Strain Fitness in Pseudomonas sp. S08-1 around OH686_04790

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04780 and OH686_04785 are separated by 7 nucleotidesOH686_04785 and OH686_04790 are separated by 30 nucleotidesOH686_04790 and OH686_04795 are separated by 23 nucleotides OH686_04780: OH686_04780 - Glycerate kinase , at 984,243 to 985,379 _04780 OH686_04785: OH686_04785 - pyridoxamine 5'-phosphate oxidase, at 985,387 to 986,049 _04785 OH686_04790: OH686_04790 - OmpA family protein, at 986,080 to 986,781 _04790 OH686_04795: OH686_04795 - Putative esterase, at 986,805 to 987,950 _04795 Position (kb) 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 985.188 kb on + strand, within OH686_04780at 985.188 kb on + strand, within OH686_04780at 985.188 kb on + strand, within OH686_04780at 985.189 kb on - strand, within OH686_04780at 985.189 kb on - strand, within OH686_04780at 985.189 kb on - strand, within OH686_04780at 985.189 kb on - strand, within OH686_04780at 985.189 kb on - strand, within OH686_04780at 985.189 kb on - strand, within OH686_04780at 986.081 kb on + strandat 986.081 kb on + strandat 986.082 kb on - strandat 986.082 kb on - strandat 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.159 kb on + strand, within OH686_04790at 986.160 kb on - strand, within OH686_04790at 986.160 kb on - strand, within OH686_04790at 986.160 kb on - strand, within OH686_04790at 986.597 kb on + strand, within OH686_04790at 986.597 kb on + strand, within OH686_04790at 986.597 kb on + strand, within OH686_04790at 986.598 kb on - strand, within OH686_04790at 986.598 kb on - strand, within OH686_04790at 986.598 kb on - strand, within OH686_04790at 986.697 kb on + strand, within OH686_04790at 986.697 kb on + strand, within OH686_04790at 986.697 kb on + strand, within OH686_04790at 986.697 kb on + strand, within OH686_04790at 986.697 kb on + strand, within OH686_04790at 986.697 kb on + strand, within OH686_04790at 986.698 kb on - strand, within OH686_04790at 986.785 kb on + strandat 986.785 kb on + strandat 986.785 kb on + strandat 986.785 kb on + strandat 986.785 kb on + strandat 986.785 kb on + strandat 986.785 kb on + strandat 986.785 kb on + strandat 986.785 kb on + strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.786 kb on - strandat 986.806 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.859 kb on + strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.860 kb on - strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.863 kb on + strandat 986.864 kb on - strandat 986.864 kb on - strandat 986.864 kb on - strandat 986.864 kb on - strandat 986.864 kb on - strandat 986.864 kb on - strandat 986.864 kb on - strandat 986.974 kb on + strand, within OH686_04795at 986.974 kb on + strand, within OH686_04795at 986.975 kb on - strand, within OH686_04795at 986.975 kb on - strand, within OH686_04795at 986.975 kb on - strand, within OH686_04795at 986.975 kb on - strand, within OH686_04795at 986.975 kb on - strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.039 kb on + strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.040 kb on - strand, within OH686_04795at 987.127 kb on + strand, within OH686_04795at 987.127 kb on + strand, within OH686_04795at 987.206 kb on + strand, within OH686_04795at 987.218 kb on + strand, within OH686_04795at 987.218 kb on + strand, within OH686_04795at 987.218 kb on + strand, within OH686_04795at 987.219 kb on - strand, within OH686_04795at 987.219 kb on - strand, within OH686_04795at 987.469 kb on + strand, within OH686_04795at 987.469 kb on + strand, within OH686_04795at 987.469 kb on + strand, within OH686_04795at 987.469 kb on + strand, within OH686_04795at 987.469 kb on + strand, within OH686_04795at 987.470 kb on - strand, within OH686_04795at 987.470 kb on - strand, within OH686_04795at 987.470 kb on - strand, within OH686_04795at 987.470 kb on - strand, within OH686_04795at 987.556 kb on + strand, within OH686_04795at 987.556 kb on + strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795at 987.557 kb on - strand, within OH686_04795

