Strain Fitness in Pseudomonas sp. S08-1 around OH686_05910

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_05900 and OH686_05905 are separated by 130 nucleotidesOH686_05905 and OH686_05910 overlap by 4 nucleotidesOH686_05910 and OH686_05915 are separated by 2 nucleotidesOH686_05915 and OH686_05920 are separated by 10 nucleotides OH686_05900: OH686_05900 - Urea carboxylase-related ABC transporter, substrate-binding protein, at 1,189,563 to 1,190,630 _05900 OH686_05905: OH686_05905 - Urea carboxylase-related ABC transporter, permease protein, at 1,190,761 to 1,191,576 _05905 OH686_05910: OH686_05910 - Urea carboxylase-related ABC transporter, ATP-binding protein, at 1,191,573 to 1,192,355 _05910 OH686_05915: OH686_05915 - Urea carboxylase-related aminomethyltransferase, at 1,192,358 to 1,193,086 _05915 OH686_05920: OH686_05920 - Urea carboxylase-related aminomethyltransferase, at 1,193,097 to 1,193,732 _05920 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -3 -2 -1 0 1at 1190.628 kb on + strandat 1190.628 kb on + strandat 1190.628 kb on + strandat 1190.628 kb on + strandat 1190.628 kb on + strandat 1190.629 kb on - strandat 1190.629 kb on - strandat 1190.629 kb on - strandat 1190.629 kb on - strandat 1190.629 kb on - strandat 1190.629 kb on - strandat 1190.629 kb on - strandat 1190.629 kb on - strandat 1190.643 kb on - strandat 1190.842 kb on + strandat 1190.843 kb on - strand, within OH686_05905at 1190.965 kb on + strand, within OH686_05905at 1190.965 kb on + strand, within OH686_05905at 1190.965 kb on + strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1190.966 kb on - strand, within OH686_05905at 1191.451 kb on + strand, within OH686_05905at 1191.451 kb on + strand, within OH686_05905at 1191.451 kb on + strand, within OH686_05905at 1191.451 kb on + strand, within OH686_05905at 1191.452 kb on - strand, within OH686_05905at 1191.452 kb on - strand, within OH686_05905at 1191.452 kb on - strand, within OH686_05905at 1191.452 kb on - strand, within OH686_05905at 1191.452 kb on - strand, within OH686_05905at 1191.452 kb on - strand, within OH686_05905at 1191.453 kb on + strand, within OH686_05905at 1191.453 kb on + strand, within OH686_05905at 1191.453 kb on + strand, within OH686_05905at 1191.453 kb on + strand, within OH686_05905at 1191.453 kb on + strand, within OH686_05905at 1191.454 kb on - strand, within OH686_05905at 1191.454 kb on - strand, within OH686_05905at 1191.454 kb on - strand, within OH686_05905at 1191.454 kb on - strand, within OH686_05905at 1191.454 kb on - strand, within OH686_05905at 1191.478 kb on + strand, within OH686_05905at 1191.478 kb on + strand, within OH686_05905at 1191.479 kb on - strand, within OH686_05905at 1191.479 kb on - strand, within OH686_05905at 1191.479 kb on - strand, within OH686_05905at 1191.556 kb on + strandat 1191.556 kb on + strandat 1191.609 kb on + strandat 1191.610 kb on - strandat 1191.982 kb on - strand, within OH686_05910at 1192.269 kb on + strand, within OH686_05910at 