Strain Fitness in Pseudomonas sp. S08-1 around OH686_05370

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_05360 and OH686_05365 are separated by 213 nucleotidesOH686_05365 and OH686_05370 are separated by 65 nucleotidesOH686_05370 and OH686_05375 overlap by 4 nucleotidesOH686_05375 and OH686_05380 are separated by 10 nucleotides OH686_05360: OH686_05360 - hypothetical protein, at 1,091,168 to 1,092,820 _05360 OH686_05365: OH686_05365 - hypothetical protein, at 1,093,034 to 1,093,603 _05365 OH686_05370: OH686_05370 - tRNA (cmo5U34)-methyltransferase, at 1,093,669 to 1,094,412 _05370 OH686_05375: OH686_05375 - tRNA (mo5U34)-methyltransferase, at 1,094,409 to 1,095,380 _05375 OH686_05380: OH686_05380 - hypothetical protein, at 1,095,391 to 1,095,828 _05380 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -2 -1 0 1 2at 1092.716 kb on + strandat 1092.716 kb on + strandat 1092.716 kb on + strandat 1092.716 kb on + strandat 1092.717 kb on - strandat 1092.717 kb on - strandat 1092.753 kb on + strandat 1092.753 kb on + strandat 1092.833 kb on + strandat 1092.890 kb on + strandat 1092.890 kb on + strandat 1092.890 kb on + strandat 1092.890 kb on + strandat 1092.890 kb on + strandat 1092.891 kb on - strandat 1092.891 kb on - strandat 1092.891 kb on - strandat 1092.891 kb on - strandat 1092.902 kb on - strandat 1092.999 kb on - strandat 1092.999 kb on - strandat 1093.000 kb on + strandat 1093.000 kb on + strandat 1093.000 kb on + strandat 1093.001 kb on - strandat 1093.001 kb on - strandat 1093.142 kb on + strand, within OH686_05365at 1093.142 kb on + strand, within OH686_05365at 1093.142 kb on + strand, within OH686_05365at 1093.143 kb on - strand, within OH686_05365at 1093.143 kb on - strand, within OH686_05365at 1093.143 kb on - strand, within OH686_05365at 1093.143 kb on - strand, within OH686_05365at 1093.143 kb on - strand, within OH686_05365at 1093.164 kb on - strand, within OH686_05365at 1093.304 kb on + strand, within OH686_05365at 1093.358 kb on + strand, within OH686_05365at 1093.358 kb on + strand, within OH686_05365at 1093.416 kb on + strand, within OH686_05365at 1093.416 kb on + strand, within OH686_05365at 1093.416 kb on + strand, within OH686_05365at 1093.417 kb on - strand, within OH686_05365at 1093.417 kb on - strand, within OH686_05365at 1093.417 kb on - strand, within OH686_05365at 1093.417 kb on - strand, within OH686_05365at 1093.417 kb on - strand, within OH686_05365at 1093.417 kb on - strand, within OH686_05365at 1093.417 kb on - strand, within OH686_05365at 1093.467 kb on + strand, within OH686_05365at 1093.468 kb on - strand, within OH686_05365at 1093.494 kb on + strand, within OH686_05365at 1093.495 kb on - strand, within OH686_05365at 1093.633 kb on + strandat 1093.633 kb on + strandat 1093.634 kb on - strandat 1093.852 kb on + strand, within OH686_05370at 1093.853 kb on - strand, within OH686_05370at 1093.853 kb on - strand, within OH686_05370at 1093.853 kb