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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985,188 + OH686_04780 0.83 -0.2
985,188 + OH686_04780 0.83 +0.8
985,188 + OH686_04780 0.83 +1.0
985,189 - OH686_04780 0.83 +0.6
985,189 - OH686_04780 0.83 -0.8
985,189 - OH686_04780 0.83 +0.9
985,189 - OH686_04780 0.83 -0.5
985,189 - OH686_04780 0.83 -0.1
985,189 - OH686_04780 0.83 +0.9
986,081 + +0.2
986,081 + -0.5
986,082 - -0.0
986,082 - -0.0
986,159 + OH686_04790 0.11 -1.2
986,159 + OH686_04790 0.11 -2.3
986,159 + OH686_04790 0.11 -0.6
986,159 + OH686_04790 0.11 -2.8
986,159 + OH686_04790 0.11 -0.4
986,159 + OH686_04790 0.11 -0.6
986,159 + OH686_04790 0.11 -1.6
986,159 + OH686_04790 0.11 -1.4
986,159 + OH686_04790 0.11 -1.4
986,160 - OH686_04790 0.11 -0.8
986,160 - OH686_04790 0.11 -1.3
986,160 - OH686_04790 0.11 -0.0
986,597 + OH686_04790 0.74 -1.5
986,597 + OH686_04790 0.74 -1.2
986,597 + OH686_04790 0.74 -1.1
986,598 - OH686_04790 0.74 -1.6
986,598 - OH686_04790 0.74 -1.1
986,598 - OH686_04790 0.74 -0.8
986,697 + OH686_04790 0.88 -1.7
986,697 + OH686_04790 0.88 -0.4
986,697 + OH686_04790 0.88 -0.8
986,697 + OH686_04790 0.88 -0.3
986,697 + OH686_04790 0.88 -1.3
986,697 + OH686_04790 0.88 -2.2
986,698 - OH686_04790 0.88 -2.2
986,785 + -1.6
986,785 + -1.7
986,785 + -1.7
986,785 + -0.3
986,785 + -2.8
986,785 + -0.2
986,785 + -0.7
986,785 + -1.3
986,785 + -2.1
986,786 - -2.4
986,786 - -0.4
986,786 - -0.1
986,786 - +1.7
986,786 - +0.0
986,786 - +0.8
986,786 - -0.1
986,786 - +0.2
986,786 - -2.2
986,786 - -1.0
986,806 + +0.5
986,859 + -0.4
986,859 + -0.3
986,859 + +0.0
986,859 + +1.3
986,859 + -0.1
986,859 + +0.4
986,859 + +0.1
986,859 + -1.1
986,859 + +0.2
986,859 + +1.3
986,860 - +0.7
986,860 - -0.4
986,860 - +0.8
986,860 - +0.7
986,860 - +1.3
986,860 - -0.1
986,860 - -0.1
986,860 - -0.5
986,860 - -0.5
986,860 - +0.7
986,860 - +0.4
986,863 + -0.5
986,863 + +0.3
986,863 + -0.3
986,863 + +0.9
986,863 + -0.1
986,863 + -0.8
986,863 + -1.0
986,863 + +0.1
986,863 + +0.5
986,864 - +0.8
986,864 - -0.3
986,864 - -0.7
986,864 - +0.2
986,864 - -0.3
986,864 - +0.8
986,864 - -0.5
986,974 + OH686_04795 0.15 +0.6
986,974 + OH686_04795 0.15 +0.2
986,975 - OH686_04795 0.15 -0.8
986,975 - OH686_04795 0.15 +2.2
986,975 - OH686_04795 0.15 +1.1
986,975 - OH686_04795 0.15 +1.0
986,975 - OH686_04795 0.15 -0.7
987,039 + OH686_04795 0.20 +0.3
987,039 + OH686_04795 0.20 -0.6
987,039 + OH686_04795 0.20 +1.2
987,039 + OH686_04795 0.20 -0.6
987,039 + OH686_04795 0.20 +0.4
987,039 + OH686_04795 0.20 -0.3
987,039 + OH686_04795 0.20 -0.5
987,039 + OH686_04795 0.20 -0.6
987,039 + OH686_04795 0.20 -1.1
987,039 + OH686_04795 0.20 -0.9
987,040 - OH686_04795 0.21 +0.5
987,040 - OH686_04795 0.21 +0.9
987,040 - OH686_04795 0.21 +0.1
987,040 - OH686_04795 0.21 -1.4
987,040 - OH686_04795 0.21 +0.2
987,040 - OH686_04795 0.21 -0.8
987,040 - OH686_04795 0.21 +0.4
987,040 - OH686_04795 0.21 -0.3
987,127 + OH686_04795 0.28 -0.1
987,127 + OH686_04795 0.28 +0.4
987,206 + OH686_04795 0.35 -0.4
987,218 + OH686_04795 0.36 -0.4
987,218 + OH686_04795 0.36 -0.1
987,218 + OH686_04795 0.36 +0.5
987,219 - OH686_04795 0.36 +0.1
987,219 - OH686_04795 0.36 +0.1
987,469 + OH686_04795 0.58 +1.1
987,469 + OH686_04795 0.58 -0.6
987,469 + OH686_04795 0.58 +0.3
987,469 + OH686_04795 0.58 -0.3
987,469 + OH686_04795 0.58 -0.8
987,470 - OH686_04795 0.58 -2.0
987,470 - OH686_04795 0.58 +0.7
987,470 - OH686_04795 0.58 +1.5
987,470 - OH686_04795 0.58 -1.3
987,556 + OH686_04795 0.66 -0.1
987,556 + OH686_04795 0.66 +0.0
987,557 - OH686_04795 0.66 -0.2
987,557 - OH686_04795 0.66 +0.2
987,557 - OH686_04795 0.66 -0.3
987,557 - OH686_04795 0.66 +0.1
987,557 - OH686_04795 0.66 -0.3
987,557 - OH686_04795 0.66 -0.4
987,557 - OH686_04795 0.66 +0.8
987,557 - OH686_04795 0.66 +0.4
987,557 - OH686_04795 0.66 -0.6

Or see this region's nucleotide sequence