1192.269 kb on + strand, within OH686_05910at 1192.269 kb on + strand, within OH686_05910at 1192.269 kb on + strand, within OH686_05910at 1192.269 kb on + strand, within OH686_05910at 1192.270 kb on - strand, within OH686_05910at 1192.270 kb on - strand, within OH686_05910at 1192.270 kb on - strand, within OH686_05910at 1192.270 kb on - strand, within OH686_05910at 1192.270 kb on - strand, within OH686_05910at 1192.494 kb on + strand, within OH686_05915at 1192.495 kb on - strand, within OH686_05915at 1192.589 kb on + strand, within OH686_05915at 1192.691 kb on + strand, within OH686_05915at 1192.691 kb on + strand, within OH686_05915at 1192.691 kb on + strand, within OH686_05915at 1192.691 kb on + strand, within OH686_05915at 1192.691 kb on + strand, within OH686_05915at 1192.691 kb on + strand, within OH686_05915at 1192.692 kb on - strand, within OH686_05915at 1192.727 kb on + strand, within OH686_05915at 1192.727 kb on + strand, within OH686_05915at 1192.883 kb on + strand, within OH686_05915at 1192.883 kb on + strand, within OH686_05915at 1192.884 kb on - strand, within OH686_05915at 1192.895 kb on + strand, within OH686_05915at 1192.895 kb on + strand, within OH686_05915at 1192.910 kb on - strand, within OH686_05915at 1192.920 kb on + strand, within OH686_05915at 1192.921 kb on - strand, within OH686_05915at 1192.962 kb on - strand, within OH686_05915at 1192.962 kb on - strand, within OH686_05915at 1192.962 kb on - strand, within OH686_05915at 1192.962 kb on - strand, within OH686_05915at 1193.078 kb on + strandat 1193.078 kb on + strandat 1193.078 kb on + strandat 1193.078 kb on + strandat 1193.078 kb on + strandat 1193.078 kb on + strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.079 kb on - strandat 1193.313 kb on + strand, within OH686_05920at 1193.313 kb on + strand, within OH686_05920at 1193.313 kb on + strand, within OH686_05920at 1193.313 kb on + strand, within OH686_05920at 1193.313 kb on + strand, within OH686_05920at 1193.314 kb on - strand, within OH686_05920at 1193.314 kb on - strand, within OH686_05920at 1193.314 kb on - strand, within OH686_05920at 1193.337 kb on + strand, within OH686_05920at 1193.337 kb on + strand, within OH686_05920at 1193.337 kb on + strand, within OH686_05920at 1193.338 kb on - strand, within OH686_05920at 1193.338 kb on - strand, within OH686_05920

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,190,628 + -0.4
1,190,628 + +0.7
1,190,628 + -0.6
1,190,628 + +0.1
1,190,628 + -0.8
1,190,629 - +0.7
1,190,629 - +0.1
1,190,629 - -0.3
1,190,629 - +0.1
1,190,629 - +0.0
1,190,629 - -0.3
1,190,629 - -0.6
1,190,629 - +0.5
1,190,643 - +1.0
1,190,842 + +0.3
1,190,843 - OH686_05905 0.10 +1.1
1,190,965 + OH686_05905 0.25 -0.3
1,190,965 + OH686_05905 0.25 +0.6
1,190,965 + OH686_05905 0.25 -1.1
1,190,966 - OH686_05905 0.25 +0.4
1,190,966 - OH686_05905 0.25 -1.3
1,190,966 - OH686_05905 0.25 -0.3
1,190,966 - OH686_05905 0.25 -0.2
1,190,966 - OH686_05905 0.25 +0.4
1,190,966 - OH686_05905 0.25 +0.1