on - strand, within OH686_05370at 1093.853 kb on - strand, within OH686_05370at 1093.972 kb on + strand, within OH686_05370at 1093.972 kb on + strand, within OH686_05370at 1093.972 kb on + strand, within OH686_05370at 1093.972 kb on + strand, within OH686_05370at 1094.251 kb on + strand, within OH686_05370at 1094.252 kb on - strand, within OH686_05370at 1094.593 kb on + strand, within OH686_05375at 1094.593 kb on + strand, within OH686_05375at 1094.593 kb on + strand, within OH686_05375at 1094.594 kb on - strand, within OH686_05375at 1094.594 kb on - strand, within OH686_05375at 1094.594 kb on - strand, within OH686_05375at 1094.594 kb on - strand, within OH686_05375at 1094.594 kb on - strand, within OH686_05375at 1094.711 kb on + strand, within OH686_05375at 1094.811 kb on + strand, within OH686_05375at 1094.811 kb on + strand, within OH686_05375at 1094.812 kb on - strand, within OH686_05375at 1094.812 kb on - strand, within OH686_05375at 1094.812 kb on - strand, within OH686_05375at 1094.812 kb on - strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.814 kb on + strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.815 kb on - strand, within OH686_05375at 1094.907 kb on + strand, within OH686_05375at 1094.907 kb on + strand, within OH686_05375at 1094.907 kb on + strand, within OH686_05375at 1094.907 kb on + strand, within OH686_05375at 1094.908 kb on - strand, within OH686_05375at 1094.908 kb on - strand, within OH686_05375at 1094.908 kb on - strand, within OH686_05375at 1095.006 kb on + strand, within OH686_05375at 1095.006 kb on + strand, within OH686_05375at 1095.007 kb on - strand, within OH686_05375at 1095.264 kb on - strand, within OH686_05375

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,092,716 + -0.0
1,092,716 + -0.1
1,092,716 + -0.8
1,092,716 + -0.1
1,092,717 - +0.1
1,092,717 - -0.2
1,092,753 + +0.1
1,092,753 + +0.5
1,092,833 + -0.7
1,092,890 + +0.4
1,092,890 + -0.1
1,092,890 + +0.7
1,092,890 + -0.1
1,092,890 + -0.2
1,092,891 - +0.0
1,092,891 - -0.9
1,092,891 - +0.8
1,092,891 - +0.1
1,092,902 - +0.4
1,092,999 - -0.0
1,092,999 - -0.4
1,093,000 + -0.8
1,093,000 + +0.1
1,093,000 + -0.5
1,093,001 - -1.9
1,093,001 - -1.6
1,093,142 + OH686_05365 0.19 +0.2
1,093,142 + OH686_05365 0.19 +0.6
1,093,142 + OH686_05365 0.19 -1.1
1,093,143 - OH686_05365 0.19 -0.9
1,093,143 - OH686_05365 0.19 -0.3
1,093,143 - OH686_05365 0.19 +0.3
1,093,143 - OH686_05365 0.19 +0.0
1,093,143 - OH686_05365 0.19 -1.6
1,093,164 - OH686_05365 0.23 +0.3
1,093,304 + OH686_05365 0.47 +0.1
1,093,358 + OH686_05365 0.57 -0.6
1,093,358 + OH686_05365 0.57 -0.3
1,093,416 + OH686_05365 0.67 +0.2
1,093,416 + OH686_05365 0.67 +0.1
1,093,416 + OH686_05365 0.67 +0.3
1,093,417 - OH686_05365 0.67 -2.2
1,093,417 - OH686_05365 0.67 +0.2
1,093,417 - OH686_05365 0.67 -0.3
1,093,417 - OH686_05365 0.67 +0.3
1,093,417 - OH686_05365 0.67 +0.5
1,093,417 - OH686_05365 0.67 +0.2
1,093,417 - OH686_05365 0.67 +0.4
