Strain Fitness in Pseudomonas sp. S08-1 around OH686_06955

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_06950 and OH686_06955 are separated by 127 nucleotidesOH686_06955 and OH686_06960 are separated by 149 nucleotidesOH686_06960 and OH686_06965 are separated by 72 nucleotides OH686_06950: OH686_06950 - hypothetical protein, at 1,419,313 to 1,420,650 _06950 OH686_06955: OH686_06955 - single-stranded-DNA-specific exonuclease RecJ, at 1,420,778 to 1,422,493 _06955 OH686_06960: OH686_06960 - YaeQ protein, at 1,422,643 to 1,423,182 _06960 OH686_06965: OH686_06965 - Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n -related protein, at 1,423,255 to 1,423,944 _06965 Position (kb) 1420 1421 1422 1423Strain fitness (log2 ratio) -2 -1 0 1at 1420.088 kb on + strand, within OH686_06950at 1420.088 kb on + strand, within OH686_06950at 1420.089 kb on - strand, within OH686_06950at 1420.089 kb on - strand, within OH686_06950at 1420.089 kb on - strand, within OH686_06950at 1420.089 kb on - strand, within OH686_06950at 1420.112 kb on + strand, within OH686_06950at 1420.112 kb on + strand, within OH686_06950at 1420.112 kb on + strand, within OH686_06950at 1420.148 kb on + strand, within OH686_06950at 1420.148 kb on + strand, within OH686_06950at 1420.149 kb on - strand, within OH686_06950at 1420.149 kb on - strand, within OH686_06950at 1420.149 kb on - strand, within OH686_06950at 1420.267 kb on + strand, within OH686_06950at 1420.268 kb on - strand, within OH686_06950at 1420.403 kb on + strand, within OH686_06950at 1420.404 kb on - strand, within OH686_06950at 1420.404 kb on - strand, within OH686_06950at 1420.424 kb on + strand, within OH686_06950at 1420.425 kb on - strand, within OH686_06950at 1420.425 kb on - strand, within OH686_06950at 1420.727 kb on + strandat 1420.728 kb on - strandat 1420.734 kb on + strandat 1420.734 kb on + strandat 1420.830 kb on + strandat 1420.830 kb on + strandat 1420.830 kb on + strandat 1420.830 kb on + strandat 1420.831 kb on - strandat 1420.851 kb on + strandat 1421.187 kb on + strand, within OH686_06955at 1421.187 kb on + strand, within OH686_06955at 1421.187 kb on + strand, within OH686_06955at 1421.187 kb on + strand, within OH686_06955at 1421.187 kb on + strand, within OH686_06955at 1421.187 kb on + strand, within OH686_06955at 1421.187 kb on + strand, within OH686_06955at 1421.188 kb on - strand, within OH686_06955at 1421.188 kb on - strand, within OH686_06955at 1421.188 kb on - strand, within OH686_06955at 1421.188 kb on - strand, within OH686_06955at 1421.530 kb on + strand, within OH686_06955at 1421.530 kb on + strand, within OH686_06955at 1421.531 kb on - strand, within OH686_06955at 1421.531 kb on - strand, within OH686_06955at 1421.600 kb on + strand, within OH686_06955at 1421.600 kb on + strand, within OH686_06955at 1421.601 kb on - strand, within OH686_06955at 1421.601 kb on - strand, within OH686_06955at 1421.869 kb on + strand, within OH686_06955at 1421.869 kb on + strand, within OH686_06955at 1421.869 kb on + strand, within OH686_06955at 1421.870 kb on - strand, within OH686_06955at 1421.870 kb on - strand, within OH686_06955at 1421.909 kb on + strand, within OH686_06955at 1421.910 kb on - strand, within OH686_06955at 1421.910 kb on - strand, within OH686_06955at 1421.910 kb on - strand, within OH686_06955at 1421.910 kb on - strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.912 kb on + strand, within OH686_06955at 1421.913 kb on - strand, within OH686_06955at 1421.913 kb on - strand, within OH686_06955at 1421.913 kb on - strand, within OH686_06955at 1421.913 kb on - strand, within OH686_06955at 1421.913 kb on - strand, within OH686_06955at 1421.913 kb on - strand, within OH686_06955at 1421.913 kb on - strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.916 kb on + strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1421.917 kb on - strand, within OH686_06955at 1422.039 kb on - strand, within OH686_06955at 1422.039 kb on - strand, within OH686_06955at 1422.039 kb on - strand, within OH686_06955at 1422.168 kb on + strand, within OH686_06955at 1422.168 kb on + strand, within OH686_06955at 1422.169 kb on - strand, within OH686_06955at 1422.192 kb on + strand, within OH686_06955at 1422.193 kb on - strand, within OH686_06955at 1422.193 kb on - strand, within OH686_06955at 1422.354 kb on + strandat 1422.355 kb on - strandat 1422.417 kb on + strandat 1422.417 kb on + strandat 1422.417 kb on + strandat 1422.417 kb on + strandat 1422.418 kb on - strandat 1422.418 kb on - strandat 1422.704 kb on + strand, within OH686_06960at 1422.704 kb on + strand, within OH686_06960at 1422.704 kb on + strand, within OH686_06960at 1422.705 kb on - strand, within OH686_06960at 1422.705 kb on - strand, within OH686_06960at 1422.705 kb on - strand, within OH686_06960at 1422.705 kb on - strand, within OH686_06960at 1422.863 kb on + strand, within OH686_06960at 1423.031 kb on + strand, within OH686_06960at 1423.119 kb on - strand, within OH686_06960at 1423.160 kb on + strandat 1423.161 kb on - strandat 1423.161 kb on - strandat 1423.161 kb on - strandat 1423.299 kb on - strandat 1423.299 kb on - strandat 1423.331 kb on - strand, within OH686_06965at 1423.353 kb on + strand, within OH686_06965at 1423.354 kb on - strand, within OH686_06965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,420,088 + OH686_06950 0.58 +0.0
1,420,088 + OH686_06950 0.58 -0.0
1,420,089 - OH686_06950 0.58 +0.3
1,420,089 - OH686_06950 0.58 +0.7
1,420,089 - OH686_06950 0.58 -1.2
1,420,089 - OH686_06950 0.58 +0.2
1,420,112 + OH686_06950 0.60 -1.4
1,420,112 + OH686_06950 0.60 -0.5
1,420,112 + OH686_06950 0.60 -0.2
1,420,148 + OH686_06950 0.62 -0.5
1,420,148 + OH686_06950 0.62 +0.1
1,420,149 - OH686_06950 0.62 +1.1
1,420,149 - OH686_06950 0.62 -1.2
1,420,149 - OH686_06950 0.62 -0.2
1,420,267 + OH686_06950 0.71 -0.1
1,420,268 - OH686_06950 0.71 -0.3
1,420,403 + OH686_06950 0.81 -0.5
1,420,404 - OH686_06950 0.82 -0.1
1,420,404 - OH686_06950 0.82 +0.9
1,420,424 + OH686_06950 0.83 -0.2
1,420,425 - OH686_06950 0.83 +0.4
1,420,425 - OH686_06950 0.83 +0.2
1,420,727 + +1.2
1,420,728 - +0.6
1,420,734 + -0.5
1,420,734 + +0.1
1,420,830 + -0.1
1,420,830 + -0.3
1,420,830 + +0.0
1,420,830 + -0.8
1,420,831 - +0.1
1,420,851 + +1.3
1,421,187 + OH686_06955 0.24 +0.5
1,421,187 + OH686_06955 0.24 -1.0