1,190,966 - OH686_05905 0.25 +0.5
1,190,966 - OH686_05905 0.25 +0.0
1,190,966 - OH686_05905 0.25 -0.1
1,190,966 - OH686_05905 0.25 +0.8
1,191,451 + OH686_05905 0.85 -1.0
1,191,451 + OH686_05905 0.85 -1.2
1,191,451 + OH686_05905 0.85 +0.8
1,191,451 + OH686_05905 0.85 +0.4
1,191,452 - OH686_05905 0.85 -0.3
1,191,452 - OH686_05905 0.85 +0.4
1,191,452 - OH686_05905 0.85 -0.6
1,191,452 - OH686_05905 0.85 +0.0
1,191,452 - OH686_05905 0.85 +0.5
1,191,452 - OH686_05905 0.85 +0.3
1,191,453 + OH686_05905 0.85 +0.1
1,191,453 + OH686_05905 0.85 -0.9
1,191,453 + OH686_05905 0.85 -0.8
1,191,453 + OH686_05905 0.85 -0.3
1,191,453 + OH686_05905 0.85 -0.1
1,191,454 - OH686_05905 0.85 +1.2
1,191,454 - OH686_05905 0.85 -0.0
1,191,454 - OH686_05905 0.85 -0.3
1,191,454 - OH686_05905 0.85 +0.3
1,191,454 - OH686_05905 0.85 +0.3
1,191,478 + OH686_05905 0.88 -1.5
1,191,478 + OH686_05905 0.88 -1.0
1,191,479 - OH686_05905 0.88 -0.3
1,191,479 - OH686_05905 0.88 +1.2
1,191,479 - OH686_05905 0.88 +1.1
1,191,556 + -0.2
1,191,556 + -0.6
1,191,609 + +0.6
1,191,610 - -0.1
1,191,982 - OH686_05910 0.52 -0.1
1,192,269 + OH686_05910 0.89 +1.1
1,192,269 + OH686_05910 0.89 +0.3
1,192,269 + OH686_05910 0.89 +0.9
1,192,269 + OH686_05910 0.89 +0.9
1,192,269 + OH686_05910 0.89 +0.5
1,192,270 - OH686_05910 0.89 +0.4
1,192,270 - OH686_05910 0.89 +0.6
1,192,270 - OH686_05910 0.89 +0.0
1,192,270 - OH686_05910 0.89 +1.2
1,192,270 - OH686_05910 0.89 +0.3
1,192,494 + OH686_05915 0.19 -0.0
1,192,495 - OH686_05915 0.19 -0.2
1,192,589 + OH686_05915 0.32 +0.6
1,192,691 + OH686_05915 0.46 -0.3
1,192,691 + OH686_05915 0.46 -0.2
1,192,691 + OH686_05915 0.46 -0.6
1,192,691 + OH686_05915 0.46 -1.7
1,192,691 + OH686_05915 0.46 +0.1
1,192,691 + OH686_05915 0.46 +0.1
1,192,692 - OH686_05915 0.46 -0.4
1,192,727 + OH686_05915 0.51 -0.7
1,192,727 + OH686_05915 0.51 -0.2
1,192,883 + OH686_05915 0.72 -0.6
1,192,883 + OH686_05915 0.72 +0.1
1,192,884 - OH686_05915 0.72 -0.3
1,192,895 + OH686_05915 0.74 +0.2
1,192,895 + OH686_05915 0.74 -0.7
1,192,910 - OH686_05915 0.76 -0.6
1,192,920 + OH686_05915 0.77 -0.1
1,192,921 - OH686_05915 0.77 +0.1
1,192,962 - OH686_05915 0.83 -0.4
1,192,962 - OH686_05915 0.83 +0.4
1,192,962 - OH686_05915 0.83 -0.6
1,192,962 - OH686_05915 0.83 -0.5
1,193,078 + -0.4
1,193,078 + -0.0
1,193,078 + +0.5
1,193,078 + -0.2
1,193,078 + -0.3
1,193,078 + +0.1
1,193,079 - +0.7
1,193,079 - +1.5
1,193,079 - +0.3
1,193,079 - -0.0
1,193,079 - +0.1
1,193,079 - +0.2
1,193,079 - -2.9
1,193,079 - +0.3
1,193,079 - -1.0
1,193,079 - +1.0
1,193,313 + OH686_05920 0.34 -0.5
1,193,313 + OH686_05920 0.34 -0.3
1,193,313 + OH686_05920 0.34 -0.6
1,193,313 + OH686_05920 0.34 +1.1
1,193,313 + OH686_05920 0.34 -0.2
1,193,314 - OH686_05920 0.34 -0.3
1,193,314 - OH686_05920 0.34 -0.5
1,193,314 - OH686_05920 0.34 +0.0
1,193,337 + OH686_05920 0.38 -0.2
1,193,337 + OH686_05920 0.38 +0.9
1,193,337 + OH686_05920 0.38 -0.3
1,193,338 - OH686_05920 0.38 -0.1
1,193,338 - OH686_05920 0.38 -0.9

Or see this region's nucleotide sequence