1,093,467 + OH686_05365 0.76 -0.0
1,093,468 - OH686_05365 0.76 +0.1
1,093,494 + OH686_05365 0.81 +1.1
1,093,495 - OH686_05365 0.81 -0.3
1,093,633 + -0.3
1,093,633 + +0.1
1,093,634 - -0.6
1,093,852 + OH686_05370 0.25 -1.3
1,093,853 - OH686_05370 0.25 -1.1
1,093,853 - OH686_05370 0.25 +0.5
1,093,853 - OH686_05370 0.25 +0.3
1,093,853 - OH686_05370 0.25 +0.1
1,093,972 + OH686_05370 0.41 +0.2
1,093,972 + OH686_05370 0.41 +0.4
1,093,972 + OH686_05370 0.41 +0.1
1,093,972 + OH686_05370 0.41 +0.1
1,094,251 + OH686_05370 0.78 +0.8
1,094,252 - OH686_05370 0.78 +0.9
1,094,593 + OH686_05375 0.19 +0.2
1,094,593 + OH686_05375 0.19 +0.2
1,094,593 + OH686_05375 0.19 -1.0
1,094,594 - OH686_05375 0.19 -0.7
1,094,594 - OH686_05375 0.19 +0.6
1,094,594 - OH686_05375 0.19 +1.8
1,094,594 - OH686_05375 0.19 +0.3
1,094,594 - OH686_05375 0.19 +0.0
1,094,711 + OH686_05375 0.31 +1.4
1,094,811 + OH686_05375 0.41 +0.5
1,094,811 + OH686_05375 0.41 -0.1
1,094,812 - OH686_05375 0.41 +0.4
1,094,812 - OH686_05375 0.41 +0.7
1,094,812 - OH686_05375 0.41 -0.0
1,094,812 - OH686_05375 0.41 +1.3
1,094,814 + OH686_05375 0.42 +0.8
1,094,814 + OH686_05375 0.42 +0.0
1,094,814 + OH686_05375 0.42 -0.3
1,094,814 + OH686_05375 0.42 +0.8
1,094,814 + OH686_05375 0.42 +1.4
1,094,814 + OH686_05375 0.42 +0.3
1,094,814 + OH686_05375 0.42 -0.1
1,094,814 + OH686_05375 0.42 +0.2
1,094,814 + OH686_05375 0.42 +0.5
1,094,814 + OH686_05375 0.42 +0.1
1,094,814 + OH686_05375 0.42 -0.2
1,094,814 + OH686_05375 0.42 +0.5
1,094,814 + OH686_05375 0.42 +0.6
1,094,814 + OH686_05375 0.42 -0.1
1,094,814 + OH686_05375 0.42 -0.6
1,094,814 + OH686_05375 0.42 +0.3
1,094,814 + OH686_05375 0.42 -0.9
1,094,814 + OH686_05375 0.42 -0.6
1,094,814 + OH686_05375 0.42 +0.0
1,094,814 + OH686_05375 0.42 -0.4
1,094,814 + OH686_05375 0.42 +0.8
1,094,814 + OH686_05375 0.42 +0.3
1,094,814 + OH686_05375 0.42 -0.0
1,094,814 + OH686_05375 0.42 +0.4
1,094,815 - OH686_05375 0.42 +0.3
1,094,815 - OH686_05375 0.42 +0.2
1,094,815 - OH686_05375 0.42 +0.8
1,094,815 - OH686_05375 0.42 -1.0
1,094,815 - OH686_05375 0.42 -0.5
1,094,815 - OH686_05375 0.42 +1.3
1,094,815 - OH686_05375 0.42 +0.6
1,094,815 - OH686_05375 0.42 +0.6
1,094,815 - OH686_05375 0.42 -0.6
1,094,815 - OH686_05375 0.42 +0.3
1,094,815 - OH686_05375 0.42 -0.1
1,094,815 - OH686_05375 0.42 +0.6
1,094,815 - OH686_05375 0.42 -0.4
1,094,815 - OH686_05375 0.42 +0.1
1,094,815 - OH686_05375 0.42 +0.1
1,094,815 - OH686_05375 0.42 +0.2
1,094,815 - OH686_05375 0.42 -0.3
1,094,815 - OH686_05375 0.42 +0.9
1,094,815 - OH686_05375 0.42 +1.0
1,094,907 + OH686_05375 0.51 +0.4
1,094,907 + OH686_05375 0.51 +0.4
1,094,907 + OH686_05375 0.51 -0.5
1,094,907 + OH686_05375 0.51 -0.0
1,094,908 - OH686_05375 0.51 +0.9
1,094,908 - OH686_05375 0.51 -0.2
1,094,908 - OH686_05375 0.51 +0.5
1,095,006 + OH686_05375 0.61 -0.1
1,095,006 + OH686_05375 0.61 -0.4
1,095,007 - OH686_05375 0.62 -0.7
1,095,264 - OH686_05375 0.88 -1.2

Or see this region's nucleotide sequence