Strain Fitness in Pseudomonas sp. S08-1 around OH686_07585

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_07580 and OH686_07585 are separated by 122 nucleotidesOH686_07585 and OH686_07590 are separated by 25 nucleotidesOH686_07590 and OH686_07595 are separated by 17 nucleotides OH686_07580: OH686_07580 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase , at 1,547,317 to 1,549,116 _07580 OH686_07585: OH686_07585 - 3-dehydroquinate dehydratase, type II, at 1,549,239 to 1,549,682 _07585 OH686_07590: OH686_07590 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 1,549,708 to 1,550,169 _07590 OH686_07595: OH686_07595 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 1,550,187 to 1,551,539 _07595 Position (kb) 1549 1550Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1549.125 kb on + strandat 1549.160 kb on - strandat 1549.197 kb on + strandat 1549.306 kb on - strand, within OH686_07585at 1549.313 kb on + strand, within OH686_07585at 1549.313 kb on + strand, within OH686_07585at 1549.316 kb on + strand, within OH686_07585at 1549.316 kb on + strand, within OH686_07585at 1549.316 kb on + strand, within OH686_07585at 1549.316 kb on + strand, within OH686_07585at 1549.317 kb on - strand, within OH686_07585at 1549.380 kb on + strand, within OH686_07585at 1549.380 kb on + strand, within OH686_07585at 1549.380 kb on + strand, within OH686_07585at 1549.380 kb on + strand, within OH686_07585at 1549.381 kb on - strand, within OH686_07585at 1549.381 kb on - strand, within OH686_07585at 1549.420 kb on + strand, within OH686_07585at 1549.420 kb on + strand, within OH686_07585at 1549.420 kb on + strand, within OH686_07585at 1549.421 kb on - strand, within OH686_07585at 1549.421 kb on - strand, within OH686_07585at 1549.421 kb on - strand, within OH686_07585at 1549.421 kb on - strand, within OH686_07585at 1549.495 kb on + strand, within OH686_07585at 1549.495 kb on + strand, within OH686_07585at 1549.495 kb on + strand, within OH686_07585at 1549.495 kb on + strand, within OH686_07585at 1549.496 kb on - strand, within OH686_07585at 1549.584 kb on + strand, within OH686_07585at 1549.584 kb on + strand, within OH686_07585at 1549.597 kb on + strand, within OH686_07585at 1549.669 kb on + strandat 1549.669 kb on + strandat 1549.669 kb on + strandat 1549.669 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,549,125 + -0.3
1,549,160 - -0.2
1,549,197 + -0.5
1,549,306 - OH686_07585 0.15 -1.3
1,549,313 + OH686_07585 0.17 -2.0
1,549,313 + OH686_07585 0.17 -0.3
1,549,316 + OH686_07585 0.17 -1.9
1,549,316 + OH686_07585 0.17 -0.9
1,549,316 + OH686_07585 0.17 -3.0
1,549,316 + OH686_07585 0.17 -4.1
1,549,317 - OH686_07585 0.18 -2.6
1,549,380 + OH686_07585 0.32 -1.3
1,549,380 + OH686_07585 0.32 -2.0
1,549,380 + OH686_07585 0.32 -2.2
1,549,380 + OH686_07585 0.32 -2.0
1,549,381 - OH686_07585 0.32 -3.3
1,549,381 - OH686_07585 0.32 -1.9
1,549,420 + OH686_07585 0.41 -0.3
1,549,420 + OH686_07585 0.41 -3.1
1,549,420 + OH686_07585 0.41 -2.2
1,549,421 - OH686_07585 0.41 -0.3
1,549,421 - OH686_07585 0.41 -1.5
1,549,421 - OH686_07585 0.41 -0.3
1,549,421 - OH686_07585 0.41 -2.7
1,549,495 + OH686_07585 0.58 -2.2
1,549,495 + OH686_07585 0.58 -2.5
1,549,495 + OH686_07585 0.58 -0.1
1,549,495 + OH686_07585 0.58 -1.1
1,549,496 - OH686_07585 0.58 -2.0
1,549,584 + OH686_07585 0.78 -0.6
1,549,584 + OH686_07585 0.78 -1.1
1,549,597 + OH686_07585 0.81 -1.9
1,549,669 + -0.3
1,549,669 + -0.7
1,549,669 + +0.3
1,549,669 + +0.6

Or see this region's nucleotide sequence