1,421,187 + OH686_06955 0.24 -1.3
1,421,187 + OH686_06955 0.24 -1.4
1,421,187 + OH686_06955 0.24 -0.3
1,421,187 + OH686_06955 0.24 +0.2
1,421,187 + OH686_06955 0.24 -0.5
1,421,188 - OH686_06955 0.24 -0.1
1,421,188 - OH686_06955 0.24 +0.3
1,421,188 - OH686_06955 0.24 +1.1
1,421,188 - OH686_06955 0.24 -2.5
1,421,530 + OH686_06955 0.44 -1.3
1,421,530 + OH686_06955 0.44 +0.1
1,421,531 - OH686_06955 0.44 +0.5
1,421,531 - OH686_06955 0.44 +0.5
1,421,600 + OH686_06955 0.48 -1.1
1,421,600 + OH686_06955 0.48 -0.1
1,421,601 - OH686_06955 0.48 -0.5
1,421,601 - OH686_06955 0.48 +0.0
1,421,869 + OH686_06955 0.64 +1.0
1,421,869 + OH686_06955 0.64 -0.5
1,421,869 + OH686_06955 0.64 +0.6
1,421,870 - OH686_06955 0.64 -0.6
1,421,870 - OH686_06955 0.64 +0.4
1,421,909 + OH686_06955 0.66 -0.2
1,421,910 - OH686_06955 0.66 -0.9
1,421,910 - OH686_06955 0.66 +0.1
1,421,910 - OH686_06955 0.66 +0.5
1,421,910 - OH686_06955 0.66 -0.6
1,421,912 + OH686_06955 0.66 -0.1
1,421,912 + OH686_06955 0.66 -0.0
1,421,912 + OH686_06955 0.66 -0.4
1,421,912 + OH686_06955 0.66 +0.1
1,421,912 + OH686_06955 0.66 +0.2
1,421,912 + OH686_06955 0.66 +0.3
1,421,912 + OH686_06955 0.66 -0.3
1,421,912 + OH686_06955 0.66 +0.6
1,421,913 - OH686_06955 0.66 -0.2
1,421,913 - OH686_06955 0.66 -0.1
1,421,913 - OH686_06955 0.66 +0.6
1,421,913 - OH686_06955 0.66 -0.6
1,421,913 - OH686_06955 0.66 +0.6
1,421,913 - OH686_06955 0.66 +0.4
1,421,913 - OH686_06955 0.66 -0.6
1,421,916 + OH686_06955 0.66 -0.6
1,421,916 + OH686_06955 0.66 -1.0
1,421,916 + OH686_06955 0.66 +0.4
1,421,916 + OH686_06955 0.66 +0.7
1,421,916 + OH686_06955 0.66 -1.2
1,421,916 + OH686_06955 0.66 +0.1
1,421,916 + OH686_06955 0.66 +0.6
1,421,916 + OH686_06955 0.66 +0.1
1,421,916 + OH686_06955 0.66 +0.2
1,421,916 + OH686_06955 0.66 +0.9
1,421,917 - OH686_06955 0.66 -0.9
1,421,917 - OH686_06955 0.66 -1.1
1,421,917 - OH686_06955 0.66 -1.1
1,421,917 - OH686_06955 0.66 -0.3
1,421,917 - OH686_06955 0.66 -0.2
1,421,917 - OH686_06955 0.66 +0.3
1,421,917 - OH686_06955 0.66 -0.3
1,421,917 - OH686_06955 0.66 -0.6
1,421,917 - OH686_06955 0.66 -0.0
1,421,917 - OH686_06955 0.66 -0.2
1,422,039 - OH686_06955 0.73 +0.5
1,422,039 - OH686_06955 0.73 +1.1
1,422,039 - OH686_06955 0.73 -1.3
1,422,168 + OH686_06955 0.81 +0.2
1,422,168 + OH686_06955 0.81 -0.3
1,422,169 - OH686_06955 0.81 -0.9
1,422,192 + OH686_06955 0.82 -0.4
1,422,193 - OH686_06955 0.82 -0.1
1,422,193 - OH686_06955 0.82 -1.6
1,422,354 + +0.2
1,422,355 - +0.2
1,422,417 + +0.0
1,422,417 + -0.5
1,422,417 + -0.7
1,422,417 + +0.9
1,422,418 - +0.4
1,422,418 - +0.9
1,422,704 + OH686_06960 0.11 -0.1
1,422,704 + OH686_06960 0.11 -0.3
1,422,704 + OH686_06960 0.11 +0.6
1,422,705 - OH686_06960 0.11 +0.4
1,422,705 - OH686_06960 0.11 +0.7
1,422,705 - OH686_06960 0.11 -0.5
1,422,705 - OH686_06960 0.11 -1.8
1,422,863 + OH686_06960 0.41 -0.4
1,423,031 + OH686_06960 0.72 +0.5
1,423,119 - OH686_06960 0.88 -0.1
1,423,160 + -0.6
1,423,161 - +0.5
1,423,161 - -0.6
1,423,161 - -0.1
1,423,299 - -0.8
1,423,299 - -0.3
1,423,331 - OH686_06965 0.11 -0.6
1,423,353 + OH686_06965 0.14 +0.9
1,423,354 - OH686_06965 0.14 -0.6

Or see this region's nucleotide sequence