.7
1,620,214 + OH686_07925 0.86 -1.7
1,620,233 + OH686_07925 0.87 -2.6
1,620,233 + OH686_07925 0.87 -0.1
1,620,233 + OH686_07925 0.87 -0.5
1,620,233 + OH686_07925 0.87 -2.4
1,620,233 + OH686_07925 0.87 -1.3
1,620,233 + OH686_07925 0.87 -0.6
1,620,234 - OH686_07925 0.87 -2.3
1,620,234 - OH686_07925 0.87 +0.1
1,620,234 - OH686_07925 0.87 -1.7
1,621,067 + -0.2
1,621,067 + -0.2
1,621,068 - -0.4
1,621,068 - +0.3
1,621,144 + +1.0
1,621,144 + +0.4
1,621,144 + -1.0

Or see this region's nucleotide sequence